Rh3DG292900

AT-rich interactive domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0018237
Physical Location & Seq
Reverse (-)
30375743 .. 30377916
2174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG292900.1

Sequence Viewer

Length: 1542 bp
ATGTGTCAACAATTTAGAATGACATCTCCCGATAATCTAGGGAGTAATGTGATCAAAGGTTCTTTGCCCAATGGAGATCAGCGAGAAAGAAAATCGTCATCTGGCTTCTGTACTGATTCTGACATGTTGGTGTGGTTGAAAGCACTTGCATTAGACCCTTGTAACCAAAATGCACCCATAGGTTCAAGTAACAAATTACTGAATGTTCGAACAGTACGTAAACTTTTGCTTCGTTGTAATGACGTGTATCCTTGGAGTAAGCGTAAACTTGATCAGTTCTTAATAGGTAGTAGATACATTGGCACTCATGCAGTAACTACAAATAATTTTGATGATCATACTGCCAAAAGAGTTTGTACAGATACGTTTTGCTCATCCTTAACCATTACAAACAAGAACAATGAATATTTCAAGCCAAAACTTGTTTGTGCAAATAACTTTTCAGGAAATTTGTTGGTCATCGAGGATAAATCAACTCATGGTTCGGTGATATTAAGACTAGGCAACAAGTCAAAGCACTGTAGTGCAACCACAATGAATGTTAATGATTCAGCTGATTACTCAAAACTTGAAAGAGTATTAAGGTCAAAGAAGAGAAACTTGAGGGATCGAGAGACATTGAGATCGCCATTTTCACGTGGCAAGTATTTCCACGGATCTGTTCCTATTGGGCCTAGTTTTCAAGCTGAAATTCCTGAATGGACAGGTTCGGTCCACCTTTATGGTAATGGTGACCCAAAAGTTTTGAGGTGGTTGGGCATACGAATTTGGCCCATCAAAGGAAAAAAATCAAGTGTTGAGACCACTATAAAAACCATTGGACTGGGGAGACCTACATCATGTTCTTGCATCTCTCCAAGATCTATTGGTTGTGTCAAACACCACATTAGTGAAGCAAGACTTAGGTTGCAAGATGAGATTGGGTCTGCCTTTTGGAGTTGGAAGTTTGATGAGATGGGAGAATTTACCTCCAAGTCGTGGACCTTGAAAGAACAGACAACTATTAAATCTCTTGTGAGGAGAAATCAATTATCAAAGGTACTAAGTTCTTTGAAGCTTGCTTTTAAGTATTTCCCGGAGTTAGGTCGCACTCCATTTGTACCTAGACATCAGGTGAAGAGAAGTTTTAAGTTTGAAGAGTTCTGGGCCAGACATAGGGATTGTGATGCTATTGTTACAAAAGGCTGGGCGAATCCTATTACTGATGATCCCATAAAGCAAGTGTGCCTTAAGATTAGCTCCACTAGTAAGTTTTTACAAACTTGGCAACATGGAGTGTTTTGCCACGGTAGAGAAGAGTTACAGGCCATCCAGCAGAGGTTGCAATCGTTAATTAGTGCCCCATTCTTAGTGGCACATGTGGAAGAGAAGAAATCTCTTAATGCAGGATTTCAAGAACTGCAAACTATGGAAGAGACTTACTGGAGACAGTTGATTGGCTTAAGGATGGAGATAAGAACACCGCTTATATCCATCGACGAGCGTCCAATGAGAAGCATCGTAACACTATCCAGGGACATACTGAGTCCGGGCAATGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ELM2

Protein Analysis

513

Amino Acids

58.39

Weight (kDa)

9.72

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018237)

Species Orthologous Gene IDs
rosa_laevigata RLG00000023193 RLG00000023203
rosa_multiflora Rmu_sc0006653.1_g000007
rosa_roxburghii Rroxscaffold_6G00397400 Rroxscaffold_6G00397420
rosa_rugosa Rorug03G0210700
rosa_samantha Rh2AG350100 Rh3BG299300 Rh3BG299700 Rh3DG292900
rosa_wichuraiana Rw3G023570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 978
AciI CCGC 1 cut(s) 1463
AclWI GGATC 3 cut(s) 615, 664, 1202
AcsI RAATTY 4 cut(s) 448, 690, 765, 962
AcvI CACGTG 1 cut(s) 638
AfaI GTAC 5 cut(s) 112, 216, 358, 1041, 1101
AfiI CCNNNNNNNGG 5 cut(s) 779, 978, 1082, 1155, 1535
AflII CTTAAG 2 cut(s) 1229, 1441
AflIII ACRYGT 3 cut(s) 123, 243, 1357
AgsI TTSAA 9 cut(s) 139, 186, 412, 572, 683, 988, 1054, 1136, 1394
AhlI ACTAGT 1 cut(s) 1244
AjiI CACGTC 1 cut(s) 244
AjnI CCWGG 1 cut(s) 1511
AleI CACNNNNGTG 2 cut(s) 522, 888
AluBI AGCT 4 cut(s) 554, 686, 1057, 1239
AluI AGCT 4 cut(s) 554, 686, 1057, 1239
Alw26I GTCTC 5 cut(s) 608, 794, 823, 1409, 1420
AlwI GGATC 3 cut(s) 615, 664, 1202
AoxI GGCC 4 cut(s) 671, 770, 1146, 1305
ApoI RAATTY 4 cut(s) 448, 690, 765, 962
AspS9I GGNCC 5 cut(s) 671, 712, 771, 981, 1146
AsuC2I CCSGG 2 cut(s) 1076, 1530
AsuHPI GGTGA 3 cut(s) 499, 743, 1126
AsuII TTCGAA 1 cut(s) 208
AvaII GGWCC 2 cut(s) 712, 981
BaeGI GKGCMC 1 cut(s) 1342
BbrPI CACGTG 1 cut(s) 638
BccI CCATC 5 cut(s) 782, 949, 1316, 1441, 1481
BciT130I CCWGG 1 cut(s) 1513
BciVI GTATCC 1 cut(s) 258
BclI TGATCA 3 cut(s) 51, 271, 334
BcnI CCSGG 2 cut(s) 1076, 1530
BcoDI GTCTC 5 cut(s) 608, 794, 823, 1409, 1420
BcuI ACTAGT 1 cut(s) 1244
BfaI CTAG 5 cut(s) 38, 500, 675, 1104, 1245
BfmI CTRYAG 1 cut(s) 520
BfrI CTTAAG 2 cut(s) 1229, 1441
BfuI GTATCC 1 cut(s) 258
BglII AGATCT 1 cut(s) 860
Bme1390I CCNGG 3 cut(s) 1076, 1513, 1530
Bme18I GGWCC 2 cut(s) 712, 981
BmgBI CACGTC 1 cut(s) 244
BmgT120I GGNCC 5 cut(s) 671, 712, 771, 981, 1146
BmrFI CCNGG 3 cut(s) 1076, 1513, 1530
BmrI ACTGGG 1 cut(s) 833
BmsI GCATC 3 cut(s) 858, 1156, 1506
BmuI ACTGGG 1 cut(s) 833
BoxI GACNNNNGTC 1 cut(s) 1482
BpmI CTGGAG 1 cut(s) 1444
Bpu14I TTCGAA 1 cut(s) 208
BpuEI CTTGAG 1 cut(s) 622
BpuMI CCSGG 2 cut(s) 1076, 1530
BsaAI YACGTR 2 cut(s) 218, 638
BsaI GGTCTC 2 cut(s) 794, 823
BsaJI CCNNGG 4 cut(s) 251, 652, 1285, 1512
BsaXI ACNNNNNCTCC 2 cut(s) 247, 277
Bsc4I CCNNNNNNNGG 5 cut(s) 779, 978, 1082, 1155, 1535
Bse1I ACTGG 2 cut(s) 828, 1427
Bse3DI GCAATG 1 cut(s) 1540
BseBI CCWGG 1 cut(s) 1513
BseDI CCNNGG 4 cut(s) 251, 652, 1285, 1512
BseGI GGATG 3 cut(s) 374, 1308, 1452
BseLI CCNNNNNNNGG 5 cut(s) 779, 978, 1082, 1155, 1535
BseMI GCAATG 1 cut(s) 1540
BseMII CTCAG 1 cut(s) 1514
BseNI ACTGG 2 cut(s) 828, 1427
BseRI GAGGAG 1 cut(s) 1033
BseSI GKGCMC 1 cut(s) 1342
BseYI CCCAGC 1 cut(s) 1185
BshFI GGCC 4 cut(s) 673, 772, 1148, 1307
BsiSI CCGG 2 cut(s) 1076, 1529
BslFI GGGAC 1 cut(s) 1529
BslI CCNNNNNNNGG 5 cut(s) 779, 978, 1082, 1155, 1535
BsmAI GTCTC 5 cut(s) 608, 794, 823, 1409, 1420
BsmFI GGGAC 1 cut(s) 1529
BsnI GGCC 4 cut(s) 673, 772, 1148, 1307
Bso31I GGTCTC 2 cut(s) 794, 823
Bsp119I TTCGAA 1 cut(s) 208
Bsp1286I GDGCHC 1 cut(s) 1342
Bsp1407I TGTACA 1 cut(s) 356
Bsp143I GATC 9 cut(s) 51, 76, 271, 334, 607, 623, 656, 860, 1207
BspACI CCGC 1 cut(s) 1463
BspANI GGCC 4 cut(s) 673, 772, 1148, 1307
BspCNI CTCAG 1 cut(s) 1515
BspPI GGATC 3 cut(s) 615, 664, 1202
BspT104I TTCGAA 1 cut(s) 208
BspTI CTTAAG 2 cut(s) 1229, 1441
BspTNI GGTCTC 2 cut(s) 794, 823
BsrDI GCAATG 1 cut(s) 1540
BsrGI TGTACA 1 cut(s) 356
BsrI ACTGG 2 cut(s) 828, 1427
BssECI CCNNGG 4 cut(s) 251, 652, 1285, 1512
BssMI GATC 9 cut(s) 51, 76, 271, 334, 607, 623, 656, 860, 1207
BssT1I CCWWGG 1 cut(s) 251
Bst2UI CCWGG 1 cut(s) 1513
Bst4CI ACNGT 4 cut(s) 214, 521, 1289, 1431
Bst6I CTCTTC 6 cut(s) 587, 1112, 1131, 1290, 1359, 1407
BstAFI CTTAAG 2 cut(s) 1229, 1441
BstAPI GCANNNNNTGC 1 cut(s) 1321
BstAUI TGTACA 1 cut(s) 356
BstBAI YACGTR 2 cut(s) 218, 638
BstBI TTCGAA 1 cut(s) 208
BstC8I GCNNGC 1 cut(s) 1059
BstDEI CTNAG 4 cut(s) 902, 1043, 1348, 1523
BstDSI CCRYGG 2 cut(s) 652, 1285
BstEII GGTNACC 1 cut(s) 731
BstF5I GGATG 3 cut(s) 374, 1308, 1452
BstKTI GATC 9 cut(s) 54, 79, 274, 337, 610, 626, 659, 863, 1210
BstMAI GTCTC 5 cut(s) 608, 794, 823, 1409, 1420
BstMBI GATC 9 cut(s) 51, 76, 271, 334, 607, 623, 656, 860, 1207
BstMWI GCNNNNNNNGC 1 cut(s) 1321
BstNI CCWGG 1 cut(s) 1513
BstNSI RCATGY 2 cut(s) 127, 1361
BstPAI GACNNNNGTC 1 cut(s) 1482
BstPI GGTNACC 1 cut(s) 731
BstSCI CCNGG 3 cut(s) 1074, 1511, 1528
BstSFI CTRYAG 1 cut(s) 520
BstSLI GKGCMC 1 cut(s) 1342
BstSNI TACGTA 1 cut(s) 218
BstX2I RGATCY 2 cut(s) 656, 860
BstXI CCANNNNNNTGG 2 cut(s) 722, 823
BstYI RGATCY 2 cut(s) 656, 860
BsuI GTATCC 1 cut(s) 258
BsuRI GGCC 4 cut(s) 673, 772, 1148, 1307
BtgI CCRYGG 2 cut(s) 652, 1285
BtrI CACGTC 1 cut(s) 244
BtsCI GGATG 3 cut(s) 374, 1308, 1452
BtsIMutI CAGTG 1 cut(s) 517
Cac8I GCNNGC 1 cut(s) 1059
Cfr13I GGNCC 5 cut(s) 671, 712, 771, 981, 1146
CseI GACGC 1 cut(s) 1472
Csp6I GTAC 5 cut(s) 111, 215, 357, 1040, 1100
CviAII CATG 6 cut(s) 124, 308, 479, 840, 1271, 1358
CviQI GTAC 5 cut(s) 111, 215, 357, 1040, 1100
DdeI CTNAG 4 cut(s) 902, 1043, 1348, 1523
DpnI GATC 9 cut(s) 53, 78, 273, 336, 609, 625, 658, 862, 1209
DpnII GATC 9 cut(s) 51, 76, 271, 334, 607, 623, 656, 860, 1207
Eam1104I CTCTTC 6 cut(s) 587, 1112, 1131, 1290, 1359, 1407
EarI CTCTTC 6 cut(s) 587, 1112, 1131, 1290, 1359, 1407
Eco105I TACGTA 1 cut(s) 218
Eco130I CCWWGG 1 cut(s) 251
Eco31I GGTCTC 2 cut(s) 794, 823
Eco47I GGWCC 2 cut(s) 712, 981
Eco72I CACGTG 1 cut(s) 638
Eco91I GGTNACC 1 cut(s) 731
EcoO65I GGTNACC 1 cut(s) 731
EcoRII CCWGG 1 cut(s) 1511
EcoT14I CCWWGG 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 251
FaeI CATG 6 cut(s) 127, 311, 482, 843, 1274, 1361
FalI AAGNNNNNCTT 6 cut(s) 584, 616, 885, 917, 1212, 1244
FaqI GGGAC 1 cut(s) 1529
FatI CATG 6 cut(s) 123, 307, 478, 839, 1270, 1357
FbaI TGATCA 3 cut(s) 51, 271, 334
FokI GGATG 3 cut(s) 361, 1295, 1459
FspBI CTAG 5 cut(s) 38, 500, 675, 1104, 1245
GsaI CCCAGC 1 cut(s) 1189
GsuI CTGGAG 1 cut(s) 1444
HaeIII GGCC 4 cut(s) 673, 772, 1148, 1307
HapII CCGG 2 cut(s) 1076, 1529
HgaI GACGC 1 cut(s) 1472
Hin1II CATG 6 cut(s) 127, 311, 482, 843, 1274, 1361
HincII GTYRAC 1 cut(s) 8
HindII GTYRAC 1 cut(s) 8
HindIII AAGCTT 1 cut(s) 1055
HinfI GANTC 4 cut(s) 116, 548, 1192, 1525
HpaII CCGG 2 cut(s) 1076, 1529
HphI GGTGA 3 cut(s) 499, 743, 1126
Hpy166II GTNNAC 5 cut(s) 8, 221, 266, 715, 981
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 5 cut(s) 29, 444, 611, 695, 1394
Hpy8I GTNNAC 5 cut(s) 8, 221, 266, 715, 981
Hpy99I CGWCG 1 cut(s) 1481
HpyCH4III ACNGT 4 cut(s) 214, 521, 1289, 1431
HpyCH4IV ACGT 4 cut(s) 217, 243, 365, 637
HpyF10VI GCNNNNNNNGC 1 cut(s) 1321
HpyF3I CTNAG 4 cut(s) 902, 1043, 1348, 1523
HpySE526I ACGT 4 cut(s) 217, 243, 365, 637
Hsp92II CATG 6 cut(s) 127, 311, 482, 843, 1274, 1361
Ksp22I TGATCA 3 cut(s) 51, 271, 334
Kzo9I GATC 9 cut(s) 51, 76, 271, 334, 607, 623, 656, 860, 1207
LmnI GCTCC 1 cut(s) 1244
LweI GCATC 3 cut(s) 858, 1156, 1506
MaeI CTAG 5 cut(s) 38, 500, 675, 1104, 1245
MaeII ACGT 4 cut(s) 217, 243, 365, 637
MaeIII GTNAC 7 cut(s) 161, 188, 313, 731, 1174, 1299, 1501
MalI GATC 9 cut(s) 53, 78, 273, 336, 609, 625, 658, 862, 1209
MboI GATC 9 cut(s) 51, 76, 271, 334, 607, 623, 656, 860, 1207
MboII GAAGA 7 cut(s) 604, 1129, 1148, 1307, 1376, 1381, 1424
MflI RGATCY 2 cut(s) 656, 860
MhlI GDGCHC 1 cut(s) 1342
MluCI AATT 9 cut(s) 11, 194, 325, 448, 690, 765, 962, 1028, 1332
MlyI GAGTC 1 cut(s) 1534
MmeI TCCRAC 1 cut(s) 920
MnlI CCTC 6 cut(s) 457, 597, 741, 979, 1011, 1311
MslI CAYNNNNRTG 4 cut(s) 128, 522, 720, 888
MspA1I CMGCKG 1 cut(s) 554
MspCI CTTAAG 2 cut(s) 1229, 1441
MspI CCGG 2 cut(s) 1076, 1529
MspR9I CCNGG 3 cut(s) 1076, 1513, 1530
MvaI CCWGG 1 cut(s) 1513
MwoI GCNNNNNNNGC 1 cut(s) 1321
NciI CCSGG 2 cut(s) 1076, 1530
NdeII GATC 9 cut(s) 51, 76, 271, 334, 607, 623, 656, 860, 1207
NlaIII CATG 6 cut(s) 127, 311, 482, 843, 1274, 1361
NmuCI GTSAC 1 cut(s) 731
NspI RCATGY 2 cut(s) 127, 1361
NspV TTCGAA 1 cut(s) 208
OliI CACNNNNGTG 2 cut(s) 522, 888
PciI ACATGT 2 cut(s) 123, 1357
PcsI WCGNNNNNNNCGW 1 cut(s) 214
PfeI GAWTC 3 cut(s) 116, 548, 1192
PflMI CCANNNNNTGG 1 cut(s) 978
PfoI TCCNGGA 1 cut(s) 1074
PleI GAGTC 1 cut(s) 1533
PmaCI CACGTG 1 cut(s) 638
PmlI CACGTG 1 cut(s) 638
PpsI GAGTC 1 cut(s) 1533
Ppu21I YACGTR 2 cut(s) 218, 638
PscI ACATGT 2 cut(s) 123, 1357
PshAI GACNNNNGTC 1 cut(s) 1482
Psp6I CCWGG 1 cut(s) 1511
PspCI CACGTG 1 cut(s) 638
PspEI GGTNACC 1 cut(s) 731
PspFI CCCAGC 1 cut(s) 1185
PspGI CCWGG 1 cut(s) 1511
PspPI GGNCC 5 cut(s) 671, 712, 771, 981, 1146
PsuI RGATCY 2 cut(s) 656, 860
PvuII CAGCTG 1 cut(s) 554
RsaI GTAC 5 cut(s) 112, 216, 358, 1041, 1101
RsaNI GTAC 5 cut(s) 111, 215, 357, 1040, 1100
RseI CAYNNNNRTG 4 cut(s) 128, 522, 720, 888
Sau3AI GATC 9 cut(s) 51, 76, 271, 334, 607, 623, 656, 860, 1207
Sau96I GGNCC 5 cut(s) 671, 712, 771, 981, 1146
SchI GAGTC 1 cut(s) 1534
ScrFI CCNGG 3 cut(s) 1076, 1513, 1530
SduI GDGCHC 1 cut(s) 1342
SfaNI GCATC 3 cut(s) 858, 1156, 1506
SfcI CTRYAG 1 cut(s) 520
SfuI TTCGAA 1 cut(s) 208
SinI GGWCC 2 cut(s) 712, 981
SmiMI CAYNNNNRTG 4 cut(s) 128, 522, 720, 888
SmlI CTYRAG 3 cut(s) 601, 1229, 1441
SmoI CTYRAG 3 cut(s) 601, 1229, 1441
SnaBI TACGTA 1 cut(s) 218
SpeI ACTAGT 1 cut(s) 1244
Sse9I AATT 9 cut(s) 11, 194, 325, 448, 690, 765, 962, 1028, 1332
SsiI CCGC 1 cut(s) 1463
SspI AATATT 1 cut(s) 407
SspMI CTAG 5 cut(s) 38, 500, 675, 1104, 1245
StyD4I CCNGG 3 cut(s) 1074, 1511, 1528
StyI CCWWGG 1 cut(s) 251
TaaI ACNGT 4 cut(s) 214, 521, 1289, 1431
TaiI ACGT 4 cut(s) 220, 246, 368, 640
TaqI TCGA 4 cut(s) 208, 462, 610, 1476
TaqII GACCGA 1 cut(s) 700
TasI AATT 9 cut(s) 11, 194, 325, 448, 690, 765, 962, 1028, 1332
TatI WGTACW 2 cut(s) 110, 356
TfiI GAWTC 3 cut(s) 116, 548, 1192
TscAI CASTG 1 cut(s) 524
TseFI GTSAC 1 cut(s) 731
Tsp45I GTSAC 1 cut(s) 731
TspDTI ATGAA 2 cut(s) 417, 551
TspGWI ACGGA 1 cut(s) 669
TspRI CASTG 1 cut(s) 524
Van91I CCANNNNNTGG 1 cut(s) 978
Vha464I CTTAAG 2 cut(s) 1229, 1441
VpaK11BI GGWCC 2 cut(s) 712, 981
XapI RAATTY 4 cut(s) 448, 690, 765, 962
XceI RCATGY 2 cut(s) 127, 1361
XspI CTAG 5 cut(s) 38, 500, 675, 1104, 1245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.