RLG00000023193

AT-rich interactive domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0018237
Physical Location & Seq
Forward (+)
19734480 .. 19735604
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023193

Sequence Viewer

Length: 1125 bp
ATGACATCTCTCGATAATCTAGGGAGTAATCTGATCAAAGGTTCTTTACCCAATGGAGATCAGCGAGAAAGAAAATCGTCATTTGGCTTCTATACTGATTCTGACATGTTGGTGTGGTTGAAAGCACTTGCATTAGACCCTTGTGACCAAAATGCACCCATAGGTTCAAGTAACAAATTACTGAATGTTCGAGCAGTACGTAAACTTTTGCTTCGTTGTAATGACGTGTATCCTTTGAGTAAGCGTAAACTTGATCAGTTCTTAAGAGATAATAGATACATCGGCACTCATGGAGTAACTACAAATAATTTTGATGATCACACAGCCAAAAGAGTTTGTACAGATACGTTTTCCTCATCCTTAACCAATACAAACAAGAACAATGAATATTTCAAGCCAAAGCTTGTTTGTGCAAAGTTGGTCATCAAGGATAAATCAACTCATGGTTCGGTGATATTAAGACTAGGCAGGTCAAAGCACTGTAGTGCAACCACAATGAATGTTAATGATTCAGCTGATTACTCAAAACTTGAAAGAGTATTAAGGTCAAAGAAGAGAAACTTGAAGGCTCGAGAGACATTGAGATCGCCATTTTCACATGGCAAGTATTTCCACGGATCTGTTCCTATTGGGCCTAGTTTTCAAGCTGAAATTCCTGAATGGACAGGTTCGGTCCACCTTTATGGTAATGGTGACCCAAAAGTTTTGAGGTGGTTGGGCATACGAATTTGGCCCATCAAAGGGAAAAAAACCATTGGACTAGGGAGACCTACATCATGTTCTTGCATCTCTCCAAGATCTATTGGTTGTGTCAAACACCACATTAGTGAAGCAAGACTTGGGTTGCAAGATGAGATTGGGTCTGCCTTTTGGAGTTGGAAGTTTGATGAGATGGGAGAATTTGCCTCCAAGTCGTGGATCTTGAAAGAACAGACAACCTTTAAATCTCTTGTGAGGAGAAATCAATTATCAAAGGTACTAAGTTCTTTGAAGCTTGCTTTTAAGTATTTCCCGGGTAAGTGTCACAAGAGTATTGTGAGTTATTATTATAATGTGTTCATCCTTAGGCGTATAAGTCTTCAAACTAGAGCTTCCTGTTGTGAAATTGACAGCGATGATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ELM2

Protein Analysis

375

Amino Acids

42.36

Weight (kDa)

9.73

Isoelectric Point (pI)

39.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018237)

Species Orthologous Gene IDs
rosa_laevigata RLG00000023193 RLG00000023203
rosa_multiflora Rmu_sc0006653.1_g000007
rosa_roxburghii Rroxscaffold_6G00397400 Rroxscaffold_6G00397420
rosa_rugosa Rorug03G0210700
rosa_samantha Rh2AG350100 Rh3BG299300 Rh3BG299700 Rh3DG292900
rosa_wichuraiana Rw3G023570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1050
Acc36I ACCTGC 1 cut(s) 459
AccB7I CCANNNNNTGG 1 cut(s) 915
AclWI GGATC 2 cut(s) 625, 926
AcsI RAATTY 3 cut(s) 651, 726, 899
AfaI GTAC 3 cut(s) 198, 340, 978
AfiI CCNNNNNNNGG 3 cut(s) 740, 741, 915
AflII CTTAAG 1 cut(s) 262
AflIII ACRYGT 2 cut(s) 105, 225
AgsI TTSAA 9 cut(s) 121, 168, 394, 533, 565, 644, 925, 991, 1082
AjiI CACGTC 1 cut(s) 226
AjuI GAANNNNNNNTTGG 2 cut(s) 822, 854
AleI CACNNNNGTG 2 cut(s) 483, 825
AluBI AGCT 5 cut(s) 403, 515, 647, 994, 1091
AluI AGCT 5 cut(s) 403, 515, 647, 994, 1091
Alw26I GTCTC 2 cut(s) 569, 760
AlwI GGATC 2 cut(s) 625, 926
Ama87I CYCGRG 2 cut(s) 570, 1012
AoxI GGCC 2 cut(s) 632, 731
ApoI RAATTY 3 cut(s) 651, 726, 899
AspS9I GGNCC 3 cut(s) 632, 673, 732
AsuC2I CCSGG 2 cut(s) 1013, 1014
AsuHPI GGTGA 2 cut(s) 463, 704
AvaI CYCGRG 2 cut(s) 570, 1012
AvaII GGWCC 1 cut(s) 673
AxyI CCTNAGG 1 cut(s) 1064
BbsI GAAGAC 1 cut(s) 1070
BccI CCATC 2 cut(s) 743, 886
BciVI GTATCC 1 cut(s) 240
BclI TGATCA 3 cut(s) 33, 253, 316
BcnI CCSGG 2 cut(s) 1013, 1014
BcoDI GTCTC 2 cut(s) 569, 760
BfaI CTAG 5 cut(s) 20, 464, 636, 761, 1086
BfmI CTRYAG 1 cut(s) 481
BfrI CTTAAG 1 cut(s) 262
BfuAI ACCTGC 1 cut(s) 459
BfuI GTATCC 1 cut(s) 240
BglII AGATCT 1 cut(s) 797
Bme1390I CCNGG 2 cut(s) 1013, 1014
Bme18I GGWCC 1 cut(s) 673
BmeT110I CYCGRG 2 cut(s) 570, 1012
BmgBI CACGTC 1 cut(s) 226
BmgT120I GGNCC 3 cut(s) 632, 673, 732
BmrFI CCNGG 2 cut(s) 1013, 1014
BmsI GCATC 1 cut(s) 795
BpiI GAAGAC 1 cut(s) 1070
BpuMI CCSGG 2 cut(s) 1013, 1014
BsaAI YACGTR 1 cut(s) 200
BsaI GGTCTC 1 cut(s) 760
BsaJI CCNNGG 2 cut(s) 613, 1012
Bsc4I CCNNNNNNNGG 3 cut(s) 740, 741, 915
Bse21I CCTNAGG 1 cut(s) 1064
BseDI CCNNGG 2 cut(s) 613, 1012
BseGI GGATG 2 cut(s) 356, 1059
BseLI CCNNNNNNNGG 3 cut(s) 740, 741, 915
BseRI GAGGAG 1 cut(s) 970
BshFI GGCC 2 cut(s) 634, 733
BsiHKCI CYCGRG 2 cut(s) 570, 1012
BsiSI CCGG 1 cut(s) 1013
BslI CCNNNNNNNGG 3 cut(s) 740, 741, 915
BsmAI GTCTC 2 cut(s) 569, 760
BsnI GGCC 2 cut(s) 634, 733
Bso31I GGTCTC 1 cut(s) 760
BsoBI CYCGRG 2 cut(s) 570, 1012
Bsp1407I TGTACA 1 cut(s) 338
Bsp143I GATC 8 cut(s) 33, 58, 253, 316, 584, 617, 797, 918
BspANI GGCC 2 cut(s) 634, 733
BspMI ACCTGC 1 cut(s) 459
BspPI GGATC 2 cut(s) 625, 926
BspTI CTTAAG 1 cut(s) 262
BspTNI GGTCTC 1 cut(s) 760
BsrGI TGTACA 1 cut(s) 338
BssECI CCNNGG 2 cut(s) 613, 1012
BssMI GATC 8 cut(s) 33, 58, 253, 316, 584, 617, 797, 918
Bst4CI ACNGT 1 cut(s) 482
Bst6I CTCTTC 1 cut(s) 548
BstAFI CTTAAG 1 cut(s) 262
BstAUI TGTACA 1 cut(s) 338
BstBAI YACGTR 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 996
BstDEI CTNAG 2 cut(s) 980, 1064
BstDSI CCRYGG 1 cut(s) 613
BstEII GGTNACC 1 cut(s) 692
BstF5I GGATG 2 cut(s) 356, 1059
BstKTI GATC 8 cut(s) 36, 61, 256, 319, 587, 620, 800, 921
BstMAI GTCTC 2 cut(s) 569, 760
BstMBI GATC 8 cut(s) 33, 58, 253, 316, 584, 617, 797, 918
BstNSI RCATGY 1 cut(s) 109
BstPI GGTNACC 1 cut(s) 692
BstSCI CCNGG 2 cut(s) 1011, 1012
BstSFI CTRYAG 1 cut(s) 481
BstSNI TACGTA 1 cut(s) 200
BstV2I GAAGAC 1 cut(s) 1070
BstX2I RGATCY 3 cut(s) 617, 797, 918
BstXI CCANNNNNNTGG 1 cut(s) 683
BstYI RGATCY 3 cut(s) 617, 797, 918
Bsu36I CCTNAGG 1 cut(s) 1064
BsuI GTATCC 1 cut(s) 240
BsuRI GGCC 2 cut(s) 634, 733
BtgI CCRYGG 1 cut(s) 613
BtrI CACGTC 1 cut(s) 226
BtsCI GGATG 2 cut(s) 356, 1059
BtsIMutI CAGTG 1 cut(s) 478
BveI ACCTGC 1 cut(s) 459
Cac8I GCNNGC 1 cut(s) 996
Cfr13I GGNCC 3 cut(s) 632, 673, 732
Cfr9I CCCGGG 1 cut(s) 1012
Csp6I GTAC 3 cut(s) 197, 339, 977
CviAII CATG 5 cut(s) 106, 290, 443, 599, 777
CviQI GTAC 3 cut(s) 197, 339, 977
DdeI CTNAG 2 cut(s) 980, 1064
DpnI GATC 8 cut(s) 35, 60, 255, 318, 586, 619, 799, 920
DpnII GATC 8 cut(s) 33, 58, 253, 316, 584, 617, 797, 918
DraI TTTAAA 1 cut(s) 943
Eam1104I CTCTTC 1 cut(s) 548
EarI CTCTTC 1 cut(s) 548
Eco105I TACGTA 1 cut(s) 200
Eco31I GGTCTC 1 cut(s) 760
Eco47I GGWCC 1 cut(s) 673
Eco81I CCTNAGG 1 cut(s) 1064
Eco88I CYCGRG 2 cut(s) 570, 1012
Eco91I GGTNACC 1 cut(s) 692
EcoO65I GGTNACC 1 cut(s) 692
FaeI CATG 5 cut(s) 109, 293, 446, 602, 780
FalI AAGNNNNNCTT 4 cut(s) 545, 577, 822, 854
FatI CATG 5 cut(s) 105, 289, 442, 598, 776
FbaI TGATCA 3 cut(s) 33, 253, 316
FokI GGATG 2 cut(s) 343, 1046
FspBI CTAG 5 cut(s) 20, 464, 636, 761, 1086
HaeIII GGCC 2 cut(s) 634, 733
HapII CCGG 1 cut(s) 1013
Hin1II CATG 5 cut(s) 109, 293, 446, 602, 780
HindIII AAGCTT 2 cut(s) 401, 992
HinfI GANTC 2 cut(s) 98, 509
HpaII CCGG 1 cut(s) 1013
HphI GGTGA 2 cut(s) 463, 704
Hpy166II GTNNAC 3 cut(s) 203, 248, 676
Hpy188I TCNGA 2 cut(s) 33, 103
Hpy188III TCNNGA 4 cut(s) 11, 572, 656, 922
Hpy8I GTNNAC 3 cut(s) 203, 248, 676
HpyAV CCTTC 1 cut(s) 559
HpyCH4III ACNGT 1 cut(s) 482
HpyCH4IV ACGT 3 cut(s) 199, 225, 347
HpyCH4V TGCA 6 cut(s) 131, 155, 413, 488, 786, 847
HpyF3I CTNAG 2 cut(s) 980, 1064
HpySE526I ACGT 3 cut(s) 199, 225, 347
Hsp92II CATG 5 cut(s) 109, 293, 446, 602, 780
Ksp22I TGATCA 3 cut(s) 33, 253, 316
Kzo9I GATC 8 cut(s) 33, 58, 253, 316, 584, 617, 797, 918
LpnPI CCDG 5 cut(s) 454, 651, 669, 1026, 1108
LweI GCATC 1 cut(s) 795
MaeI CTAG 5 cut(s) 20, 464, 636, 761, 1086
MaeII ACGT 3 cut(s) 199, 225, 347
MaeIII GTNAC 5 cut(s) 143, 170, 295, 692, 1022
MalI GATC 8 cut(s) 35, 60, 255, 318, 586, 619, 799, 920
MboI GATC 8 cut(s) 33, 58, 253, 316, 584, 617, 797, 918
MboII GAAGA 2 cut(s) 565, 1070
MflI RGATCY 3 cut(s) 617, 797, 918
MluCI AATT 7 cut(s) 176, 307, 651, 726, 899, 965, 1104
MmeI TCCRAC 1 cut(s) 857
MnlI CCTC 4 cut(s) 364, 702, 916, 948
MseI TTAA 7 cut(s) 263, 362, 458, 504, 542, 942, 1002
MslI CAYNNNNRTG 4 cut(s) 110, 483, 681, 825
MspA1I CMGCKG 1 cut(s) 515
MspCI CTTAAG 1 cut(s) 262
MspI CCGG 1 cut(s) 1013
MspR9I CCNGG 2 cut(s) 1013, 1014
NciI CCSGG 2 cut(s) 1013, 1014
NdeII GATC 8 cut(s) 33, 58, 253, 316, 584, 617, 797, 918
NlaIII CATG 5 cut(s) 109, 293, 446, 602, 780
NmuCI GTSAC 3 cut(s) 143, 692, 1022
NspI RCATGY 1 cut(s) 109
OliI CACNNNNGTG 2 cut(s) 483, 825
PaeR7I CTCGAG 1 cut(s) 570
PciI ACATGT 1 cut(s) 105
PcsI WCGNNNNNNNCGW 1 cut(s) 196
PfeI GAWTC 2 cut(s) 98, 509
PflMI CCANNNNNTGG 1 cut(s) 915
Ppu21I YACGTR 1 cut(s) 200
PscI ACATGT 1 cut(s) 105
PsiI TTATAA 1 cut(s) 1050
PspEI GGTNACC 1 cut(s) 692
PspPI GGNCC 3 cut(s) 632, 673, 732
PsuI RGATCY 3 cut(s) 617, 797, 918
PvuII CAGCTG 1 cut(s) 515
RsaI GTAC 3 cut(s) 198, 340, 978
RsaNI GTAC 3 cut(s) 197, 339, 977
RseI CAYNNNNRTG 4 cut(s) 110, 483, 681, 825
SaqAI TTAA 7 cut(s) 263, 362, 458, 504, 542, 942, 1002
Sau3AI GATC 8 cut(s) 33, 58, 253, 316, 584, 617, 797, 918
Sau96I GGNCC 3 cut(s) 632, 673, 732
ScrFI CCNGG 2 cut(s) 1013, 1014
SfaNI GCATC 1 cut(s) 795
SfcI CTRYAG 1 cut(s) 481
Sfr274I CTCGAG 1 cut(s) 570
SinI GGWCC 1 cut(s) 673
SlaI CTCGAG 1 cut(s) 570
SmaI CCCGGG 1 cut(s) 1014
SmiMI CAYNNNNRTG 4 cut(s) 110, 483, 681, 825
SmlI CTYRAG 2 cut(s) 262, 570
SmoI CTYRAG 2 cut(s) 262, 570
SnaBI TACGTA 1 cut(s) 200
Sse9I AATT 7 cut(s) 176, 307, 651, 726, 899, 965, 1104
SspI AATATT 1 cut(s) 389
SspMI CTAG 5 cut(s) 20, 464, 636, 761, 1086
StyD4I CCNGG 2 cut(s) 1011, 1012
TaaI ACNGT 1 cut(s) 482
TaiI ACGT 3 cut(s) 202, 228, 350
TaqI TCGA 3 cut(s) 12, 190, 571
TaqII GACCGA 1 cut(s) 661
TasI AATT 7 cut(s) 176, 307, 651, 726, 899, 965, 1104
TatI WGTACW 1 cut(s) 338
TfiI GAWTC 2 cut(s) 98, 509
Tru1I TTAA 7 cut(s) 263, 362, 458, 504, 542, 942, 1002
Tru9I TTAA 7 cut(s) 263, 362, 458, 504, 542, 942, 1002
TscAI CASTG 1 cut(s) 485
TseFI GTSAC 3 cut(s) 143, 692, 1022
Tsp45I GTSAC 3 cut(s) 143, 692, 1022
TspDTI ATGAA 3 cut(s) 399, 512, 1048
TspGWI ACGGA 1 cut(s) 630
TspMI CCCGGG 1 cut(s) 1012
TspRI CASTG 1 cut(s) 485
Van91I CCANNNNNTGG 1 cut(s) 915
Vha464I CTTAAG 1 cut(s) 262
VpaK11BI GGWCC 1 cut(s) 673
XapI RAATTY 3 cut(s) 651, 726, 899
XceI RCATGY 1 cut(s) 109
XhoI CTCGAG 1 cut(s) 570
XmaI CCCGGG 1 cut(s) 1012
XspI CTAG 5 cut(s) 20, 464, 636, 761, 1086
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.