Rw1G037550

RNA binding

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
65192291 .. 65195177
2887 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G037550.1

Sequence Viewer

Length: 1284 bp
ATGGATCATCAGATCAAAGTGAGTGAATCGGAAAGGGAGAACGTGAATCGGAATAGGAATCGCAAACGGAATCGCAGTTGGAGTCCGAGTTCGAATCCGAGGCCGAGTCCGAGTCAGAATCGCAACCGCAAATTGTATGTATGTTGCCAGGAAGAAAACTTCTTCAGGGGCTGCTACGTCATCCGCGCCATCGATTTGGAGTGTTTGATGGCTTGCTCCTGTGACTTTGATGAAGACAAAGGTGTGGAAAACAAGTGCGCTAGCTGCGAATCCTGCCCCAATCATGATTTGCGGCCAGTCGGTTTACTCTGCGGCGATTACTGCGATATCCCCGACGGCATGGGCTGCTGTCCGTTTGGCTCCCAGATTGTCTACGTAGGCGGCGAGTTATCACCGTGGTCGTATGATTGCAGACCCAGCCGAAAGGTTTTCGTCTATGACATTGAGGATGAGCTCCGGCTTCAGGGCTTGGAAAACGGCAACAACATCAAGGAGTTGGACAAAAGCTGCAACGGTCTTTCAAATACCCATCATGACATATTTTATCCGCGGATGATGGAGATAGGAGGAGATCTCTATGCTCTCGGAGTTGTCCAATCTGACGTCAGTGTCTCTCAGGTATACAGGCCCCAATCGCAGCGGTGGGAAGCTCTGCCTCCACCCATACCGAGTTTCAGTCATGATTTCACTAGTGAAACTCTATATTCTCTATTTTCCACGGACAACAAGATCTTTCTGTCCACCTATTTCCCACAGATGCCGGTCAAATGTTTCGACACCGACCGTAAATGCTGGATAGCTGATTCCGGCTTCCACAGTGAGGTTTTCCCCTTTGTGGGTGAGGCTTTAGTCGTGGACTTGGATAAACCTTTCAAGGAGAAGTTGGTGTTTACCTATGATCGTGATATTATAAACGTGTGGCGATTGGGATTGACTGATGATTTGAAAGGTTCTTATCTTACCAGCTACGGGTCTGTGAATATGAAACCCAGGTTGCTTGGCTTATTGGAAAATTTGTGTGAACTATCTAAGCAGCTTCGTCTCATCGATCTAGGAGATGGAAAAATCTGCTTTGTTAGGGCCAGGAGCTACCCGGTTGAGGAACGTACTGTAAATTCACTAGGGCTTGAGAAGGTGCGTGTTGTTATCATAGTATTCAAATATGAGTTTGATCCGAGAGCACAAGCCTTACCCTACAAGATCCTGTCTACCCGCGCCTTTACCATCGTGCCCCATTGCAAGGAATCCTGCTTTGTCCGCCTGCTTAAATGCTTTGTGCGCTAG

Protein Analysis

427

Amino Acids

48.99

Weight (kDa)

6.22

Isoelectric Point (pI)

49.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 43 - 365 2e-08 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018238)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 911
AasI GACNNNNNNGTC 1 cut(s) 608
AatII GACGTC 1 cut(s) 606
AccI GTMKAC 3 cut(s) 372, 621, 1208
AccII CGCG 3 cut(s) 186, 550, 1215
AclWI GGATC 3 cut(s) 12, 1166, 1195
AcoI YGGCCR 1 cut(s) 293
AcsI RAATTY 2 cut(s) 1012, 1114
AcuI CTGAAG 2 cut(s) 148, 446
AcyI GRCGYC 1 cut(s) 603
AfaI GTAC 1 cut(s) 1108
AfiI CCNNNNNNNGG 7 cut(s) 463, 820, 835, 836, 969, 1099, 1240
AflIII ACRYGT 1 cut(s) 915
AgsI TTSAA 4 cut(s) 522, 874, 946, 1159
AhlI ACTAGT 1 cut(s) 689
AjnI CCWGG 3 cut(s) 147, 989, 1082
AloI GAACNNNNNNTCC 2 cut(s) 73, 105
AluBI AGCT 8 cut(s) 264, 454, 507, 650, 800, 966, 1036, 1089
AluI AGCT 8 cut(s) 264, 454, 507, 650, 800, 966, 1036, 1089
Alw21I GWGCWC 2 cut(s) 456, 1183
Alw26I GTCTC 2 cut(s) 616, 1046
AlwI GGATC 3 cut(s) 12, 1166, 1195
AlwNI CAGNNNCTG 1 cut(s) 171
AoxI GGCC 4 cut(s) 101, 293, 626, 1080
ApeKI GCWGC 6 cut(s) 171, 264, 345, 507, 637, 1033
ApoI RAATTY 2 cut(s) 1012, 1114
ArsI GACNNNNNNTTYG 2 cut(s) 925, 957
AspLEI GCGC 4 cut(s) 188, 260, 1217, 1281
AspS9I GGNCC 2 cut(s) 627, 1080
AsuC2I CCSGG 1 cut(s) 1094
AsuHPI GGTGA 2 cut(s) 384, 851
AsuII TTCGAA 1 cut(s) 92
AsuNHI GCTAGC 1 cut(s) 260
BaeGI GKGCMC 1 cut(s) 1233
BanII GRGCYC 1 cut(s) 456
BbsI GAAGAC 1 cut(s) 240
Bbv12I GWGCWC 2 cut(s) 456, 1183
BbvI GCAGC 6 cut(s) 158, 251, 332, 494, 649, 1045
BccI CCATC 6 cut(s) 197, 202, 537, 550, 1052, 1232
BceAI ACGGC 2 cut(s) 352, 493
BciT130I CCWGG 3 cut(s) 149, 991, 1084
BcnI CCSGG 1 cut(s) 1094
BcoDI GTCTC 2 cut(s) 616, 1046
BcuI ACTAGT 1 cut(s) 689
BfaI CTAG 5 cut(s) 261, 690, 1052, 1121, 1282
BglII AGATCT 2 cut(s) 571, 729
BisI GCNGC 9 cut(s) 172, 265, 293, 313, 346, 382, 508, 638, 1034
BlsI GCNGC 9 cut(s) 173, 266, 294, 314, 347, 383, 509, 639, 1035
Bme1390I CCNGG 4 cut(s) 149, 991, 1084, 1094
BmgT120I GGNCC 2 cut(s) 627, 1080
BmiI GGNNCC 2 cut(s) 361, 629
BmrFI CCNGG 4 cut(s) 149, 991, 1084, 1094
BmsI GCATC 1 cut(s) 747
BmtI GCTAGC 1 cut(s) 264
BpiI GAAGAC 1 cut(s) 240
BplI GAGNNNNNCTC 2 cut(s) 558, 590
Bpu14I TTCGAA 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 1148
BpuMI CCSGG 1 cut(s) 1094
Bsa29I ATCGAT 2 cut(s) 192, 1047
BsaAI YACGTR 1 cut(s) 376
BsaHI GRCGYC 1 cut(s) 603
BsaJI CCNNGG 5 cut(s) 98, 395, 548, 717, 989
BsaXI ACNNNNNCTCC 2 cut(s) 73, 103
Bsc4I CCNNNNNNNGG 7 cut(s) 463, 820, 835, 836, 969, 1099, 1240
Bse118I RCCGGY 1 cut(s) 760
Bse1I ACTGG 1 cut(s) 296
Bse3DI GCAATG 1 cut(s) 1234
BseBI CCWGG 3 cut(s) 149, 991, 1084
BseCI ATCGAT 2 cut(s) 192, 1047
BseDI CCNNGG 5 cut(s) 98, 395, 548, 717, 989
BseGI GGATG 3 cut(s) 180, 454, 558
BseLI CCNNNNNNNGG 7 cut(s) 463, 820, 835, 836, 969, 1099, 1240
BseMI GCAATG 1 cut(s) 1234
BseMII CTCAG 1 cut(s) 629
BseNI ACTGG 1 cut(s) 296
BseRI GAGGAG 1 cut(s) 582
BseSI GKGCMC 1 cut(s) 1233
BseXI GCAGC 6 cut(s) 158, 251, 332, 494, 649, 1045
BseYI CCCAGC 1 cut(s) 416
Bsh1236I CGCG 3 cut(s) 186, 550, 1215
Bsh1285I CGRYCG 1 cut(s) 784
BshFI GGCC 4 cut(s) 103, 295, 628, 1082
BshVI ATCGAT 2 cut(s) 192, 1047
BsiEI CGRYCG 1 cut(s) 784
BsiHKAI GWGCWC 2 cut(s) 456, 1183
BsiSI CCGG 4 cut(s) 457, 761, 807, 1094
BslI CCNNNNNNNGG 7 cut(s) 463, 820, 835, 836, 969, 1099, 1240
BsmAI GTCTC 2 cut(s) 616, 1046
BsmBI CGTCTC 1 cut(s) 1046
BsnI GGCC 4 cut(s) 103, 295, 628, 1082
Bsp119I TTCGAA 1 cut(s) 92
Bsp1286I GDGCHC 3 cut(s) 456, 1183, 1233
Bsp143I GATC 8 cut(s) 4, 12, 571, 729, 898, 1048, 1171, 1200
BspANI GGCC 4 cut(s) 103, 295, 628, 1082
BspCNI CTCAG 1 cut(s) 628
BspDI ATCGAT 2 cut(s) 192, 1047
BspFNI CGCG 3 cut(s) 186, 550, 1215
BspHI TCATGA 3 cut(s) 283, 532, 679
BspLI GGNNCC 2 cut(s) 361, 629
BspOI GCTAGC 1 cut(s) 264
BspPI GGATC 3 cut(s) 12, 1166, 1195
BspT104I TTCGAA 1 cut(s) 92
BsrDI GCAATG 1 cut(s) 1234
BsrFI RCCGGY 1 cut(s) 760
BsrI ACTGG 1 cut(s) 296
BssAI RCCGGY 1 cut(s) 760
BssECI CCNNGG 5 cut(s) 98, 395, 548, 717, 989
BssMI GATC 8 cut(s) 4, 12, 571, 729, 898, 1048, 1171, 1200
BssNAI GTATAC 1 cut(s) 622
BssNI GRCGYC 1 cut(s) 603
Bst1107I GTATAC 1 cut(s) 622
Bst2UI CCWGG 3 cut(s) 149, 991, 1084
Bst4CI ACNGT 5 cut(s) 396, 515, 785, 818, 1111
BstACI GRCGYC 1 cut(s) 603
BstAPI GCANNNNNTGC 1 cut(s) 345
BstBAI YACGTR 1 cut(s) 376
BstBI TTCGAA 1 cut(s) 92
BstC8I GCNNGC 3 cut(s) 214, 262, 1262
BstDEI CTNAG 2 cut(s) 615, 1029
BstDSI CCRYGG 3 cut(s) 395, 548, 717
BstF5I GGATG 3 cut(s) 180, 454, 558
BstFNI CGCG 3 cut(s) 186, 550, 1215
BstHHI GCGC 4 cut(s) 188, 260, 1217, 1281
BstKTI GATC 8 cut(s) 7, 15, 574, 732, 901, 1051, 1174, 1203
BstMAI GTCTC 2 cut(s) 616, 1046
BstMBI GATC 8 cut(s) 4, 12, 571, 729, 898, 1048, 1171, 1200
BstMCI CGRYCG 1 cut(s) 784
BstMWI GCNNNNNNNGC 8 cut(s) 264, 273, 321, 345, 417, 634, 1257, 1278
BstNI CCWGG 3 cut(s) 149, 991, 1084
BstSCI CCNGG 4 cut(s) 147, 989, 1082, 1092
BstSLI GKGCMC 1 cut(s) 1233
BstSNI TACGTA 1 cut(s) 376
BstUI CGCG 3 cut(s) 186, 550, 1215
BstV1I GCAGC 6 cut(s) 158, 251, 332, 494, 649, 1045
BstV2I GAAGAC 1 cut(s) 240
BstX2I RGATCY 3 cut(s) 571, 729, 1200
BstXI CCANNNNNNTGG 1 cut(s) 196
BstYI RGATCY 3 cut(s) 571, 729, 1200
BstZ17I GTATAC 1 cut(s) 622
Bsu15I ATCGAT 2 cut(s) 192, 1047
BsuRI GGCC 4 cut(s) 103, 295, 628, 1082
BsuTUI ATCGAT 2 cut(s) 192, 1047
BtgI CCRYGG 3 cut(s) 395, 548, 717
BtsCI GGATG 3 cut(s) 180, 454, 558
BtsIMutI CAGTG 2 cut(s) 613, 823
Cac8I GCNNGC 3 cut(s) 214, 262, 1262
CaiI CAGNNNCTG 1 cut(s) 171
CciI TCATGA 3 cut(s) 283, 532, 679
CfoI GCGC 4 cut(s) 188, 260, 1217, 1281
Cfr10I RCCGGY 1 cut(s) 760
Cfr13I GGNCC 2 cut(s) 627, 1080
Cfr42I CCGCGG 1 cut(s) 551
ClaI ATCGAT 2 cut(s) 192, 1047
Csp6I GTAC 1 cut(s) 1107
CviAII CATG 4 cut(s) 284, 340, 533, 680
CviQI GTAC 1 cut(s) 1107
DdeI CTNAG 2 cut(s) 615, 1029
DpnI GATC 8 cut(s) 6, 14, 573, 731, 900, 1050, 1173, 1202
DpnII GATC 8 cut(s) 4, 12, 571, 729, 898, 1048, 1171, 1200
DrdI GACNNNNNNGTC 1 cut(s) 608
DseDI GACNNNNNNGTC 1 cut(s) 608
EaeI YGGCCR 1 cut(s) 293
EciI GGCGGA 1 cut(s) 1247
Ecl136II GAGCTC 1 cut(s) 454
Eco105I TACGTA 1 cut(s) 376
Eco24I GRGCYC 1 cut(s) 456
Eco32I GATATC 1 cut(s) 328
Eco53kI GAGCTC 1 cut(s) 454
Eco57I CTGAAG 2 cut(s) 148, 446
EcoICRI GAGCTC 1 cut(s) 454
EcoO109I RGGNCCY 1 cut(s) 627
EcoRII CCWGG 3 cut(s) 147, 989, 1082
EcoRV GATATC 1 cut(s) 328
EcoT38I GRGCYC 1 cut(s) 456
Esp3I CGTCTC 1 cut(s) 1046
FaeI CATG 4 cut(s) 287, 343, 536, 683
FatI CATG 4 cut(s) 283, 339, 532, 679
FauI CCCGC 1 cut(s) 1220
FblI GTMKAC 3 cut(s) 372, 621, 1208
Fnu4HI GCNGC 9 cut(s) 172, 265, 293, 313, 346, 382, 508, 638, 1034
FokI GGATG 3 cut(s) 167, 461, 565
FriOI GRGCYC 1 cut(s) 456
Fsp4HI GCNGC 9 cut(s) 172, 265, 293, 313, 346, 382, 508, 638, 1034
FspBI CTAG 5 cut(s) 261, 690, 1052, 1121, 1282
GlaI GCGC 4 cut(s) 187, 259, 1216, 1280
GluI GCNGC 9 cut(s) 172, 265, 293, 313, 346, 382, 508, 638, 1034
GsaI CCCAGC 1 cut(s) 420
HaeIII GGCC 4 cut(s) 103, 295, 628, 1082
HapII CCGG 4 cut(s) 457, 761, 807, 1094
HhaI GCGC 4 cut(s) 188, 260, 1217, 1281
Hin1I GRCGYC 1 cut(s) 603
Hin1II CATG 4 cut(s) 287, 343, 536, 683
Hin6I GCGC 4 cut(s) 186, 258, 1215, 1279
HinP1I GCGC 4 cut(s) 186, 258, 1215, 1279
HpaII CCGG 4 cut(s) 457, 761, 807, 1094
HphI GGTGA 2 cut(s) 384, 851
Hpy166II GTNNAC 8 cut(s) 305, 373, 622, 741, 856, 891, 1022, 1209
Hpy188III TCNNGA 4 cut(s) 284, 533, 680, 902
Hpy8I GTNNAC 8 cut(s) 305, 373, 622, 741, 856, 891, 1022, 1209
Hpy99I CGWCG 1 cut(s) 338
HpyAV CCTTC 1 cut(s) 1126
HpyCH4III ACNGT 5 cut(s) 396, 515, 785, 818, 1111
HpyCH4IV ACGT 6 cut(s) 42, 177, 375, 603, 915, 1105
HpyCH4V TGCA 3 cut(s) 411, 510, 1239
HpyF10VI GCNNNNNNNGC 8 cut(s) 264, 273, 321, 345, 417, 634, 1257, 1278
HpyF3I CTNAG 2 cut(s) 615, 1029
HpySE526I ACGT 6 cut(s) 42, 177, 375, 603, 915, 1105
Hsp92I GRCGYC 1 cut(s) 603
Hsp92II CATG 4 cut(s) 287, 343, 536, 683
HspAI GCGC 4 cut(s) 186, 258, 1215, 1279
KspI CCGCGG 1 cut(s) 551
Kzo9I GATC 8 cut(s) 4, 12, 571, 729, 898, 1048, 1171, 1200
LmnI GCTCC 4 cut(s) 221, 365, 459, 1086
Lsp1109I GCAGC 6 cut(s) 158, 251, 332, 494, 649, 1045
LweI GCATC 1 cut(s) 747
MaeI CTAG 5 cut(s) 261, 690, 1052, 1121, 1282
MaeII ACGT 6 cut(s) 42, 177, 375, 603, 915, 1105
MaeIII GTNAC 1 cut(s) 221
MalI GATC 8 cut(s) 6, 14, 573, 731, 900, 1050, 1173, 1202
MboI GATC 8 cut(s) 4, 12, 571, 729, 898, 1048, 1171, 1200
MboII GAAGA 3 cut(s) 154, 164, 245
MflI RGATCY 3 cut(s) 571, 729, 1200
MhlI GDGCHC 3 cut(s) 456, 1183, 1233
MluCI AATT 3 cut(s) 131, 1012, 1114
MlyI GAGTC 3 cut(s) 91, 115, 121
MmeI TCCRAC 2 cut(s) 59, 477
MnlI CCTC 7 cut(s) 93, 439, 560, 666, 814, 835, 1093
MseI TTAA 1 cut(s) 1266
MspA1I CMGCKG 2 cut(s) 550, 640
MspI CCGG 4 cut(s) 457, 761, 807, 1094
MspR9I CCNGG 4 cut(s) 149, 991, 1084, 1094
MvaI CCWGG 3 cut(s) 149, 991, 1084
MvnI CGCG 3 cut(s) 186, 550, 1215
MwoI GCNNNNNNNGC 8 cut(s) 264, 273, 321, 345, 417, 634, 1257, 1278
NciI CCSGG 1 cut(s) 1094
NdeII GATC 8 cut(s) 4, 12, 571, 729, 898, 1048, 1171, 1200
NheI GCTAGC 1 cut(s) 260
NlaIII CATG 4 cut(s) 287, 343, 536, 683
NlaIV GGNNCC 2 cut(s) 361, 629
NmeAIII GCCGAG 1 cut(s) 129
NmuCI GTSAC 1 cut(s) 221
NspV TTCGAA 1 cut(s) 92
PagI TCATGA 3 cut(s) 283, 532, 679
PcsI WCGNNNNNNNCGW 1 cut(s) 381
PfeI GAWTC 9 cut(s) 26, 46, 58, 70, 94, 118, 269, 803, 1244
PkrI GCNGC 9 cut(s) 173, 266, 294, 314, 347, 383, 509, 639, 1035
PleI GAGTC 3 cut(s) 90, 114, 120
PpsI GAGTC 3 cut(s) 90, 114, 120
Ppu21I YACGTR 1 cut(s) 376
PsiI TTATAA 1 cut(s) 911
Psp124BI GAGCTC 1 cut(s) 456
Psp6I CCWGG 3 cut(s) 147, 989, 1082
PspFI CCCAGC 1 cut(s) 416
PspGI CCWGG 3 cut(s) 147, 989, 1082
PspN4I GGNNCC 2 cut(s) 361, 629
PspPI GGNCC 2 cut(s) 627, 1080
PstNI CAGNNNCTG 1 cut(s) 171
PsuI RGATCY 3 cut(s) 571, 729, 1200
RsaI GTAC 1 cut(s) 1108
RsaNI GTAC 1 cut(s) 1107
SacI GAGCTC 1 cut(s) 456
SacII CCGCGG 1 cut(s) 551
SaqAI TTAA 1 cut(s) 1266
SatI GCNGC 9 cut(s) 172, 265, 293, 313, 346, 382, 508, 638, 1034
Sau3AI GATC 8 cut(s) 4, 12, 571, 729, 898, 1048, 1171, 1200
Sau96I GGNCC 2 cut(s) 627, 1080
SchI GAGTC 3 cut(s) 91, 115, 121
ScrFI CCNGG 4 cut(s) 149, 991, 1084, 1094
SduI GDGCHC 3 cut(s) 456, 1183, 1233
SfaNI GCATC 1 cut(s) 747
Sfr303I CCGCGG 1 cut(s) 551
SfuI TTCGAA 1 cut(s) 92
SgrBI CCGCGG 1 cut(s) 551
SmlI CTYRAG 1 cut(s) 1127
SmoI CTYRAG 1 cut(s) 1127
SnaBI TACGTA 1 cut(s) 376
SpeI ACTAGT 1 cut(s) 689
Sse9I AATT 3 cut(s) 131, 1012, 1114
SspMI CTAG 5 cut(s) 261, 690, 1052, 1121, 1282
SstI GAGCTC 1 cut(s) 456
StyD4I CCNGG 4 cut(s) 147, 989, 1082, 1092
TaaI ACNGT 5 cut(s) 396, 515, 785, 818, 1111
TaiI ACGT 6 cut(s) 45, 180, 378, 606, 918, 1108
TaqI TCGA 4 cut(s) 92, 192, 774, 1047
TasI AATT 3 cut(s) 131, 1012, 1114
TauI GCSGC 3 cut(s) 295, 315, 384
TfiI GAWTC 9 cut(s) 26, 46, 58, 70, 94, 118, 269, 803, 1244
Tru1I TTAA 1 cut(s) 1266
Tru9I TTAA 1 cut(s) 1266
TscAI CASTG 2 cut(s) 613, 823
TseFI GTSAC 1 cut(s) 221
TseI GCWGC 6 cut(s) 171, 264, 345, 507, 637, 1033
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 2 cut(s) 246, 998
TspGWI ACGGA 3 cut(s) 82, 342, 734
TspRI CASTG 2 cut(s) 613, 823
XapI RAATTY 2 cut(s) 1012, 1114
XmiI GTMKAC 3 cut(s) 372, 621, 1208
XspI CTAG 5 cut(s) 261, 690, 1052, 1121, 1282
ZraI GACGTC 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.