Rh3BG299700

AT-rich interactive domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0018237
Physical Location & Seq
Reverse (-)
30089987 .. 30090766
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG299700.1

Sequence Viewer

Length: 780 bp
ATGACATCTCTCGATAATCTAGGGAGTAATGTGATCAAAGGTTCTTTGCCCAATGGAGATCAGCGAGAAAGAAAATTGTCATTTGGCTTCTATACTGATTCTGACATGTTGGTGTGGTTGAAAGCACTTGCATTAGACCCTTGTGACCAAAATGCACCCATAGGTTCAAGTAACAAATTACTGAATGTTCGAGCAGTACGTAAACTTTTGCTTCGTTGTAATGACGTGTATCCTTGGAGTAAGCGTAAACTTGATCAGTTCTTAAGAGATGGTAGATACATCGGCACTCATGGAGTAACTACAAATAATTTTGATGATCACACAGCCAAAAGAGTTTGTACAGATACGTTTTCCTCATCCTTAACCAATACAAACAAGAACAATGAATATTTCAAGCCAAAGCTTGTTTGTGCAAATAATTGTTCAGGATATATGTTGGTCATCAAGGATAAATCAACTCATGGTTCGGTGATATTAAGACTAGGCAAGTCAAAGCACTGTAGTGCAACCACAATGAATGTTAATGATTCAGCTGATTACTCAAAACTTGAAAGAGTATTAAGGTCAAAGAAGAGAAACTTGAAGGCTCGAGAGACATTGAGATCGGTATTTTCACATGGCAAGTATTTCCACGGATCTATTCCTATTGGGCCTAGTTTTCAAGCTGAAATTCCTGAATGGACAGGTTCGGTCCACCTTTATGGTAATGGTGACCCAAAAGTTTTGAGGTGGTTGGGCATACGAACTTGGCCCATCAAAGGAAAAAAAACAGGGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ELM2

Protein Analysis

259

Amino Acids

29.12

Weight (kDa)

9.77

Isoelectric Point (pI)

21.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018237)

Species Orthologous Gene IDs
rosa_laevigata RLG00000023193 RLG00000023203
rosa_multiflora Rmu_sc0006653.1_g000007
rosa_roxburghii Rroxscaffold_6G00397400 Rroxscaffold_6G00397420
rosa_rugosa Rorug03G0210700
rosa_samantha Rh2AG350100 Rh3BG299300 Rh3BG299700 Rh3DG292900
rosa_wichuraiana Rw3G023570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 643
AcsI RAATTY 1 cut(s) 669
AfaI GTAC 2 cut(s) 198, 340
AfiI CCNNNNNNNGG 1 cut(s) 758
AflII CTTAAG 1 cut(s) 262
AflIII ACRYGT 2 cut(s) 105, 225
AgsI TTSAA 6 cut(s) 121, 168, 394, 551, 583, 662
AjiI CACGTC 1 cut(s) 226
AleI CACNNNNGTG 1 cut(s) 501
AluBI AGCT 3 cut(s) 403, 533, 665
AluI AGCT 3 cut(s) 403, 533, 665
Alw26I GTCTC 1 cut(s) 587
AlwI GGATC 1 cut(s) 643
Ama87I CYCGRG 1 cut(s) 588
AoxI GGCC 2 cut(s) 650, 749
ApoI RAATTY 1 cut(s) 669
AspS9I GGNCC 3 cut(s) 650, 691, 750
AsuHPI GGTGA 2 cut(s) 481, 722
AvaI CYCGRG 1 cut(s) 588
AvaII GGWCC 1 cut(s) 691
BccI CCATC 2 cut(s) 263, 761
BciVI GTATCC 1 cut(s) 240
BclI TGATCA 3 cut(s) 33, 253, 316
BcoDI GTCTC 1 cut(s) 587
BfaI CTAG 3 cut(s) 20, 482, 654
BfmI CTRYAG 1 cut(s) 499
BfrI CTTAAG 1 cut(s) 262
BfuI GTATCC 1 cut(s) 240
Bme18I GGWCC 1 cut(s) 691
BmeT110I CYCGRG 1 cut(s) 588
BmgBI CACGTC 1 cut(s) 226
BmgT120I GGNCC 3 cut(s) 650, 691, 750
BsaAI YACGTR 1 cut(s) 200
BsaJI CCNNGG 2 cut(s) 233, 631
BsaXI ACNNNNNCTCC 2 cut(s) 229, 259
Bsc4I CCNNNNNNNGG 1 cut(s) 758
BseDI CCNNGG 2 cut(s) 233, 631
BseGI GGATG 1 cut(s) 356
BseLI CCNNNNNNNGG 1 cut(s) 758
BshFI GGCC 2 cut(s) 652, 751
BsiHKCI CYCGRG 1 cut(s) 588
BslI CCNNNNNNNGG 1 cut(s) 758
BsmAI GTCTC 1 cut(s) 587
BsnI GGCC 2 cut(s) 652, 751
BsoBI CYCGRG 1 cut(s) 588
Bsp1407I TGTACA 1 cut(s) 338
Bsp143I GATC 6 cut(s) 33, 58, 253, 316, 602, 635
BspANI GGCC 2 cut(s) 652, 751
BspPI GGATC 1 cut(s) 643
BspTI CTTAAG 1 cut(s) 262
BsrGI TGTACA 1 cut(s) 338
BssECI CCNNGG 2 cut(s) 233, 631
BssMI GATC 6 cut(s) 33, 58, 253, 316, 602, 635
BssT1I CCWWGG 1 cut(s) 233
Bst4CI ACNGT 1 cut(s) 500
Bst6I CTCTTC 1 cut(s) 566
BstAFI CTTAAG 1 cut(s) 262
BstAUI TGTACA 1 cut(s) 338
BstBAI YACGTR 1 cut(s) 200
BstDSI CCRYGG 1 cut(s) 631
BstEII GGTNACC 1 cut(s) 710
BstF5I GGATG 1 cut(s) 356
BstKTI GATC 6 cut(s) 36, 61, 256, 319, 605, 638
BstMAI GTCTC 1 cut(s) 587
BstMBI GATC 6 cut(s) 33, 58, 253, 316, 602, 635
BstNSI RCATGY 1 cut(s) 109
BstPI GGTNACC 1 cut(s) 710
BstSFI CTRYAG 1 cut(s) 499
BstSNI TACGTA 1 cut(s) 200
BstX2I RGATCY 1 cut(s) 635
BstXI CCANNNNNNTGG 1 cut(s) 701
BstYI RGATCY 1 cut(s) 635
BsuI GTATCC 1 cut(s) 240
BsuRI GGCC 2 cut(s) 652, 751
BtgI CCRYGG 1 cut(s) 631
BtrI CACGTC 1 cut(s) 226
BtsCI GGATG 1 cut(s) 356
BtsIMutI CAGTG 1 cut(s) 496
Cfr13I GGNCC 3 cut(s) 650, 691, 750
Csp6I GTAC 2 cut(s) 197, 339
CviAII CATG 4 cut(s) 106, 290, 461, 617
CviJI RGCY 9 cut(s) 87, 326, 397, 403, 533, 587, 652, 665, 751
CviKI_1 RGCY 9 cut(s) 87, 326, 397, 403, 533, 587, 652, 665, 751
CviQI GTAC 2 cut(s) 197, 339
DpnI GATC 6 cut(s) 35, 60, 255, 318, 604, 637
DpnII GATC 6 cut(s) 33, 58, 253, 316, 602, 635
Eam1104I CTCTTC 1 cut(s) 566
EarI CTCTTC 1 cut(s) 566
Eco105I TACGTA 1 cut(s) 200
Eco130I CCWWGG 1 cut(s) 233
Eco47I GGWCC 1 cut(s) 691
Eco88I CYCGRG 1 cut(s) 588
Eco91I GGTNACC 1 cut(s) 710
EcoO65I GGTNACC 1 cut(s) 710
EcoT14I CCWWGG 1 cut(s) 233
ErhI CCWWGG 1 cut(s) 233
FaeI CATG 4 cut(s) 109, 293, 464, 620
FalI AAGNNNNNCTT 2 cut(s) 563, 595
FatI CATG 4 cut(s) 105, 289, 460, 616
FbaI TGATCA 3 cut(s) 33, 253, 316
FokI GGATG 1 cut(s) 343
FspBI CTAG 3 cut(s) 20, 482, 654
HaeIII GGCC 2 cut(s) 652, 751
Hin1II CATG 4 cut(s) 109, 293, 464, 620
HindIII AAGCTT 1 cut(s) 401
HinfI GANTC 2 cut(s) 98, 527
HphI GGTGA 2 cut(s) 481, 722
Hpy166II GTNNAC 3 cut(s) 203, 248, 694
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 4 cut(s) 11, 426, 590, 674
Hpy8I GTNNAC 3 cut(s) 203, 248, 694
HpyAV CCTTC 1 cut(s) 577
HpyCH4III ACNGT 1 cut(s) 500
HpyCH4IV ACGT 3 cut(s) 199, 225, 347
HpyCH4V TGCA 4 cut(s) 131, 155, 413, 506
HpySE526I ACGT 3 cut(s) 199, 225, 347
Hsp92II CATG 4 cut(s) 109, 293, 464, 620
Ksp22I TGATCA 3 cut(s) 33, 253, 316
Kzo9I GATC 6 cut(s) 33, 58, 253, 316, 602, 635
LpnPI CCDG 4 cut(s) 411, 669, 687, 756
MaeI CTAG 3 cut(s) 20, 482, 654
MaeII ACGT 3 cut(s) 199, 225, 347
MaeIII GTNAC 4 cut(s) 143, 170, 295, 710
MalI GATC 6 cut(s) 35, 60, 255, 318, 604, 637
MboI GATC 6 cut(s) 33, 58, 253, 316, 602, 635
MboII GAAGA 1 cut(s) 583
MflI RGATCY 1 cut(s) 635
MluCI AATT 5 cut(s) 74, 176, 307, 418, 669
MnlI CCTC 2 cut(s) 364, 720
MseI TTAA 5 cut(s) 263, 362, 476, 522, 560
MslI CAYNNNNRTG 3 cut(s) 110, 501, 699
MspA1I CMGCKG 1 cut(s) 533
MspCI CTTAAG 1 cut(s) 262
NdeII GATC 6 cut(s) 33, 58, 253, 316, 602, 635
NlaIII CATG 4 cut(s) 109, 293, 464, 620
NmuCI GTSAC 2 cut(s) 143, 710
NspI RCATGY 1 cut(s) 109
OliI CACNNNNGTG 1 cut(s) 501
PaeR7I CTCGAG 1 cut(s) 588
PciI ACATGT 1 cut(s) 105
PcsI WCGNNNNNNNCGW 1 cut(s) 196
PfeI GAWTC 2 cut(s) 98, 527
Ppu21I YACGTR 1 cut(s) 200
PscI ACATGT 1 cut(s) 105
PspEI GGTNACC 1 cut(s) 710
PspPI GGNCC 3 cut(s) 650, 691, 750
PsuI RGATCY 1 cut(s) 635
PvuII CAGCTG 1 cut(s) 533
RsaI GTAC 2 cut(s) 198, 340
RsaNI GTAC 2 cut(s) 197, 339
RseI CAYNNNNRTG 3 cut(s) 110, 501, 699
SaqAI TTAA 5 cut(s) 263, 362, 476, 522, 560
Sau3AI GATC 6 cut(s) 33, 58, 253, 316, 602, 635
Sau96I GGNCC 3 cut(s) 650, 691, 750
SfcI CTRYAG 1 cut(s) 499
Sfr274I CTCGAG 1 cut(s) 588
SinI GGWCC 1 cut(s) 691
SlaI CTCGAG 1 cut(s) 588
SmiMI CAYNNNNRTG 3 cut(s) 110, 501, 699
SmlI CTYRAG 2 cut(s) 262, 588
SmoI CTYRAG 2 cut(s) 262, 588
SnaBI TACGTA 1 cut(s) 200
Sse9I AATT 5 cut(s) 74, 176, 307, 418, 669
SspI AATATT 1 cut(s) 389
SspMI CTAG 3 cut(s) 20, 482, 654
StyI CCWWGG 1 cut(s) 233
TaaI ACNGT 1 cut(s) 500
TaiI ACGT 3 cut(s) 202, 228, 350
TaqI TCGA 3 cut(s) 12, 190, 589
TaqII GACCGA 1 cut(s) 679
TasI AATT 5 cut(s) 74, 176, 307, 418, 669
TatI WGTACW 1 cut(s) 338
TfiI GAWTC 2 cut(s) 98, 527
Tru1I TTAA 5 cut(s) 263, 362, 476, 522, 560
Tru9I TTAA 5 cut(s) 263, 362, 476, 522, 560
TscAI CASTG 1 cut(s) 503
TseFI GTSAC 2 cut(s) 143, 710
Tsp45I GTSAC 2 cut(s) 143, 710
TspDTI ATGAA 2 cut(s) 399, 530
TspGWI ACGGA 1 cut(s) 648
TspRI CASTG 1 cut(s) 503
Vha464I CTTAAG 1 cut(s) 262
VpaK11BI GGWCC 1 cut(s) 691
XapI RAATTY 1 cut(s) 669
XceI RCATGY 1 cut(s) 109
XhoI CTCGAG 1 cut(s) 588
XspI CTAG 3 cut(s) 20, 482, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.