Rh3BG299300

AT-rich interactive domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0018237
Physical Location & Seq
Reverse (-)
30062185 .. 30063504
1320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG299300.1

Sequence Viewer

Length: 1182 bp
ATGTGTCAACAATTTAGAATAACACCTCTTGATAATCTAGGGAGTAATGTGATCAAAGGTTCTTTGCCCAATGGGGATCAGCGAGAAAGAAAATCGTCATTTGGCTTCTATACTGATTCTGACATGTTGGTGTGGTTGAAAGCACTTGCATTAGACCCTTGTGACCAAAATGCACCCATAGGTTCAAGTAACAAATTACTGAATGTTCGAGCAGTACGTAAACTTCTGCTTCGTTGTAATGACGTGCATCCTTGGAGTAAGCGTAAACTTGATCAGTTCTTAAGAGGTAGTAGATACATTGGCACTCATGGAGTAATTACAAATAATTTTGATGATCATACAGCCAAAAGAGTTTGTACAGATACGTTTTGCTCATCCTTAACCATTACAAACAACAATGAATATTTCAAGCCAAAACTTGTTTGTGCAAATAACTTTTCAGGAAATTTGTTGGTCATCGAGGATAAATCAACTCATGGTTCGGTGATATTAAGACTAGGCAAGTCAGAGCACTGTAGTGCAACCACAATGAATGTTAATGATTCAGCTGATTACTCAAAACTTGAAAGAGTATTAAGGTCAAAGAAGAGAAACTTGAAGGCTCGAGAGACATTGAGATCGGTATTTTCACATGGCAAGTATTTCCACGGATCTGTTCCTATTGGGCCTAGTTTTCAAGCTGAAATTCCTGAATGGACAGGTTCGGTCCACCTTTATGGTAATGGTGACCCAAAAGTTTTGAGGTGGTTGGGCATACGAATTTGGCCCATCAAAGGGCAAAAATCAAGTGTTGAGACCACTATAAAAACCATTGGACTAGGGAGACCTACATCATGTTCTTGCATCTCTCCAAGATCTATTGGTTGTGTCAAACACCACATTAGTGAAGCAAGACTTAGGTTGCAAGATGAGATTGGGTCTGCCTTTTGGAGTTGGAAGTTTGATGAGATGGGAGAATTTGCCTCCAAGTCGTGGACCTTGAAAGAACAGACAACCTTTAAATCTCTTGTGAGGAGAAATCAATTATCAAAGGTACTAAGTTCTTTGAAACTTGCTTTTAAGTATTTCCCGGGTAAGTGTCACAGGAGTATTGTGAGTTATTACTATAATGTGTTCATCCTTAGGCGTATAAGTCTTCAAACTAGAGCTTCCTGTTGTGAAATTGACAGCGATGATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ELM2

Protein Analysis

393

Amino Acids

44.55

Weight (kDa)

9.56

Isoelectric Point (pI)

37.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018237)

Species Orthologous Gene IDs
rosa_laevigata RLG00000023193 RLG00000023203
rosa_multiflora Rmu_sc0006653.1_g000007
rosa_roxburghii Rroxscaffold_6G00397400 Rroxscaffold_6G00397420
rosa_rugosa Rorug03G0210700
rosa_samantha Rh2AG350100 Rh3BG299300 Rh3BG299700 Rh3DG292900
rosa_wichuraiana Rw3G023570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 972
AclWI GGATC 2 cut(s) 84, 658
AcsI RAATTY 4 cut(s) 445, 684, 759, 956
AfaI GTAC 3 cut(s) 216, 358, 1035
AfiI CCNNNNNNNGG 3 cut(s) 773, 774, 972
AflII CTTAAG 1 cut(s) 280
AflIII ACRYGT 1 cut(s) 123
AgsI TTSAA 9 cut(s) 139, 186, 409, 566, 598, 677, 982, 1048, 1139
AjiI CACGTC 1 cut(s) 244
AleI CACNNNNGTG 2 cut(s) 516, 882
AluBI AGCT 3 cut(s) 548, 680, 1148
AluI AGCT 3 cut(s) 548, 680, 1148
Alw21I GWGCWC 1 cut(s) 513
Alw26I GTCTC 3 cut(s) 602, 788, 817
AlwI GGATC 2 cut(s) 84, 658
Ama87I CYCGRG 2 cut(s) 603, 1069
AoxI GGCC 2 cut(s) 665, 764
ApoI RAATTY 4 cut(s) 445, 684, 759, 956
AspS9I GGNCC 4 cut(s) 665, 706, 765, 975
AsuC2I CCSGG 2 cut(s) 1070, 1071
AsuHPI GGTGA 2 cut(s) 496, 737
AvaI CYCGRG 2 cut(s) 603, 1069
AvaII GGWCC 2 cut(s) 706, 975
AxyI CCTNAGG 1 cut(s) 1121
BarI GAAGNNNNNNTAC 2 cut(s) 207, 239
BbsI GAAGAC 1 cut(s) 1127
Bbv12I GWGCWC 1 cut(s) 513
BccI CCATC 2 cut(s) 776, 943
BclI TGATCA 3 cut(s) 51, 271, 334
BcnI CCSGG 2 cut(s) 1070, 1071
BcoDI GTCTC 3 cut(s) 602, 788, 817
BfaI CTAG 5 cut(s) 38, 497, 669, 818, 1143
BfmI CTRYAG 1 cut(s) 514
BfrI CTTAAG 1 cut(s) 280
BglII AGATCT 1 cut(s) 854
Bme1390I CCNGG 2 cut(s) 1070, 1071
Bme18I GGWCC 2 cut(s) 706, 975
BmeT110I CYCGRG 2 cut(s) 603, 1069
BmgBI CACGTC 1 cut(s) 244
BmgT120I GGNCC 4 cut(s) 665, 706, 765, 975
BmrFI CCNGG 2 cut(s) 1070, 1071
BmsI GCATC 2 cut(s) 256, 852
BpiI GAAGAC 1 cut(s) 1127
BpuMI CCSGG 2 cut(s) 1070, 1071
BsaAI YACGTR 1 cut(s) 218
BsaI GGTCTC 2 cut(s) 788, 817
BsaJI CCNNGG 3 cut(s) 251, 646, 1069
BsaXI ACNNNNNCTCC 2 cut(s) 247, 277
Bsc4I CCNNNNNNNGG 3 cut(s) 773, 774, 972
Bse21I CCTNAGG 1 cut(s) 1121
BseDI CCNNGG 3 cut(s) 251, 646, 1069
BseGI GGATG 3 cut(s) 247, 374, 1116
BseLI CCNNNNNNNGG 3 cut(s) 773, 774, 972
BseRI GAGGAG 1 cut(s) 1027
BshFI GGCC 2 cut(s) 667, 766
BsiHKAI GWGCWC 1 cut(s) 513
BsiHKCI CYCGRG 2 cut(s) 603, 1069
BsiSI CCGG 1 cut(s) 1070
BslI CCNNNNNNNGG 3 cut(s) 773, 774, 972
BsmAI GTCTC 3 cut(s) 602, 788, 817
BsnI GGCC 2 cut(s) 667, 766
Bso31I GGTCTC 2 cut(s) 788, 817
BsoBI CYCGRG 2 cut(s) 603, 1069
Bsp1286I GDGCHC 1 cut(s) 513
Bsp1407I TGTACA 1 cut(s) 356
Bsp143I GATC 7 cut(s) 51, 76, 271, 334, 617, 650, 854
BspANI GGCC 2 cut(s) 667, 766
BspPI GGATC 2 cut(s) 84, 658
BspTI CTTAAG 1 cut(s) 280
BspTNI GGTCTC 2 cut(s) 788, 817
BsrGI TGTACA 1 cut(s) 356
BssECI CCNNGG 3 cut(s) 251, 646, 1069
BssMI GATC 7 cut(s) 51, 76, 271, 334, 617, 650, 854
BssT1I CCWWGG 1 cut(s) 251
Bst4CI ACNGT 1 cut(s) 515
Bst6I CTCTTC 1 cut(s) 581
BstAFI CTTAAG 1 cut(s) 280
BstAUI TGTACA 1 cut(s) 356
BstBAI YACGTR 1 cut(s) 218
BstDEI CTNAG 3 cut(s) 896, 1037, 1121
BstDSI CCRYGG 1 cut(s) 646
BstEII GGTNACC 1 cut(s) 725
BstF5I GGATG 3 cut(s) 247, 374, 1116
BstKTI GATC 7 cut(s) 54, 79, 274, 337, 620, 653, 857
BstMAI GTCTC 3 cut(s) 602, 788, 817
BstMBI GATC 7 cut(s) 51, 76, 271, 334, 617, 650, 854
BstNSI RCATGY 1 cut(s) 127
BstPI GGTNACC 1 cut(s) 725
BstSCI CCNGG 2 cut(s) 1068, 1069
BstSFI CTRYAG 1 cut(s) 514
BstSNI TACGTA 1 cut(s) 218
BstV2I GAAGAC 1 cut(s) 1127
BstX2I RGATCY 2 cut(s) 650, 854
BstXI CCANNNNNNTGG 1 cut(s) 716
BstYI RGATCY 2 cut(s) 650, 854
Bsu36I CCTNAGG 1 cut(s) 1121
BsuRI GGCC 2 cut(s) 667, 766
BtgI CCRYGG 1 cut(s) 646
BtrI CACGTC 1 cut(s) 244
BtsCI GGATG 3 cut(s) 247, 374, 1116
BtsIMutI CAGTG 1 cut(s) 511
Cfr13I GGNCC 4 cut(s) 665, 706, 765, 975
Cfr9I CCCGGG 1 cut(s) 1069
Csp6I GTAC 3 cut(s) 215, 357, 1034
CviAII CATG 5 cut(s) 124, 308, 476, 632, 834
CviJI RGCY 9 cut(s) 105, 344, 412, 548, 602, 667, 680, 766, 1148
CviKI_1 RGCY 9 cut(s) 105, 344, 412, 548, 602, 667, 680, 766, 1148
CviQI GTAC 3 cut(s) 215, 357, 1034
DdeI CTNAG 3 cut(s) 896, 1037, 1121
DpnI GATC 7 cut(s) 53, 78, 273, 336, 619, 652, 856
DpnII GATC 7 cut(s) 51, 76, 271, 334, 617, 650, 854
DraI TTTAAA 1 cut(s) 1000
Eam1104I CTCTTC 1 cut(s) 581
EarI CTCTTC 1 cut(s) 581
Eco105I TACGTA 1 cut(s) 218
Eco130I CCWWGG 1 cut(s) 251
Eco31I GGTCTC 2 cut(s) 788, 817
Eco47I GGWCC 2 cut(s) 706, 975
Eco81I CCTNAGG 1 cut(s) 1121
Eco88I CYCGRG 2 cut(s) 603, 1069
Eco91I GGTNACC 1 cut(s) 725
EcoO65I GGTNACC 1 cut(s) 725
EcoT14I CCWWGG 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 251
FaeI CATG 5 cut(s) 127, 311, 479, 635, 837
FalI AAGNNNNNCTT 4 cut(s) 578, 610, 879, 911
FatI CATG 5 cut(s) 123, 307, 475, 631, 833
FbaI TGATCA 3 cut(s) 51, 271, 334
FokI GGATG 3 cut(s) 234, 361, 1103
FspBI CTAG 5 cut(s) 38, 497, 669, 818, 1143
HaeIII GGCC 2 cut(s) 667, 766
HapII CCGG 1 cut(s) 1070
Hin1II CATG 5 cut(s) 127, 311, 479, 635, 837
HincII GTYRAC 1 cut(s) 8
HindII GTYRAC 1 cut(s) 8
HinfI GANTC 2 cut(s) 116, 542
HpaII CCGG 1 cut(s) 1070
HphI GGTGA 2 cut(s) 496, 737
Hpy166II GTNNAC 5 cut(s) 8, 221, 266, 709, 975
Hpy188I TCNGA 2 cut(s) 121, 508
Hpy188III TCNNGA 4 cut(s) 29, 441, 605, 689
Hpy8I GTNNAC 5 cut(s) 8, 221, 266, 709, 975
HpyAV CCTTC 1 cut(s) 592
HpyCH4III ACNGT 1 cut(s) 515
HpyCH4IV ACGT 3 cut(s) 217, 243, 365
HpyCH4V TGCA 7 cut(s) 149, 173, 247, 428, 521, 843, 904
HpyF3I CTNAG 3 cut(s) 896, 1037, 1121
HpySE526I ACGT 3 cut(s) 217, 243, 365
Hsp92II CATG 5 cut(s) 127, 311, 479, 635, 837
Ksp22I TGATCA 3 cut(s) 51, 271, 334
Kzo9I GATC 7 cut(s) 51, 76, 271, 334, 617, 650, 854
LpnPI CCDG 6 cut(s) 426, 684, 702, 1069, 1083, 1165
LweI GCATC 2 cut(s) 256, 852
MaeI CTAG 5 cut(s) 38, 497, 669, 818, 1143
MaeII ACGT 3 cut(s) 217, 243, 365
MaeIII GTNAC 4 cut(s) 161, 188, 725, 1079
MalI GATC 7 cut(s) 53, 78, 273, 336, 619, 652, 856
MboI GATC 7 cut(s) 51, 76, 271, 334, 617, 650, 854
MboII GAAGA 2 cut(s) 598, 1127
MflI RGATCY 2 cut(s) 650, 854
MhlI GDGCHC 1 cut(s) 513
MmeI TCCRAC 1 cut(s) 914
MnlI CCTC 6 cut(s) 36, 278, 454, 735, 973, 1005
MseI TTAA 7 cut(s) 281, 380, 491, 537, 575, 999, 1059
MslI CAYNNNNRTG 4 cut(s) 128, 516, 714, 882
MspA1I CMGCKG 1 cut(s) 548
MspCI CTTAAG 1 cut(s) 280
MspI CCGG 1 cut(s) 1070
MspR9I CCNGG 2 cut(s) 1070, 1071
NciI CCSGG 2 cut(s) 1070, 1071
NdeII GATC 7 cut(s) 51, 76, 271, 334, 617, 650, 854
NlaIII CATG 5 cut(s) 127, 311, 479, 635, 837
NmuCI GTSAC 3 cut(s) 161, 725, 1079
NspI RCATGY 1 cut(s) 127
OliI CACNNNNGTG 2 cut(s) 516, 882
PaeR7I CTCGAG 1 cut(s) 603
PciI ACATGT 1 cut(s) 123
PcsI WCGNNNNNNNCGW 1 cut(s) 214
PfeI GAWTC 2 cut(s) 116, 542
PflMI CCANNNNNTGG 1 cut(s) 972
Ppu21I YACGTR 1 cut(s) 218
PscI ACATGT 1 cut(s) 123
PspEI GGTNACC 1 cut(s) 725
PspPI GGNCC 4 cut(s) 665, 706, 765, 975
PsuI RGATCY 2 cut(s) 650, 854
PvuII CAGCTG 1 cut(s) 548
RsaI GTAC 3 cut(s) 216, 358, 1035
RsaNI GTAC 3 cut(s) 215, 357, 1034
RseI CAYNNNNRTG 4 cut(s) 128, 516, 714, 882
SaqAI TTAA 7 cut(s) 281, 380, 491, 537, 575, 999, 1059
Sau3AI GATC 7 cut(s) 51, 76, 271, 334, 617, 650, 854
Sau96I GGNCC 4 cut(s) 665, 706, 765, 975
ScrFI CCNGG 2 cut(s) 1070, 1071
SduI GDGCHC 1 cut(s) 513
SfaNI GCATC 2 cut(s) 256, 852
SfcI CTRYAG 1 cut(s) 514
Sfr274I CTCGAG 1 cut(s) 603
SinI GGWCC 2 cut(s) 706, 975
SlaI CTCGAG 1 cut(s) 603
SmaI CCCGGG 1 cut(s) 1071
SmiMI CAYNNNNRTG 4 cut(s) 128, 516, 714, 882
SmlI CTYRAG 2 cut(s) 280, 603
SmoI CTYRAG 2 cut(s) 280, 603
SnaBI TACGTA 1 cut(s) 218
SspI AATATT 1 cut(s) 404
SspMI CTAG 5 cut(s) 38, 497, 669, 818, 1143
StyD4I CCNGG 2 cut(s) 1068, 1069
StyI CCWWGG 1 cut(s) 251
TaaI ACNGT 1 cut(s) 515
TaiI ACGT 3 cut(s) 220, 246, 368
TaqI TCGA 3 cut(s) 208, 459, 604
TaqII GACCGA 1 cut(s) 694
TatI WGTACW 1 cut(s) 356
TfiI GAWTC 2 cut(s) 116, 542
Tru1I TTAA 7 cut(s) 281, 380, 491, 537, 575, 999, 1059
Tru9I TTAA 7 cut(s) 281, 380, 491, 537, 575, 999, 1059
TscAI CASTG 1 cut(s) 518
TseFI GTSAC 3 cut(s) 161, 725, 1079
Tsp45I GTSAC 3 cut(s) 161, 725, 1079
TspDTI ATGAA 3 cut(s) 414, 545, 1105
TspGWI ACGGA 1 cut(s) 663
TspMI CCCGGG 1 cut(s) 1069
TspRI CASTG 1 cut(s) 518
Van91I CCANNNNNTGG 1 cut(s) 972
Vha464I CTTAAG 1 cut(s) 280
VpaK11BI GGWCC 2 cut(s) 706, 975
XapI RAATTY 4 cut(s) 445, 684, 759, 956
XceI RCATGY 1 cut(s) 127
XhoI CTCGAG 1 cut(s) 603
XmaI CCCGGG 1 cut(s) 1069
XspI CTAG 5 cut(s) 38, 497, 669, 818, 1143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.