RLG00000023203

AT-rich interactive domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0018237
Physical Location & Seq
Forward (+)
19878038 .. 19879186
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023203

Sequence Viewer

Length: 1149 bp
ATGACATCTCTTGATAATCAAGGGAATAATGTGATCAAAGGTTCTTTGCCCAACGGAGATCAGCGAGAAAGAAAATCGTCATTTGGCTTCTGTACTGATTCTGACATGTTGGTGTGGTTGAAAGCACTTGCATTAGACCCTTGTAACCAAAATGCACCCATAGGTTCAAGTAACAAATTACCGAATGTTCGAGCAGTACGTAAACTTTTGCTTCGTTGTAATGACGTGTATCCTTTGAGTAAGCGTAAACTTGATCAGTTCTTAAGAGATAATAGATACATAGGCACTCATGGAGTAACTACAAATAATTTTGATGATCACACAGCCAAAAGAGTTTGTACAGATACGTTTTCCTCATCCTTAACCAATACAAACAAGAACAATGAATATTTCAAGCCAAAGCTTGTTTGTGCAAAGTTGGTCATCAAGGATAAATCAACTCATGGTTCGGTGATATTAAGACTAGGCAGGTCAAAGCGCTGTAGTGCAACCACAATGAATGTTAATGATTCAGCTGATTACTCAAAACTTGAAAGAGTATTAAGGTCAAAGAAGAGAAACTTGAAGGCTCGAGAGACATTGAGATCGCCATTTTCACATGGCAAGTATTTCCACGGATGTGTTCCTATTGGGCCTAGTTTTCAAGCTGAAATTCCTGAATGGACAGGTTCGGTCCACCTTTATGGTAATGGTGACCCAAAAGTTTTGAGGTGGTTGGGCATACGAATTTGGCCCATCAAAGGGAAAAAAACAAGTGTTGAGACCACTATAAAAACCATTGGACTAGGGAGACCTACATCATGTTCTTGCGTCTCTCCAAGATCTATTGGTTGTGTCAAACACCACGTTAGTGAAGCAAGACTTGGGTTGCAAGATGAGATTGGGTCTGCCTTTTGGAGTTGGAAGTTTGATGAGATGGGAGAATTTGCCTCCAAGTTGTGGACCTTGAAAGAACAGACAACCTTTAAATCTCTTGTAAAGAGAAATCAATTATCAAAGGTACTAAGTTCTTTGAAGCTTGCTTTTAAGTATTTCCCGGGTAAGTGTCACAGGAGTATTGTGAGTTATTACTATAATGTGTTCATCCTTAGGCGTATAAGTCTTCAAACTAGAGCTTCTTGTTGTGAAATTGACAGCGATGATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ELM2

Protein Analysis

383

Amino Acids

43.19

Weight (kDa)

9.74

Isoelectric Point (pI)

36.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018237)

Species Orthologous Gene IDs
rosa_laevigata RLG00000023193 RLG00000023203
rosa_multiflora Rmu_sc0006653.1_g000007
rosa_roxburghii Rroxscaffold_6G00397400 Rroxscaffold_6G00397420
rosa_rugosa Rorug03G0210700
rosa_samantha Rh2AG350100 Rh3BG299300 Rh3BG299700 Rh3DG292900
rosa_wichuraiana Rw3G023570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 459
AccB7I CCANNNNNTGG 1 cut(s) 939
AcsI RAATTY 3 cut(s) 651, 726, 923
AfaI GTAC 4 cut(s) 94, 198, 340, 1002
AfeI AGCGCT 1 cut(s) 479
AfiI CCNNNNNNNGG 3 cut(s) 740, 741, 939
AflII CTTAAG 1 cut(s) 262
AflIII ACRYGT 2 cut(s) 105, 225
AgsI TTSAA 9 cut(s) 121, 168, 394, 533, 565, 644, 949, 1015, 1106
AjiI CACGTC 1 cut(s) 226
AjuI GAANNNNNNNTTGG 2 cut(s) 846, 878
AleI CACNNNNGTG 2 cut(s) 618, 849
AluBI AGCT 5 cut(s) 403, 515, 647, 1018, 1115
AluI AGCT 5 cut(s) 403, 515, 647, 1018, 1115
Alw26I GTCTC 4 cut(s) 569, 755, 784, 817
Ama87I CYCGRG 2 cut(s) 570, 1036
Aor51HI AGCGCT 1 cut(s) 479
AoxI GGCC 2 cut(s) 632, 731
ApoI RAATTY 3 cut(s) 651, 726, 923
AspLEI GCGC 1 cut(s) 480
AspS9I GGNCC 4 cut(s) 632, 673, 732, 942
AsuC2I CCSGG 2 cut(s) 1037, 1038
AsuHPI GGTGA 2 cut(s) 463, 704
AvaI CYCGRG 2 cut(s) 570, 1036
AvaII GGWCC 2 cut(s) 673, 942
AxyI CCTNAGG 1 cut(s) 1088
BbsI GAAGAC 1 cut(s) 1094
BccI CCATC 2 cut(s) 743, 910
BciVI GTATCC 1 cut(s) 240
BclI TGATCA 3 cut(s) 33, 253, 316
BcnI CCSGG 2 cut(s) 1037, 1038
BcoDI GTCTC 4 cut(s) 569, 755, 784, 817
BfaI CTAG 4 cut(s) 464, 636, 785, 1110
BfmI CTRYAG 1 cut(s) 481
BfoI RGCGCY 1 cut(s) 481
BfrI CTTAAG 1 cut(s) 262
BfuAI ACCTGC 1 cut(s) 459
BfuI GTATCC 1 cut(s) 240
BglII AGATCT 1 cut(s) 821
Bme1390I CCNGG 2 cut(s) 1037, 1038
Bme18I GGWCC 2 cut(s) 673, 942
BmeT110I CYCGRG 2 cut(s) 570, 1036
BmgBI CACGTC 1 cut(s) 226
BmgT120I GGNCC 4 cut(s) 632, 673, 732, 942
BmrFI CCNGG 2 cut(s) 1037, 1038
BpiI GAAGAC 1 cut(s) 1094
BpuMI CCSGG 2 cut(s) 1037, 1038
BsaAI YACGTR 1 cut(s) 200
BsaI GGTCTC 2 cut(s) 755, 784
BsaJI CCNNGG 2 cut(s) 613, 1036
Bsc4I CCNNNNNNNGG 3 cut(s) 740, 741, 939
Bse21I CCTNAGG 1 cut(s) 1088
BseDI CCNNGG 2 cut(s) 613, 1036
BseGI GGATG 3 cut(s) 356, 623, 1083
BseLI CCNNNNNNNGG 3 cut(s) 740, 741, 939
BshFI GGCC 2 cut(s) 634, 733
BsiHKCI CYCGRG 2 cut(s) 570, 1036
BsiSI CCGG 1 cut(s) 1037
BslI CCNNNNNNNGG 3 cut(s) 740, 741, 939
BsmAI GTCTC 4 cut(s) 569, 755, 784, 817
BsmBI CGTCTC 1 cut(s) 817
BsnI GGCC 2 cut(s) 634, 733
Bso31I GGTCTC 2 cut(s) 755, 784
BsoBI CYCGRG 2 cut(s) 570, 1036
Bsp1407I TGTACA 1 cut(s) 338
Bsp143I GATC 6 cut(s) 33, 58, 253, 316, 584, 821
BspANI GGCC 2 cut(s) 634, 733
BspMI ACCTGC 1 cut(s) 459
BspTI CTTAAG 1 cut(s) 262
BspTNI GGTCTC 2 cut(s) 755, 784
BsrGI TGTACA 1 cut(s) 338
BssECI CCNNGG 2 cut(s) 613, 1036
BssMI GATC 6 cut(s) 33, 58, 253, 316, 584, 821
Bst6I CTCTTC 1 cut(s) 548
BstAFI CTTAAG 1 cut(s) 262
BstAUI TGTACA 1 cut(s) 338
BstBAI YACGTR 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 1020
BstDEI CTNAG 2 cut(s) 1004, 1088
BstDSI CCRYGG 1 cut(s) 613
BstEII GGTNACC 1 cut(s) 692
BstF5I GGATG 3 cut(s) 356, 623, 1083
BstH2I RGCGCY 1 cut(s) 481
BstHHI GCGC 1 cut(s) 480
BstKTI GATC 6 cut(s) 36, 61, 256, 319, 587, 824
BstMAI GTCTC 4 cut(s) 569, 755, 784, 817
BstMBI GATC 6 cut(s) 33, 58, 253, 316, 584, 821
BstNSI RCATGY 1 cut(s) 109
BstPI GGTNACC 1 cut(s) 692
BstSCI CCNGG 2 cut(s) 1035, 1036
BstSFI CTRYAG 1 cut(s) 481
BstSNI TACGTA 1 cut(s) 200
BstV2I GAAGAC 1 cut(s) 1094
BstX2I RGATCY 1 cut(s) 821
BstXI CCANNNNNNTGG 1 cut(s) 683
BstYI RGATCY 1 cut(s) 821
Bsu36I CCTNAGG 1 cut(s) 1088
BsuI GTATCC 1 cut(s) 240
BsuRI GGCC 2 cut(s) 634, 733
BtgI CCRYGG 1 cut(s) 613
BtrI CACGTC 1 cut(s) 226
BtsCI GGATG 3 cut(s) 356, 623, 1083
BveI ACCTGC 1 cut(s) 459
Cac8I GCNNGC 1 cut(s) 1020
CfoI GCGC 1 cut(s) 480
Cfr13I GGNCC 4 cut(s) 632, 673, 732, 942
Cfr9I CCCGGG 1 cut(s) 1036
CseI GACGC 1 cut(s) 799
Csp6I GTAC 4 cut(s) 93, 197, 339, 1001
CviAII CATG 5 cut(s) 106, 290, 443, 599, 801
CviQI GTAC 4 cut(s) 93, 197, 339, 1001
DdeI CTNAG 2 cut(s) 1004, 1088
DpnI GATC 6 cut(s) 35, 60, 255, 318, 586, 823
DpnII GATC 6 cut(s) 33, 58, 253, 316, 584, 821
DraI TTTAAA 1 cut(s) 967
Eam1104I CTCTTC 1 cut(s) 548
EarI CTCTTC 1 cut(s) 548
Eco105I TACGTA 1 cut(s) 200
Eco31I GGTCTC 2 cut(s) 755, 784
Eco47I GGWCC 2 cut(s) 673, 942
Eco47III AGCGCT 1 cut(s) 479
Eco81I CCTNAGG 1 cut(s) 1088
Eco88I CYCGRG 2 cut(s) 570, 1036
Eco91I GGTNACC 1 cut(s) 692
EcoO65I GGTNACC 1 cut(s) 692
Esp3I CGTCTC 1 cut(s) 817
FaeI CATG 5 cut(s) 109, 293, 446, 602, 804
FalI AAGNNNNNCTT 4 cut(s) 545, 577, 846, 878
FatI CATG 5 cut(s) 105, 289, 442, 598, 800
FbaI TGATCA 3 cut(s) 33, 253, 316
FokI GGATG 3 cut(s) 343, 630, 1070
FspBI CTAG 4 cut(s) 464, 636, 785, 1110
GlaI GCGC 1 cut(s) 479
HaeII RGCGCY 1 cut(s) 481
HaeIII GGCC 2 cut(s) 634, 733
HapII CCGG 1 cut(s) 1037
HgaI GACGC 1 cut(s) 799
HhaI GCGC 1 cut(s) 480
Hin1II CATG 5 cut(s) 109, 293, 446, 602, 804
Hin6I GCGC 1 cut(s) 478
HinP1I GCGC 1 cut(s) 478
HindIII AAGCTT 2 cut(s) 401, 1016
HinfI GANTC 2 cut(s) 98, 509
HpaII CCGG 1 cut(s) 1037
HphI GGTGA 2 cut(s) 463, 704
Hpy166II GTNNAC 4 cut(s) 203, 248, 676, 942
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 3 cut(s) 11, 572, 656
Hpy8I GTNNAC 4 cut(s) 203, 248, 676, 942
HpyAV CCTTC 1 cut(s) 559
HpyCH4IV ACGT 4 cut(s) 199, 225, 347, 846
HpyCH4V TGCA 5 cut(s) 131, 155, 413, 488, 871
HpyF3I CTNAG 2 cut(s) 1004, 1088
HpySE526I ACGT 4 cut(s) 199, 225, 347, 846
Hsp92II CATG 5 cut(s) 109, 293, 446, 602, 804
HspAI GCGC 1 cut(s) 478
Ksp22I TGATCA 3 cut(s) 33, 253, 316
Kzo9I GATC 6 cut(s) 33, 58, 253, 316, 584, 821
LpnPI CCDG 5 cut(s) 454, 651, 669, 1036, 1050
MaeI CTAG 4 cut(s) 464, 636, 785, 1110
MaeII ACGT 4 cut(s) 199, 225, 347, 846
MaeIII GTNAC 5 cut(s) 143, 170, 295, 692, 1046
MalI GATC 6 cut(s) 35, 60, 255, 318, 586, 823
MboI GATC 6 cut(s) 33, 58, 253, 316, 584, 821
MboII GAAGA 2 cut(s) 565, 1094
MflI RGATCY 1 cut(s) 821
MluCI AATT 7 cut(s) 176, 307, 651, 726, 923, 989, 1128
MmeI TCCRAC 1 cut(s) 881
MnlI CCTC 3 cut(s) 364, 702, 940
MseI TTAA 7 cut(s) 263, 362, 458, 504, 542, 966, 1026
MslI CAYNNNNRTG 4 cut(s) 110, 618, 681, 849
MspA1I CMGCKG 1 cut(s) 515
MspCI CTTAAG 1 cut(s) 262
MspI CCGG 1 cut(s) 1037
MspR9I CCNGG 2 cut(s) 1037, 1038
NciI CCSGG 2 cut(s) 1037, 1038
NdeII GATC 6 cut(s) 33, 58, 253, 316, 584, 821
NlaIII CATG 5 cut(s) 109, 293, 446, 602, 804
NmuCI GTSAC 2 cut(s) 692, 1046
NspI RCATGY 1 cut(s) 109
OliI CACNNNNGTG 2 cut(s) 618, 849
PaeR7I CTCGAG 1 cut(s) 570
PciI ACATGT 1 cut(s) 105
PcsI WCGNNNNNNNCGW 1 cut(s) 196
PfeI GAWTC 2 cut(s) 98, 509
PflMI CCANNNNNTGG 1 cut(s) 939
Ppu21I YACGTR 1 cut(s) 200
PscI ACATGT 1 cut(s) 105
PspEI GGTNACC 1 cut(s) 692
PspPI GGNCC 4 cut(s) 632, 673, 732, 942
PsuI RGATCY 1 cut(s) 821
PvuII CAGCTG 1 cut(s) 515
RsaI GTAC 4 cut(s) 94, 198, 340, 1002
RsaNI GTAC 4 cut(s) 93, 197, 339, 1001
RseI CAYNNNNRTG 4 cut(s) 110, 618, 681, 849
SaqAI TTAA 7 cut(s) 263, 362, 458, 504, 542, 966, 1026
Sau3AI GATC 6 cut(s) 33, 58, 253, 316, 584, 821
Sau96I GGNCC 4 cut(s) 632, 673, 732, 942
ScrFI CCNGG 2 cut(s) 1037, 1038
SfcI CTRYAG 1 cut(s) 481
Sfr274I CTCGAG 1 cut(s) 570
SinI GGWCC 2 cut(s) 673, 942
SlaI CTCGAG 1 cut(s) 570
SmaI CCCGGG 1 cut(s) 1038
SmiMI CAYNNNNRTG 4 cut(s) 110, 618, 681, 849
SmlI CTYRAG 2 cut(s) 262, 570
SmoI CTYRAG 2 cut(s) 262, 570
SnaBI TACGTA 1 cut(s) 200
Sse9I AATT 7 cut(s) 176, 307, 651, 726, 923, 989, 1128
SspI AATATT 1 cut(s) 389
SspMI CTAG 4 cut(s) 464, 636, 785, 1110
StyD4I CCNGG 2 cut(s) 1035, 1036
TaiI ACGT 4 cut(s) 202, 228, 350, 849
TaqI TCGA 2 cut(s) 190, 571
TaqII GACCGA 1 cut(s) 661
TasI AATT 7 cut(s) 176, 307, 651, 726, 923, 989, 1128
TatI WGTACW 2 cut(s) 92, 338
TfiI GAWTC 2 cut(s) 98, 509
Tru1I TTAA 7 cut(s) 263, 362, 458, 504, 542, 966, 1026
Tru9I TTAA 7 cut(s) 263, 362, 458, 504, 542, 966, 1026
TseFI GTSAC 2 cut(s) 692, 1046
Tsp45I GTSAC 2 cut(s) 692, 1046
TspDTI ATGAA 3 cut(s) 399, 512, 1072
TspGWI ACGGA 2 cut(s) 69, 630
TspMI CCCGGG 1 cut(s) 1036
Van91I CCANNNNNTGG 1 cut(s) 939
Vha464I CTTAAG 1 cut(s) 262
VpaK11BI GGWCC 2 cut(s) 673, 942
XapI RAATTY 3 cut(s) 651, 726, 923
XceI RCATGY 1 cut(s) 109
XhoI CTCGAG 1 cut(s) 570
XmaI CCCGGG 1 cut(s) 1036
XspI CTAG 4 cut(s) 464, 636, 785, 1110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.