Rmu_sc0006653.1_g000007

AT-rich interactive domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006653.1
OG0018237
Physical Location & Seq
Reverse (-)
34331 .. 36422
2092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006653.1_g000007.1.cds

Sequence Viewer

Length: 1524 bp
atgacatctcccgataatctagggagtaatgtgatcaaaggttctttgcccaatggagatcagcgagaaagaaaatcgtcatctggcttctgtactgattctgacatgttggtgtggttgaaagcacttgcattagacccttgtaaccaaaatgcacccataggttcaagtaacaaattactgaatgttcgaacagtacgtaaacttttacttcgttgtaatgacgtgtatccttggagtaagcgtaaacttgatcagttcttaataggtagtagatacattggcacacatgcagtaactacaaataattttgatgatcatactgccaaaagagtttgtacagatacgttttgctcatccttcaccattacaaacaagaacaatgaatatttcaagccaaaacttgtttgtgcaaataacttttcaggaaatttgttggtcatcgaggataaatcaactcatggttcggtgatattaagactaggcaacaagtcaaagcactgtagtgcaaccacaatgaatgttaatgattcagctgattactcaaaacttgaaagagtattaaggtcaaagaagagaaacttgagggatcgagagacattgagatcgccattttcacgtggcaagtatttccacggatctgttcctattgggcctagttttcaagctgaaattcctgaatggacaggttcggtccacctttatggtaatggtgacccaaaagttttgaggtggttgggcatacgaatttggcccatcaaaggaaaaaaatcaagtgttgagaccactataaaaaccattggactggggagacctacatcatgttcttgcatctctccaagatctattggttgtgtcaaacaccacattagtgaagcaagacttaggttgcaagatgagattgggtctgccttttggagttggaagtttgatgagatgggagaatttacctccaagtcgtggaccttgaaagaacagacaactattaaatctcttgtgaggagaaatcaattgtcaaaggtactaagttctttgaagcttgcttttaagtatttcccggagttaggtcgcactccatttgtacatagacatcaggtgaagagaggttttaagtttgaagagttctgggccagacatagggattgtgatgctattgttacaaaaggctgggcgaatcctattactgatgatcccataaagcaagtgtgccttaagattagctccactagtaagtttttacaaacttggcaacatggagtgttttgccacggtagagaagagttacaggccatccagcagaggttgcaatcgttaattagtgccccattcttagtggcacatgtggaagagaagaaatctcttaatgcaagatttcaagaactgcaaactatggaagagacttactggagacagttgattggcttaaggatggagataagaacaccgcttatatccatcgacgagcgtccaatgagaagcatcgtaacactatccagggaactactgagtccgggcaatgggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ELM2

Protein Analysis

507

Amino Acids

57.75

Weight (kDa)

9.74

Isoelectric Point (pI)

39.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018237)

Species Orthologous Gene IDs
rosa_laevigata RLG00000023193 RLG00000023203
rosa_multiflora Rmu_sc0006653.1_g000007
rosa_roxburghii Rroxscaffold_6G00397400 Rroxscaffold_6G00397420
rosa_rugosa Rorug03G0210700
rosa_samantha Rh2AG350100 Rh3BG299300 Rh3BG299700 Rh3DG292900
rosa_wichuraiana Rw3G023570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 960
AciI CCGC 1 cut(s) 1445
AclWI GGATC 3 cut(s) 597, 646, 1184
AcsI RAATTY 4 cut(s) 430, 672, 747, 944
AcvI CACGTG 1 cut(s) 620
AfaI GTAC 5 cut(s) 94, 198, 340, 1023, 1083
AfiI CCNNNNNNNGG 5 cut(s) 761, 960, 1064, 1137, 1517
AflII CTTAAG 2 cut(s) 1211, 1423
AflIII ACRYGT 3 cut(s) 105, 225, 1339
AgsI TTSAA 9 cut(s) 121, 168, 394, 554, 665, 970, 1036, 1118, 1376
AhlI ACTAGT 1 cut(s) 1226
AjiI CACGTC 1 cut(s) 226
AjnI CCWGG 1 cut(s) 1493
AleI CACNNNNGTG 2 cut(s) 504, 870
AluBI AGCT 4 cut(s) 536, 668, 1039, 1221
AluI AGCT 4 cut(s) 536, 668, 1039, 1221
Alw26I GTCTC 5 cut(s) 590, 776, 805, 1391, 1402
AlwI GGATC 3 cut(s) 597, 646, 1184
AoxI GGCC 4 cut(s) 653, 752, 1128, 1287
ApoI RAATTY 4 cut(s) 430, 672, 747, 944
AspS9I GGNCC 5 cut(s) 653, 694, 753, 963, 1128
AsuC2I CCSGG 2 cut(s) 1058, 1512
AsuHPI GGTGA 4 cut(s) 355, 481, 725, 1108
AsuII TTCGAA 1 cut(s) 190
AvaII GGWCC 2 cut(s) 694, 963
BaeGI GKGCMC 1 cut(s) 1324
BbrPI CACGTG 1 cut(s) 620
BccI CCATC 5 cut(s) 764, 931, 1298, 1423, 1463
BciT130I CCWGG 1 cut(s) 1495
BciVI GTATCC 1 cut(s) 240
BclI TGATCA 3 cut(s) 33, 253, 316
BcnI CCSGG 2 cut(s) 1058, 1512
BcoDI GTCTC 5 cut(s) 590, 776, 805, 1391, 1402
BcuI ACTAGT 1 cut(s) 1226
BfaI CTAG 4 cut(s) 20, 482, 657, 1227
BfmI CTRYAG 1 cut(s) 502
BfrI CTTAAG 2 cut(s) 1211, 1423
BfuI GTATCC 1 cut(s) 240
BglII AGATCT 1 cut(s) 842
Bme1390I CCNGG 3 cut(s) 1058, 1495, 1512
Bme18I GGWCC 2 cut(s) 694, 963
BmgBI CACGTC 1 cut(s) 226
BmgT120I GGNCC 5 cut(s) 653, 694, 753, 963, 1128
BmrFI CCNGG 3 cut(s) 1058, 1495, 1512
BmrI ACTGGG 1 cut(s) 815
BmsI GCATC 3 cut(s) 840, 1138, 1488
BmuI ACTGGG 1 cut(s) 815
BoxI GACNNNNGTC 1 cut(s) 1464
BpmI CTGGAG 1 cut(s) 1426
Bpu14I TTCGAA 1 cut(s) 190
BpuEI CTTGAG 1 cut(s) 604
BpuMI CCSGG 2 cut(s) 1058, 1512
BsaAI YACGTR 2 cut(s) 200, 620
BsaI GGTCTC 2 cut(s) 776, 805
BsaJI CCNNGG 4 cut(s) 233, 634, 1267, 1494
BsaXI ACNNNNNCTCC 2 cut(s) 229, 259
Bsc4I CCNNNNNNNGG 5 cut(s) 761, 960, 1064, 1137, 1517
Bse1I ACTGG 2 cut(s) 810, 1409
Bse3DI GCAATG 1 cut(s) 1522
BseBI CCWGG 1 cut(s) 1495
BseDI CCNNGG 4 cut(s) 233, 634, 1267, 1494
BseGI GGATG 3 cut(s) 356, 1290, 1434
BseLI CCNNNNNNNGG 5 cut(s) 761, 960, 1064, 1137, 1517
BseMI GCAATG 1 cut(s) 1522
BseMII CTCAG 1 cut(s) 1496
BseNI ACTGG 2 cut(s) 810, 1409
BseRI GAGGAG 1 cut(s) 1015
BseSI GKGCMC 1 cut(s) 1324
BseYI CCCAGC 1 cut(s) 1167
BshFI GGCC 4 cut(s) 655, 754, 1130, 1289
BsiSI CCGG 2 cut(s) 1058, 1511
BslI CCNNNNNNNGG 5 cut(s) 761, 960, 1064, 1137, 1517
BsmAI GTCTC 5 cut(s) 590, 776, 805, 1391, 1402
BsnI GGCC 4 cut(s) 655, 754, 1130, 1289
Bso31I GGTCTC 2 cut(s) 776, 805
Bsp119I TTCGAA 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 1324
Bsp1407I TGTACA 2 cut(s) 338, 1081
Bsp143I GATC 9 cut(s) 33, 58, 253, 316, 589, 605, 638, 842, 1189
BspACI CCGC 1 cut(s) 1445
BspANI GGCC 4 cut(s) 655, 754, 1130, 1289
BspCNI CTCAG 1 cut(s) 1497
BspPI GGATC 3 cut(s) 597, 646, 1184
BspT104I TTCGAA 1 cut(s) 190
BspTI CTTAAG 2 cut(s) 1211, 1423
BspTNI GGTCTC 2 cut(s) 776, 805
BsrDI GCAATG 1 cut(s) 1522
BsrGI TGTACA 2 cut(s) 338, 1081
BsrI ACTGG 2 cut(s) 810, 1409
BssECI CCNNGG 4 cut(s) 233, 634, 1267, 1494
BssMI GATC 9 cut(s) 33, 58, 253, 316, 589, 605, 638, 842, 1189
BssT1I CCWWGG 1 cut(s) 233
Bst2UI CCWGG 1 cut(s) 1495
Bst4CI ACNGT 4 cut(s) 196, 503, 1271, 1413
Bst6I CTCTTC 6 cut(s) 569, 1094, 1113, 1272, 1341, 1389
BstAFI CTTAAG 2 cut(s) 1211, 1423
BstAPI GCANNNNNTGC 1 cut(s) 1303
BstAUI TGTACA 2 cut(s) 338, 1081
BstBAI YACGTR 2 cut(s) 200, 620
BstBI TTCGAA 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 1041
BstDEI CTNAG 4 cut(s) 884, 1025, 1330, 1505
BstDSI CCRYGG 2 cut(s) 634, 1267
BstEII GGTNACC 1 cut(s) 713
BstF5I GGATG 3 cut(s) 356, 1290, 1434
BstKTI GATC 9 cut(s) 36, 61, 256, 319, 592, 608, 641, 845, 1192
BstMAI GTCTC 5 cut(s) 590, 776, 805, 1391, 1402
BstMBI GATC 9 cut(s) 33, 58, 253, 316, 589, 605, 638, 842, 1189
BstMWI GCNNNNNNNGC 1 cut(s) 1303
BstNI CCWGG 1 cut(s) 1495
BstNSI RCATGY 3 cut(s) 109, 293, 1343
BstPAI GACNNNNGTC 1 cut(s) 1464
BstPI GGTNACC 1 cut(s) 713
BstSCI CCNGG 3 cut(s) 1056, 1493, 1510
BstSFI CTRYAG 1 cut(s) 502
BstSLI GKGCMC 1 cut(s) 1324
BstSNI TACGTA 1 cut(s) 200
BstX2I RGATCY 2 cut(s) 638, 842
BstXI CCANNNNNNTGG 2 cut(s) 704, 805
BstYI RGATCY 2 cut(s) 638, 842
BsuI GTATCC 1 cut(s) 240
BsuRI GGCC 4 cut(s) 655, 754, 1130, 1289
BtgI CCRYGG 2 cut(s) 634, 1267
BtrI CACGTC 1 cut(s) 226
BtsCI GGATG 3 cut(s) 356, 1290, 1434
BtsIMutI CAGTG 1 cut(s) 499
Cac8I GCNNGC 1 cut(s) 1041
Cfr13I GGNCC 5 cut(s) 653, 694, 753, 963, 1128
CseI GACGC 1 cut(s) 1454
Csp6I GTAC 5 cut(s) 93, 197, 339, 1022, 1082
CviAII CATG 6 cut(s) 106, 290, 461, 822, 1253, 1340
CviQI GTAC 5 cut(s) 93, 197, 339, 1022, 1082
DdeI CTNAG 4 cut(s) 884, 1025, 1330, 1505
DpnI GATC 9 cut(s) 35, 60, 255, 318, 591, 607, 640, 844, 1191
DpnII GATC 9 cut(s) 33, 58, 253, 316, 589, 605, 638, 842, 1189
Eam1104I CTCTTC 6 cut(s) 569, 1094, 1113, 1272, 1341, 1389
EarI CTCTTC 6 cut(s) 569, 1094, 1113, 1272, 1341, 1389
Eco105I TACGTA 1 cut(s) 200
Eco130I CCWWGG 1 cut(s) 233
Eco31I GGTCTC 2 cut(s) 776, 805
Eco47I GGWCC 2 cut(s) 694, 963
Eco72I CACGTG 1 cut(s) 620
Eco91I GGTNACC 1 cut(s) 713
EcoO65I GGTNACC 1 cut(s) 713
EcoRII CCWGG 1 cut(s) 1493
EcoT14I CCWWGG 1 cut(s) 233
ErhI CCWWGG 1 cut(s) 233
FaeI CATG 6 cut(s) 109, 293, 464, 825, 1256, 1343
FalI AAGNNNNNCTT 6 cut(s) 566, 598, 867, 899, 1194, 1226
FatI CATG 6 cut(s) 105, 289, 460, 821, 1252, 1339
FbaI TGATCA 3 cut(s) 33, 253, 316
FokI GGATG 3 cut(s) 343, 1277, 1441
FspBI CTAG 4 cut(s) 20, 482, 657, 1227
GsaI CCCAGC 1 cut(s) 1171
GsuI CTGGAG 1 cut(s) 1426
HaeIII GGCC 4 cut(s) 655, 754, 1130, 1289
HapII CCGG 2 cut(s) 1058, 1511
HgaI GACGC 1 cut(s) 1454
Hin1II CATG 6 cut(s) 109, 293, 464, 825, 1256, 1343
HindIII AAGCTT 1 cut(s) 1037
HinfI GANTC 4 cut(s) 98, 530, 1174, 1507
HpaII CCGG 2 cut(s) 1058, 1511
HphI GGTGA 4 cut(s) 355, 481, 725, 1108
Hpy166II GTNNAC 4 cut(s) 203, 248, 697, 963
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 5 cut(s) 11, 426, 593, 677, 1376
Hpy8I GTNNAC 4 cut(s) 203, 248, 697, 963
Hpy99I CGWCG 1 cut(s) 1463
HpyAV CCTTC 1 cut(s) 370
HpyCH4III ACNGT 4 cut(s) 196, 503, 1271, 1413
HpyCH4IV ACGT 4 cut(s) 199, 225, 347, 619
HpyF10VI GCNNNNNNNGC 1 cut(s) 1303
HpyF3I CTNAG 4 cut(s) 884, 1025, 1330, 1505
HpySE526I ACGT 4 cut(s) 199, 225, 347, 619
Hsp92II CATG 6 cut(s) 109, 293, 464, 825, 1256, 1343
Ksp22I TGATCA 3 cut(s) 33, 253, 316
Kzo9I GATC 9 cut(s) 33, 58, 253, 316, 589, 605, 638, 842, 1189
LmnI GCTCC 1 cut(s) 1226
LweI GCATC 3 cut(s) 840, 1138, 1488
MaeI CTAG 4 cut(s) 20, 482, 657, 1227
MaeII ACGT 4 cut(s) 199, 225, 347, 619
MaeIII GTNAC 7 cut(s) 143, 170, 295, 713, 1156, 1281, 1483
MalI GATC 9 cut(s) 35, 60, 255, 318, 591, 607, 640, 844, 1191
MboI GATC 9 cut(s) 33, 58, 253, 316, 589, 605, 638, 842, 1189
MboII GAAGA 7 cut(s) 586, 1111, 1130, 1289, 1358, 1363, 1406
MfeI CAATTG 1 cut(s) 1010
MflI RGATCY 2 cut(s) 638, 842
MhlI GDGCHC 1 cut(s) 1324
MluCI AATT 8 cut(s) 176, 307, 430, 672, 747, 944, 1010, 1314
MlyI GAGTC 1 cut(s) 1516
MmeI TCCRAC 1 cut(s) 902
MnlI CCTC 7 cut(s) 439, 579, 723, 961, 993, 1097, 1293
MslI CAYNNNNRTG 4 cut(s) 110, 504, 702, 870
MspA1I CMGCKG 1 cut(s) 536
MspCI CTTAAG 2 cut(s) 1211, 1423
MspI CCGG 2 cut(s) 1058, 1511
MspR9I CCNGG 3 cut(s) 1058, 1495, 1512
MunI CAATTG 1 cut(s) 1010
MvaI CCWGG 1 cut(s) 1495
MwoI GCNNNNNNNGC 1 cut(s) 1303
NciI CCSGG 2 cut(s) 1058, 1512
NdeII GATC 9 cut(s) 33, 58, 253, 316, 589, 605, 638, 842, 1189
NlaIII CATG 6 cut(s) 109, 293, 464, 825, 1256, 1343
NmuCI GTSAC 1 cut(s) 713
NspI RCATGY 3 cut(s) 109, 293, 1343
NspV TTCGAA 1 cut(s) 190
OliI CACNNNNGTG 2 cut(s) 504, 870
PciI ACATGT 2 cut(s) 105, 1339
PcsI WCGNNNNNNNCGW 1 cut(s) 196
PfeI GAWTC 3 cut(s) 98, 530, 1174
PflMI CCANNNNNTGG 1 cut(s) 960
PfoI TCCNGGA 1 cut(s) 1056
PleI GAGTC 1 cut(s) 1515
PmaCI CACGTG 1 cut(s) 620
PmlI CACGTG 1 cut(s) 620
PpsI GAGTC 1 cut(s) 1515
Ppu21I YACGTR 2 cut(s) 200, 620
PscI ACATGT 2 cut(s) 105, 1339
PshAI GACNNNNGTC 1 cut(s) 1464
Psp6I CCWGG 1 cut(s) 1493
PspCI CACGTG 1 cut(s) 620
PspEI GGTNACC 1 cut(s) 713
PspFI CCCAGC 1 cut(s) 1167
PspGI CCWGG 1 cut(s) 1493
PspPI GGNCC 5 cut(s) 653, 694, 753, 963, 1128
PsuI RGATCY 2 cut(s) 638, 842
PvuII CAGCTG 1 cut(s) 536
RsaI GTAC 5 cut(s) 94, 198, 340, 1023, 1083
RsaNI GTAC 5 cut(s) 93, 197, 339, 1022, 1082
RseI CAYNNNNRTG 4 cut(s) 110, 504, 702, 870
Sau3AI GATC 9 cut(s) 33, 58, 253, 316, 589, 605, 638, 842, 1189
Sau96I GGNCC 5 cut(s) 653, 694, 753, 963, 1128
SchI GAGTC 1 cut(s) 1516
ScrFI CCNGG 3 cut(s) 1058, 1495, 1512
SduI GDGCHC 1 cut(s) 1324
SfaNI GCATC 3 cut(s) 840, 1138, 1488
SfcI CTRYAG 1 cut(s) 502
SfuI TTCGAA 1 cut(s) 190
SinI GGWCC 2 cut(s) 694, 963
SmiMI CAYNNNNRTG 4 cut(s) 110, 504, 702, 870
SmlI CTYRAG 3 cut(s) 583, 1211, 1423
SmoI CTYRAG 3 cut(s) 583, 1211, 1423
SnaBI TACGTA 1 cut(s) 200
SpeI ACTAGT 1 cut(s) 1226
Sse9I AATT 8 cut(s) 176, 307, 430, 672, 747, 944, 1010, 1314
SsiI CCGC 1 cut(s) 1445
SspI AATATT 1 cut(s) 389
SspMI CTAG 4 cut(s) 20, 482, 657, 1227
StyD4I CCNGG 3 cut(s) 1056, 1493, 1510
StyI CCWWGG 1 cut(s) 233
TaaI ACNGT 4 cut(s) 196, 503, 1271, 1413
TaiI ACGT 4 cut(s) 202, 228, 350, 622
TaqI TCGA 4 cut(s) 190, 444, 592, 1458
TaqII GACCGA 1 cut(s) 682
TasI AATT 8 cut(s) 176, 307, 430, 672, 747, 944, 1010, 1314
TatI WGTACW 3 cut(s) 92, 338, 1081
TfiI GAWTC 3 cut(s) 98, 530, 1174
TscAI CASTG 1 cut(s) 506
TseFI GTSAC 1 cut(s) 713
Tsp45I GTSAC 1 cut(s) 713
TspDTI ATGAA 2 cut(s) 399, 533
TspGWI ACGGA 1 cut(s) 651
TspRI CASTG 1 cut(s) 506
Van91I CCANNNNNTGG 1 cut(s) 960
Vha464I CTTAAG 2 cut(s) 1211, 1423
VpaK11BI GGWCC 2 cut(s) 694, 963
XapI RAATTY 4 cut(s) 430, 672, 747, 944
XceI RCATGY 3 cut(s) 109, 293, 1343
XspI CTAG 4 cut(s) 20, 482, 657, 1227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.