RLG00000026445

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0018238
Physical Location & Seq
Forward (+)
3098368 .. 3099617
1250 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026445

Sequence Viewer

Length: 1164 bp
ATGGATCAGATCGAAGTGAGTGAATCGGAAAGGGAGACTATGAATAGGAATAGAAGTTGGAGCCCGAATCCGAGTCCGAATCGCGAACCGAAATTGTATGTATGTTGCCAGGAAGAAAACTTCTTCAGGGGCTGCTACGTCATCCGCGCCATCGATTTGGAGTGTTTGATGGCTTGCTCCTGTGGCTTTGATGAAGACAAAGGTGTGGAAATCAAGTCGCAGCATCCTGCCCCAATCATGATTTGCGGCCAGCCGGTTGCCTTCGTAGGCGGCGAGTTATCACCGTGGTCGTATGATTGCAAACCCAGCCGAAAGGTTTTCCTCTATGACATTGAGGATGAGGATGGGGATGAGCTCCGGCTTCAGGGCTTAGAAAACGGCAACAACATCAAGAAGTTGGACAAAAGCTGCAACGGTCTTGCAAATATCCATCATGACATATTTTATCTGCGGATGATGGAGATAGGAGGAGATCTCTATGCTCTCGGAGTTGTCAAATGTGACGTCAGTGTCTCTCAGCGGTGGGAAGCTCTGCCTCCACCCATACCGAGTTTCAGTCATTATTTCACTCGTCGTACTCTATTTTCTCTACTTTCCACGGACAACAAGATCTTTCTGTCCACCTATTTCCCACATTTGCCGGTCAAATGTTTCGACACCGACCGTAAGTGCTGGATGGCTGATTCCGGCTTCGACAGTGAGGTTTTTCCCTTTGTGGGTGAGGCTTTAGTCGTGGACTTGGATAAACCAAGCAAGGAGAAGTTGGTGTTTGCCTATGGTCGTGATACTATATACGTGTGGCGATTGGGATTGACTGATGATCTGAAAGGTTCTTGTCTTACCAGATACGGGTCTGTGAATGTGAAACCTAGGTTGCTTGGCTTATTGGGACATTTGTTTGAAGTATCTAAGCAGCATCGTCTCATCGATCTAGGAGATGGAAAAATCTGCTTGGTTAGAGCCAGGAGGTACCCAGTTGTTGAAGGTACTATAAATTCAGTAGGGCTTGAGAAGGTGTGTGTTGTTATCATAGTATTCAAATATGAGTTTGATCCGAGAGCACAAGCCTTGCCCTACAAGTTCCTGTCTACCCGCACCTTTACCTTCATGCCCCATTGCAACGAATCCTGCTTTGTCCGCCTGCTTAAATGCTTTGTGCGCTAG

Protein Analysis

388

Amino Acids

44.25

Weight (kDa)

6.28

Isoelectric Point (pI)

51.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018238)

Species Orthologous Gene IDs
rosa_laevigata RLG00000026445 RLG00000026447 RLG00000026453
rosa_multiflora Rmu_sc0006315.1_g000005 Rmu_sc0013545.1_g000003
rosa_roxburghii Rroxscaffold_4G00280560
rosa_rugosa Rorug01G0407600 Rorug01G0407600 Rorug01G0407700
rosa_samantha Rh1AG421800
rosa_wichuraiana Rw1G037550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 509
AatII GACGTC 1 cut(s) 507
Acc65I GGTACC 1 cut(s) 969
AccB1I GGYRCC 1 cut(s) 969
AccI GTMKAC 1 cut(s) 1088
AccII CGCG 2 cut(s) 84, 147
AciI CCGC 7 cut(s) 145, 246, 270, 451, 520, 1093, 1138
AclWI GGATC 2 cut(s) 12, 1046
AcoI YGGCCR 1 cut(s) 247
AcsI RAATTY 1 cut(s) 994
AcuI CTGAAG 2 cut(s) 109, 347
AcyI GRCGYC 1 cut(s) 504
AfaI GTAC 3 cut(s) 577, 971, 988
AfiI CCNNNNNNNGG 3 cut(s) 364, 716, 849
AflIII ACRYGT 1 cut(s) 795
AgsI TTSAA 3 cut(s) 902, 983, 1039
AjnI CCWGG 2 cut(s) 108, 962
AluBI AGCT 3 cut(s) 355, 408, 530
AluI AGCT 3 cut(s) 355, 408, 530
Alw21I GWGCWC 2 cut(s) 357, 1063
Alw26I GTCTC 3 cut(s) 29, 517, 926
AlwI GGATC 2 cut(s) 12, 1046
AlwNI CAGNNNCTG 1 cut(s) 132
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 4 cut(s) 132, 220, 408, 913
ApoI RAATTY 1 cut(s) 994
ArsI GACNNNNNNTTYG 2 cut(s) 489, 521
Asp718I GGTACC 1 cut(s) 969
AspA2I CCTAGG 1 cut(s) 869
AspLEI GCGC 2 cut(s) 149, 1161
AsuHPI GGTGA 2 cut(s) 273, 731
AvrII CCTAGG 1 cut(s) 869
BanI GGYRCC 1 cut(s) 969
BanII GRGCYC 2 cut(s) 65, 357
BbsI GAAGAC 1 cut(s) 201
Bbv12I GWGCWC 2 cut(s) 357, 1063
BbvI GCAGC 4 cut(s) 119, 232, 395, 925
BccI CCATC 7 cut(s) 158, 163, 338, 438, 451, 670, 932
BceAI ACGGC 1 cut(s) 394
BciT130I CCWGG 2 cut(s) 110, 964
BcoDI GTCTC 3 cut(s) 29, 517, 926
BfaI CTAG 3 cut(s) 870, 932, 1162
BglII AGATCT 2 cut(s) 472, 609
BisI GCNGC 6 cut(s) 133, 221, 247, 271, 409, 914
BlnI CCTAGG 1 cut(s) 869
BlsI GCNGC 6 cut(s) 134, 222, 248, 272, 410, 915
Bme1390I CCNGG 2 cut(s) 110, 964
BmiI GGNNCC 2 cut(s) 62, 971
BmrFI CCNGG 2 cut(s) 110, 964
BmrI ACTGGG 1 cut(s) 968
BmsI GCATC 2 cut(s) 232, 925
BmuI ACTGGG 1 cut(s) 968
BpiI GAAGAC 1 cut(s) 201
BplI GAGNNNNNCTC 2 cut(s) 459, 491
BpuEI CTTGAG 1 cut(s) 1028
Bsa29I ATCGAT 2 cut(s) 153, 927
BsaAI YACGTR 1 cut(s) 796
BsaHI GRCGYC 1 cut(s) 504
BsaJI CCNNGG 3 cut(s) 284, 597, 869
Bsc4I CCNNNNNNNGG 3 cut(s) 364, 716, 849
Bse118I RCCGGY 2 cut(s) 253, 640
Bse1I ACTGG 1 cut(s) 974
Bse3DI GCAATG 1 cut(s) 1114
BseBI CCWGG 2 cut(s) 110, 964
BseCI ATCGAT 2 cut(s) 153, 927
BseDI CCNNGG 3 cut(s) 284, 597, 869
BseGI GGATG 7 cut(s) 141, 223, 343, 349, 355, 459, 681
BseLI CCNNNNNNNGG 3 cut(s) 364, 716, 849
BseMI GCAATG 1 cut(s) 1114
BseMII CTCAG 1 cut(s) 530
BseNI ACTGG 1 cut(s) 974
BseRI GAGGAG 1 cut(s) 483
BseXI GCAGC 4 cut(s) 119, 232, 395, 925
BseYI CCCAGC 1 cut(s) 305
Bsh1236I CGCG 2 cut(s) 84, 147
Bsh1285I CGRYCG 1 cut(s) 664
BshFI GGCC 1 cut(s) 249
BshNI GGYRCC 1 cut(s) 969
BshVI ATCGAT 2 cut(s) 153, 927
BsiEI CGRYCG 1 cut(s) 664
BsiHKAI GWGCWC 2 cut(s) 357, 1063
BsiSI CCGG 4 cut(s) 254, 358, 641, 687
BslFI GGGAC 1 cut(s) 903
BslI CCNNNNNNNGG 3 cut(s) 364, 716, 849
BsmAI GTCTC 3 cut(s) 29, 517, 926
BsmBI CGTCTC 1 cut(s) 926
BsmFI GGGAC 1 cut(s) 903
BsnI GGCC 1 cut(s) 249
Bsp1286I GDGCHC 3 cut(s) 65, 357, 1063
Bsp143I GATC 7 cut(s) 4, 9, 472, 609, 820, 928, 1051
Bsp68I TCGCGA 1 cut(s) 84
BspACI CCGC 7 cut(s) 145, 246, 270, 451, 520, 1093, 1138
BspANI GGCC 1 cut(s) 249
BspCNI CTCAG 1 cut(s) 529
BspDI ATCGAT 2 cut(s) 153, 927
BspFNI CGCG 2 cut(s) 84, 147
BspHI TCATGA 2 cut(s) 237, 433
BspLI GGNNCC 2 cut(s) 62, 971
BspPI GGATC 2 cut(s) 12, 1046
BspT107I GGYRCC 1 cut(s) 969
BsrDI GCAATG 1 cut(s) 1114
BsrFI RCCGGY 2 cut(s) 253, 640
BsrI ACTGG 1 cut(s) 974
BssAI RCCGGY 2 cut(s) 253, 640
BssECI CCNNGG 3 cut(s) 284, 597, 869
BssMI GATC 7 cut(s) 4, 9, 472, 609, 820, 928, 1051
BssNI GRCGYC 1 cut(s) 504
BssT1I CCWWGG 1 cut(s) 869
Bst2UI CCWGG 2 cut(s) 110, 964
Bst4CI ACNGT 4 cut(s) 285, 416, 665, 698
BstACI GRCGYC 1 cut(s) 504
BstBAI YACGTR 1 cut(s) 796
BstC8I GCNNGC 3 cut(s) 175, 251, 1142
BstDEI CTNAG 3 cut(s) 370, 516, 909
BstDSI CCRYGG 2 cut(s) 284, 597
BstF5I GGATG 7 cut(s) 141, 223, 343, 349, 355, 459, 681
BstFNI CGCG 2 cut(s) 84, 147
BstHHI GCGC 2 cut(s) 149, 1161
BstKTI GATC 7 cut(s) 7, 12, 475, 612, 823, 931, 1054
BstMAI GTCTC 3 cut(s) 29, 517, 926
BstMBI GATC 7 cut(s) 4, 9, 472, 609, 820, 928, 1051
BstMCI CGRYCG 1 cut(s) 664
BstMWI GCNNNNNNNGC 4 cut(s) 183, 306, 1137, 1158
BstNI CCWGG 2 cut(s) 110, 964
BstSCI CCNGG 2 cut(s) 108, 962
BstUI CGCG 2 cut(s) 84, 147
BstV1I GCAGC 4 cut(s) 119, 232, 395, 925
BstV2I GAAGAC 1 cut(s) 201
BstX2I RGATCY 2 cut(s) 472, 609
BstXI CCANNNNNNTGG 1 cut(s) 157
BstYI RGATCY 2 cut(s) 472, 609
Bsu15I ATCGAT 2 cut(s) 153, 927
BsuRI GGCC 1 cut(s) 249
BsuTUI ATCGAT 2 cut(s) 153, 927
BtgI CCRYGG 2 cut(s) 284, 597
BtsCI GGATG 7 cut(s) 141, 223, 343, 349, 355, 459, 681
BtsIMutI CAGTG 2 cut(s) 514, 703
BtuMI TCGCGA 1 cut(s) 84
Cac8I GCNNGC 3 cut(s) 175, 251, 1142
CaiI CAGNNNCTG 1 cut(s) 132
CciI TCATGA 2 cut(s) 237, 433
CfoI GCGC 2 cut(s) 149, 1161
Cfr10I RCCGGY 2 cut(s) 253, 640
ClaI ATCGAT 2 cut(s) 153, 927
Csp6I GTAC 3 cut(s) 576, 970, 987
CviAII CATG 3 cut(s) 238, 434, 1108
CviQI GTAC 3 cut(s) 576, 970, 987
DdeI CTNAG 3 cut(s) 370, 516, 909
DpnI GATC 7 cut(s) 6, 11, 474, 611, 822, 930, 1053
DpnII GATC 7 cut(s) 4, 9, 472, 609, 820, 928, 1051
DrdI GACNNNNNNGTC 1 cut(s) 509
DseDI GACNNNNNNGTC 1 cut(s) 509
EaeI YGGCCR 1 cut(s) 247
EciI GGCGGA 1 cut(s) 1127
Ecl136II GAGCTC 1 cut(s) 355
Eco130I CCWWGG 1 cut(s) 869
Eco24I GRGCYC 2 cut(s) 65, 357
Eco53kI GAGCTC 1 cut(s) 355
Eco57I CTGAAG 2 cut(s) 109, 347
EcoICRI GAGCTC 1 cut(s) 355
EcoRII CCWGG 2 cut(s) 108, 962
EcoT14I CCWWGG 1 cut(s) 869
EcoT38I GRGCYC 2 cut(s) 65, 357
ErhI CCWWGG 1 cut(s) 869
Esp3I CGTCTC 1 cut(s) 926
FaeI CATG 3 cut(s) 241, 437, 1111
FaqI GGGAC 1 cut(s) 903
FatI CATG 3 cut(s) 237, 433, 1107
FauI CCCGC 1 cut(s) 1100
FblI GTMKAC 1 cut(s) 1088
Fnu4HI GCNGC 6 cut(s) 133, 221, 247, 271, 409, 914
FokI GGATG 7 cut(s) 128, 210, 350, 356, 362, 466, 688
FriOI GRGCYC 2 cut(s) 65, 357
Fsp4HI GCNGC 6 cut(s) 133, 221, 247, 271, 409, 914
FspBI CTAG 3 cut(s) 870, 932, 1162
GlaI GCGC 2 cut(s) 148, 1160
GluI GCNGC 6 cut(s) 133, 221, 247, 271, 409, 914
GsaI CCCAGC 1 cut(s) 309
HaeIII GGCC 1 cut(s) 249
HapII CCGG 4 cut(s) 254, 358, 641, 687
HhaI GCGC 2 cut(s) 149, 1161
Hin1I GRCGYC 1 cut(s) 504
Hin1II CATG 3 cut(s) 241, 437, 1111
Hin6I GCGC 2 cut(s) 147, 1159
HinP1I GCGC 2 cut(s) 147, 1159
HinfI GANTC 6 cut(s) 23, 67, 73, 79, 683, 1124
HpaII CCGG 4 cut(s) 254, 358, 641, 687
HphI GGTGA 2 cut(s) 273, 731
Hpy166II GTNNAC 3 cut(s) 621, 736, 1089
Hpy188I TCNGA 7 cut(s) 9, 28, 72, 78, 488, 825, 1056
Hpy188III TCNNGA 5 cut(s) 83, 238, 391, 434, 782
Hpy8I GTNNAC 3 cut(s) 621, 736, 1089
Hpy99I CGWCG 1 cut(s) 576
HpyAV CCTTC 4 cut(s) 271, 977, 1006, 1114
HpyCH4III ACNGT 4 cut(s) 285, 416, 665, 698
HpyCH4IV ACGT 3 cut(s) 138, 504, 795
HpyCH4V TGCA 4 cut(s) 300, 411, 422, 1119
HpyF10VI GCNNNNNNNGC 4 cut(s) 183, 306, 1137, 1158
HpyF3I CTNAG 3 cut(s) 370, 516, 909
HpySE526I ACGT 3 cut(s) 138, 504, 795
Hsp92I GRCGYC 1 cut(s) 504
Hsp92II CATG 3 cut(s) 241, 437, 1111
HspAI GCGC 2 cut(s) 147, 1159
KpnI GGTACC 1 cut(s) 973
Kzo9I GATC 7 cut(s) 4, 9, 472, 609, 820, 928, 1051
LmnI GCTCC 3 cut(s) 60, 182, 360
Lsp1109I GCAGC 4 cut(s) 119, 232, 395, 925
LweI GCATC 2 cut(s) 232, 925
MaeI CTAG 3 cut(s) 870, 932, 1162
MaeII ACGT 3 cut(s) 138, 504, 795
MaeIII GTNAC 1 cut(s) 500
MalI GATC 7 cut(s) 6, 11, 474, 611, 822, 930, 1053
MboI GATC 7 cut(s) 4, 9, 472, 609, 820, 928, 1051
MboII GAAGA 3 cut(s) 115, 125, 206
MflI RGATCY 2 cut(s) 472, 609
MhlI GDGCHC 3 cut(s) 65, 357, 1063
MluCI AATT 2 cut(s) 92, 994
MlyI GAGTC 1 cut(s) 82
MmeI TCCRAC 2 cut(s) 38, 378
MnlI CCTC 8 cut(s) 328, 332, 334, 461, 546, 694, 715, 960
MseI TTAA 1 cut(s) 1146
MspA1I CMGCKG 1 cut(s) 520
MspI CCGG 4 cut(s) 254, 358, 641, 687
MspR9I CCNGG 2 cut(s) 110, 964
MvaI CCWGG 2 cut(s) 110, 964
MvnI CGCG 2 cut(s) 84, 147
MwoI GCNNNNNNNGC 4 cut(s) 183, 306, 1137, 1158
NdeII GATC 7 cut(s) 4, 9, 472, 609, 820, 928, 1051
NlaIII CATG 3 cut(s) 241, 437, 1111
NlaIV GGNNCC 2 cut(s) 62, 971
NmuCI GTSAC 1 cut(s) 500
NruI TCGCGA 1 cut(s) 84
PagI TCATGA 2 cut(s) 237, 433
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PfeI GAWTC 5 cut(s) 23, 67, 79, 683, 1124
PkrI GCNGC 6 cut(s) 134, 222, 248, 272, 410, 915
PleI GAGTC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 81
Ppu21I YACGTR 1 cut(s) 796
Psp124BI GAGCTC 1 cut(s) 357
Psp6I CCWGG 2 cut(s) 108, 962
PspFI CCCAGC 1 cut(s) 305
PspGI CCWGG 2 cut(s) 108, 962
PspN4I GGNNCC 2 cut(s) 62, 971
PstNI CAGNNNCTG 1 cut(s) 132
PsuI RGATCY 2 cut(s) 472, 609
RruI TCGCGA 1 cut(s) 84
RsaI GTAC 3 cut(s) 577, 971, 988
RsaNI GTAC 3 cut(s) 576, 970, 987
SacI GAGCTC 1 cut(s) 357
SaqAI TTAA 1 cut(s) 1146
SatI GCNGC 6 cut(s) 133, 221, 247, 271, 409, 914
Sau3AI GATC 7 cut(s) 4, 9, 472, 609, 820, 928, 1051
SchI GAGTC 1 cut(s) 82
ScrFI CCNGG 2 cut(s) 110, 964
SduI GDGCHC 3 cut(s) 65, 357, 1063
SfaNI GCATC 2 cut(s) 232, 925
SmlI CTYRAG 1 cut(s) 1007
SmoI CTYRAG 1 cut(s) 1007
Sse9I AATT 2 cut(s) 92, 994
SsiI CCGC 7 cut(s) 145, 246, 270, 451, 520, 1093, 1138
SspMI CTAG 3 cut(s) 870, 932, 1162
SstI GAGCTC 1 cut(s) 357
StyD4I CCNGG 2 cut(s) 108, 962
StyI CCWWGG 1 cut(s) 869
TaaI ACNGT 4 cut(s) 285, 416, 665, 698
TaiI ACGT 3 cut(s) 141, 507, 798
TaqI TCGA 5 cut(s) 12, 153, 654, 693, 927
TasI AATT 2 cut(s) 92, 994
TauI GCSGC 2 cut(s) 249, 273
TfiI GAWTC 5 cut(s) 23, 67, 79, 683, 1124
Tru1I TTAA 1 cut(s) 1146
Tru9I TTAA 1 cut(s) 1146
TscAI CASTG 2 cut(s) 514, 703
TseFI GTSAC 1 cut(s) 500
TseI GCWGC 4 cut(s) 132, 220, 408, 913
Tsp45I GTSAC 1 cut(s) 500
TspDTI ATGAA 3 cut(s) 56, 207, 1096
TspGWI ACGGA 1 cut(s) 614
TspRI CASTG 2 cut(s) 514, 703
XapI RAATTY 1 cut(s) 994
XmaJI CCTAGG 1 cut(s) 869
XmiI GTMKAC 1 cut(s) 1088
XspI CTAG 3 cut(s) 870, 932, 1162
ZraI GACGTC 1 cut(s) 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.