Rroxscaffold_6G00397420

AT-rich interactive domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0018237
Physical Location & Seq
Forward (+)
19117208 .. 19118392
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00397420.1

Sequence Viewer

Length: 1185 bp
ATGTGTCAACAATATAGAATGACATCTCTTGATAATCTAGGGAGTAATGTGATCAAGGGTTCTTTGCCCAATGGAGATCAGCGAGAAAGAAAATCGTCATTTGGCTTCTGTACTGATTCTGACATGTTGGTGTGGTTGAAAGCACTTGCATTAGACCCTTGTGACCAAAATGCACCCATAGGTTCAAGTAACAAATTACTGAATGTTCGAGCAGTACGTAAACTTTTGCTTCGTTGTAATGACGTGTATCCTTGGAGTAAGCGTAAACTTGATCAGTTCTTAATAGGTAGTAGATACATTGGCACTCATGCAGTAACTACAAATAAGTTTGATGATCATACAGCCAAAAGAGTTTGTACAGATACGTTTGGCTCATCCTTAACCATTACAAACAAGAACAATGAATATTTCAAGCCAAAACTTGTTTGTGCAAATAACTTTTCAGGAACTATGTTGGTCATCGAGAATAAATCAACTCATGGTTCGGTGATATTAAGACTAGGCAAGTCAAAGCACTGTAGTGCAACCACAATGAATGTTAATGATTCAGCTGATTACTCAAAACTTGAAAGAGTATTAAGGTCAAAGAAGAGAAACTTGAAGGCTCGAGAGAGTGATCTCAATGTATTTTCACATGGCAAGTATTTCCACGGATCTGTTCCTATTGGGCCTAGTTTTCAAGCTGAAATTCCTGAATGGACAGGTTCGGTCCACCTTTATGGTAATGGTGACCCAAAAGTTTTGAGGTGGTTGGGCATACGAACTTGGCCCATCAAAGGAAAAAAAACAAGTGTTGAGACCACTATAAAAACCATTGGACAAGGGAGACCTACATCATGCTCTTGCATCTCTCCAAGATCTATTGGTTGTGTCAAACACCACATTAGTGAAGCAAGACTTAGGTTGCAAGATGAGATTGGGTCTGCCTTTTGGAGTTGGAAGTTTGATGAGATGGGAGAATTTGCCTCCAAGTCGTGGACCTTGAAAGAACAGACAACCTTTAACTCTCTTGTGAGGAGAAATCAATTATCAAAGGTACTAAGTTCTTTAAAGCTTGCTTTTAAGTATTTCCCGGGTAAGTGTCACAGGAGTATTGTGAGTTATTATTATAATGTGTTCATCCTTAGGCGTATAAGTCTTCAAACTAGAGCTTCCTGTTGTGAAATTGACAGCGATGATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ELM2

Protein Analysis

394

Amino Acids

44.57

Weight (kDa)

9.6

Isoelectric Point (pI)

36.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018237)

Species Orthologous Gene IDs
rosa_laevigata RLG00000023193 RLG00000023203
rosa_multiflora Rmu_sc0006653.1_g000007
rosa_roxburghii Rroxscaffold_6G00397400 Rroxscaffold_6G00397420
rosa_rugosa Rorug03G0210700
rosa_samantha Rh2AG350100 Rh3BG299300 Rh3BG299700 Rh3DG292900
rosa_wichuraiana Rw3G023570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1110
AccB7I CCANNNNNTGG 1 cut(s) 975
AclWI GGATC 1 cut(s) 661
AcsI RAATTY 2 cut(s) 687, 959
AfaI GTAC 4 cut(s) 112, 216, 358, 1038
AfiI CCNNNNNNNGG 2 cut(s) 776, 975
AflIII ACRYGT 2 cut(s) 123, 243
AgsI TTSAA 8 cut(s) 139, 186, 412, 569, 601, 680, 985, 1142
AjiI CACGTC 1 cut(s) 244
AleI CACNNNNGTG 2 cut(s) 519, 885
AluBI AGCT 4 cut(s) 551, 683, 1054, 1151
AluI AGCT 4 cut(s) 551, 683, 1054, 1151
Alw26I GTCTC 2 cut(s) 791, 820
AlwI GGATC 1 cut(s) 661
Ama87I CYCGRG 2 cut(s) 606, 1072
AoxI GGCC 2 cut(s) 668, 767
ApoI RAATTY 2 cut(s) 687, 959
AspS9I GGNCC 4 cut(s) 668, 709, 768, 978
AsuC2I CCSGG 2 cut(s) 1073, 1074
AsuHPI GGTGA 2 cut(s) 499, 740
AvaI CYCGRG 2 cut(s) 606, 1072
AvaII GGWCC 2 cut(s) 709, 978
AxyI CCTNAGG 1 cut(s) 1124
BbsI GAAGAC 1 cut(s) 1130
BccI CCATC 2 cut(s) 779, 946
BciVI GTATCC 1 cut(s) 258
BclI TGATCA 3 cut(s) 51, 271, 334
BcnI CCSGG 2 cut(s) 1073, 1074
BcoDI GTCTC 2 cut(s) 791, 820
BfaI CTAG 4 cut(s) 38, 500, 672, 1146
BfmI CTRYAG 1 cut(s) 517
BfuI GTATCC 1 cut(s) 258
BglII AGATCT 1 cut(s) 857
Bme1390I CCNGG 2 cut(s) 1073, 1074
Bme18I GGWCC 2 cut(s) 709, 978
BmeT110I CYCGRG 2 cut(s) 606, 1072
BmgBI CACGTC 1 cut(s) 244
BmgT120I GGNCC 4 cut(s) 668, 709, 768, 978
BmrFI CCNGG 2 cut(s) 1073, 1074
BmsI GCATC 1 cut(s) 855
BpiI GAAGAC 1 cut(s) 1130
BpuMI CCSGG 2 cut(s) 1073, 1074
BsaAI YACGTR 1 cut(s) 218
BsaI GGTCTC 2 cut(s) 791, 820
BsaJI CCNNGG 3 cut(s) 251, 649, 1072
BsaXI ACNNNNNCTCC 2 cut(s) 247, 277
Bsc4I CCNNNNNNNGG 2 cut(s) 776, 975
Bse21I CCTNAGG 1 cut(s) 1124
BseDI CCNNGG 3 cut(s) 251, 649, 1072
BseGI GGATG 2 cut(s) 374, 1119
BseLI CCNNNNNNNGG 2 cut(s) 776, 975
BseRI GAGGAG 1 cut(s) 1030
BshFI GGCC 2 cut(s) 670, 769
BsiHKCI CYCGRG 2 cut(s) 606, 1072
BsiSI CCGG 1 cut(s) 1073
BslI CCNNNNNNNGG 2 cut(s) 776, 975
BsmAI GTCTC 2 cut(s) 791, 820
BsnI GGCC 2 cut(s) 670, 769
Bso31I GGTCTC 2 cut(s) 791, 820
BsoBI CYCGRG 2 cut(s) 606, 1072
Bsp1407I TGTACA 1 cut(s) 356
Bsp143I GATC 7 cut(s) 51, 76, 271, 334, 616, 653, 857
BspANI GGCC 2 cut(s) 670, 769
BspPI GGATC 1 cut(s) 661
BspTNI GGTCTC 2 cut(s) 791, 820
BsrGI TGTACA 1 cut(s) 356
BssECI CCNNGG 3 cut(s) 251, 649, 1072
BssMI GATC 7 cut(s) 51, 76, 271, 334, 616, 653, 857
BssT1I CCWWGG 1 cut(s) 251
Bst4CI ACNGT 1 cut(s) 518
Bst6I CTCTTC 1 cut(s) 584
BstAUI TGTACA 1 cut(s) 356
BstBAI YACGTR 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 1056
BstDEI CTNAG 3 cut(s) 899, 1040, 1124
BstDSI CCRYGG 1 cut(s) 649
BstEII GGTNACC 1 cut(s) 728
BstF5I GGATG 2 cut(s) 374, 1119
BstKTI GATC 7 cut(s) 54, 79, 274, 337, 619, 656, 860
BstMAI GTCTC 2 cut(s) 791, 820
BstMBI GATC 7 cut(s) 51, 76, 271, 334, 616, 653, 857
BstNSI RCATGY 1 cut(s) 127
BstPI GGTNACC 1 cut(s) 728
BstSCI CCNGG 2 cut(s) 1071, 1072
BstSFI CTRYAG 1 cut(s) 517
BstSNI TACGTA 1 cut(s) 218
BstV2I GAAGAC 1 cut(s) 1130
BstX2I RGATCY 2 cut(s) 653, 857
BstXI CCANNNNNNTGG 1 cut(s) 719
BstYI RGATCY 2 cut(s) 653, 857
Bsu36I CCTNAGG 1 cut(s) 1124
BsuI GTATCC 1 cut(s) 258
BsuRI GGCC 2 cut(s) 670, 769
BtgI CCRYGG 1 cut(s) 649
BtrI CACGTC 1 cut(s) 244
BtsCI GGATG 2 cut(s) 374, 1119
BtsIMutI CAGTG 1 cut(s) 514
Cac8I GCNNGC 1 cut(s) 1056
Cfr13I GGNCC 4 cut(s) 668, 709, 768, 978
Cfr9I CCCGGG 1 cut(s) 1072
Csp6I GTAC 4 cut(s) 111, 215, 357, 1037
CviAII CATG 5 cut(s) 124, 308, 479, 635, 837
CviQI GTAC 4 cut(s) 111, 215, 357, 1037
DdeI CTNAG 3 cut(s) 899, 1040, 1124
DpnI GATC 7 cut(s) 53, 78, 273, 336, 618, 655, 859
DpnII GATC 7 cut(s) 51, 76, 271, 334, 616, 653, 857
DraI TTTAAA 1 cut(s) 1050
Eam1104I CTCTTC 1 cut(s) 584
EarI CTCTTC 1 cut(s) 584
Eco105I TACGTA 1 cut(s) 218
Eco130I CCWWGG 1 cut(s) 251
Eco31I GGTCTC 2 cut(s) 791, 820
Eco47I GGWCC 2 cut(s) 709, 978
Eco81I CCTNAGG 1 cut(s) 1124
Eco88I CYCGRG 2 cut(s) 606, 1072
Eco91I GGTNACC 1 cut(s) 728
EcoO65I GGTNACC 1 cut(s) 728
EcoT14I CCWWGG 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 251
FaeI CATG 5 cut(s) 127, 311, 482, 638, 840
FalI AAGNNNNNCTT 4 cut(s) 581, 613, 882, 914
FatI CATG 5 cut(s) 123, 307, 478, 634, 836
FbaI TGATCA 3 cut(s) 51, 271, 334
FokI GGATG 2 cut(s) 361, 1106
FspBI CTAG 4 cut(s) 38, 500, 672, 1146
HaeIII GGCC 2 cut(s) 670, 769
HapII CCGG 1 cut(s) 1073
Hin1II CATG 5 cut(s) 127, 311, 482, 638, 840
HincII GTYRAC 1 cut(s) 8
HindII GTYRAC 1 cut(s) 8
HindIII AAGCTT 1 cut(s) 1052
HinfI GANTC 2 cut(s) 116, 545
HpaII CCGG 1 cut(s) 1073
HphI GGTGA 2 cut(s) 499, 740
Hpy166II GTNNAC 5 cut(s) 8, 221, 266, 712, 978
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 5 cut(s) 29, 444, 463, 608, 692
Hpy8I GTNNAC 5 cut(s) 8, 221, 266, 712, 978
HpyAV CCTTC 1 cut(s) 595
HpyCH4III ACNGT 1 cut(s) 518
HpyCH4IV ACGT 3 cut(s) 217, 243, 365
HpyCH4V TGCA 7 cut(s) 149, 173, 311, 431, 524, 846, 907
HpyF3I CTNAG 3 cut(s) 899, 1040, 1124
HpySE526I ACGT 3 cut(s) 217, 243, 365
Hsp92II CATG 5 cut(s) 127, 311, 482, 638, 840
Ksp22I TGATCA 3 cut(s) 51, 271, 334
Kzo9I GATC 7 cut(s) 51, 76, 271, 334, 616, 653, 857
LpnPI CCDG 6 cut(s) 429, 687, 705, 1072, 1086, 1168
LweI GCATC 1 cut(s) 855
MaeI CTAG 4 cut(s) 38, 500, 672, 1146
MaeII ACGT 3 cut(s) 217, 243, 365
MaeIII GTNAC 5 cut(s) 161, 188, 313, 728, 1082
MalI GATC 7 cut(s) 53, 78, 273, 336, 618, 655, 859
MboI GATC 7 cut(s) 51, 76, 271, 334, 616, 653, 857
MboII GAAGA 2 cut(s) 601, 1130
MflI RGATCY 2 cut(s) 653, 857
MluCI AATT 5 cut(s) 194, 687, 959, 1025, 1164
MmeI TCCRAC 1 cut(s) 917
MnlI CCTC 3 cut(s) 738, 976, 1008
MseI TTAA 8 cut(s) 281, 380, 494, 540, 578, 1002, 1049, 1062
MslI CAYNNNNRTG 4 cut(s) 128, 519, 717, 885
MspA1I CMGCKG 1 cut(s) 551
MspI CCGG 1 cut(s) 1073
MspR9I CCNGG 2 cut(s) 1073, 1074
NciI CCSGG 2 cut(s) 1073, 1074
NdeII GATC 7 cut(s) 51, 76, 271, 334, 616, 653, 857
NlaIII CATG 5 cut(s) 127, 311, 482, 638, 840
NmuCI GTSAC 3 cut(s) 161, 728, 1082
NspI RCATGY 1 cut(s) 127
OliI CACNNNNGTG 2 cut(s) 519, 885
PaeR7I CTCGAG 1 cut(s) 606
PciI ACATGT 1 cut(s) 123
PcsI WCGNNNNNNNCGW 1 cut(s) 214
PfeI GAWTC 2 cut(s) 116, 545
PflMI CCANNNNNTGG 1 cut(s) 975
Ppu21I YACGTR 1 cut(s) 218
PscI ACATGT 1 cut(s) 123
PsiI TTATAA 1 cut(s) 1110
PspEI GGTNACC 1 cut(s) 728
PspPI GGNCC 4 cut(s) 668, 709, 768, 978
PsuI RGATCY 2 cut(s) 653, 857
PvuII CAGCTG 1 cut(s) 551
RsaI GTAC 4 cut(s) 112, 216, 358, 1038
RsaNI GTAC 4 cut(s) 111, 215, 357, 1037
RseI CAYNNNNRTG 4 cut(s) 128, 519, 717, 885
SaqAI TTAA 8 cut(s) 281, 380, 494, 540, 578, 1002, 1049, 1062
Sau3AI GATC 7 cut(s) 51, 76, 271, 334, 616, 653, 857
Sau96I GGNCC 4 cut(s) 668, 709, 768, 978
ScrFI CCNGG 2 cut(s) 1073, 1074
SfaNI GCATC 1 cut(s) 855
SfcI CTRYAG 1 cut(s) 517
Sfr274I CTCGAG 1 cut(s) 606
SinI GGWCC 2 cut(s) 709, 978
SlaI CTCGAG 1 cut(s) 606
SmaI CCCGGG 1 cut(s) 1074
SmiMI CAYNNNNRTG 4 cut(s) 128, 519, 717, 885
SmlI CTYRAG 1 cut(s) 606
SmoI CTYRAG 1 cut(s) 606
SnaBI TACGTA 1 cut(s) 218
Sse9I AATT 5 cut(s) 194, 687, 959, 1025, 1164
SspI AATATT 1 cut(s) 407
SspMI CTAG 4 cut(s) 38, 500, 672, 1146
StyD4I CCNGG 2 cut(s) 1071, 1072
StyI CCWWGG 1 cut(s) 251
TaaI ACNGT 1 cut(s) 518
TaiI ACGT 3 cut(s) 220, 246, 368
TaqI TCGA 3 cut(s) 208, 462, 607
TaqII GACCGA 1 cut(s) 697
TasI AATT 5 cut(s) 194, 687, 959, 1025, 1164
TatI WGTACW 2 cut(s) 110, 356
TfiI GAWTC 2 cut(s) 116, 545
Tru1I TTAA 8 cut(s) 281, 380, 494, 540, 578, 1002, 1049, 1062
Tru9I TTAA 8 cut(s) 281, 380, 494, 540, 578, 1002, 1049, 1062
TscAI CASTG 1 cut(s) 521
TseFI GTSAC 3 cut(s) 161, 728, 1082
Tsp45I GTSAC 3 cut(s) 161, 728, 1082
TspDTI ATGAA 3 cut(s) 417, 548, 1108
TspGWI ACGGA 1 cut(s) 666
TspMI CCCGGG 1 cut(s) 1072
TspRI CASTG 1 cut(s) 521
Van91I CCANNNNNTGG 1 cut(s) 975
VpaK11BI GGWCC 2 cut(s) 709, 978
XapI RAATTY 2 cut(s) 687, 959
XceI RCATGY 1 cut(s) 127
XhoI CTCGAG 1 cut(s) 606
XmaI CCCGGG 1 cut(s) 1072
XspI CTAG 4 cut(s) 38, 500, 672, 1146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.