Rroxscaffold_4G00280560

RNA binding

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
3095324 .. 3098187
2864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00280560.1

Sequence Viewer

Length: 1284 bp
ATGGATCATCAGATCAAAGTGAGTGAATCGGAAAGGGAGAACGTGAATCGGAATAGGAATCGCAAACGGAATCGCAGTTGGAGTCCGAATCCGAGTCCGAGTCAGAATCGCAACCGCAAATTGTATGTATGTTGCCAGGAAGAAAACTTCTTCAGGGGCTGCTACGTCATCCGCGCCATCGATTTGGAGTGTTTGATGGCTTGCTCCTGTGACTTTGATGAAGACAAAGGTGTGGAAAACAAGTGCGCTAGCTGCGAATCCTGCCCCAATCATGATTTGCGGCCAGTCGGTTTACTCTGCGGCGATTACTGCGATATCCCCGACTGCATGGGCTGCTGTCCATTTGGTTCCCAGGTTGTCTTCGTAGGCGGCGAGTTATCACCGTGGTCGTATGATTGCAAACCCAGCCGAAAGGTTTTCGTATATGACATTGAGGATGAGGATGGGGATGAGCTCCGGCTTCAGGGCTTAGAAAACGGTAACAACATCAAGGAGTTGGACAAAAGCTGCAACGGTCTTGCAAATATCCATCATGACATATATTTTCCGCGGATGATGGAGATAGGAGGAGATCTCTATGCTCTCGGAGTTGTCAAATGTGACGTCAGTGTCTCTCAGGTATACAGGCCCCAATCGCAGCGGTGGGAAGCTCTGCCTCCACCCATACCGAGTTTCAGTCATGATTTCACTGGTGAAACTCTATATTCTCTATTTTCCACGGACAACAAGATCTTTCTGTCCACCTATTTCCCACATATGCCGGTCAAATGTTTCGACACCGACCGTAAATGCTGGATAGCTGATTCCGGCTTCCACAGTGTGGTTTTCCCCTTTGTGGGTGAGGCTTTAGTCGTGGACTTGGATAAACCTTCCAAGGAGAAGTTGGTGTTTACCTATGATCGTGATATTATAAACGTGTGGCGATTGGGATTGACTGATGATTTGAAAGGTTCTTATCTTACCAGCTACGGGTCTGTGGATATGAAACCCAGGTTGCTTGGCTTATTGGAAAATTTGCGTGAAGTATCTAAGCAGCTTCGTCTCATCGATCTAGGAGATGGAAAAATCTGCTTTGTTAGGGCCAGGAGCTACCCGGTTGAGGAACGTACTGTAAATTCACTAGGGCTTGAGAAGGTGCGTGTTGTTATCATAGTATTCAAATATGAGTTTGATCCGAGAGCACAAGCCTTACCCTACAAGATCCTGTCTACCCGCTCCTTTACCATCATGCCCCATTGCAAGGAATCCTGCTTTGTCCGCCTGCTTAAATGCTTTGTGGGCTAG

Protein Analysis

427

Amino Acids

48.86

Weight (kDa)

5.86

Isoelectric Point (pI)

50.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 39 - 365 2.2e-08 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018238)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 911
AasI GACNNNNNNGTC 1 cut(s) 608
AatII GACGTC 1 cut(s) 606
AccB7I CCANNNNNTGG 1 cut(s) 820
AccBSI CCGCTC 1 cut(s) 1215
AccI GTMKAC 2 cut(s) 621, 1208
AccII CGCG 2 cut(s) 174, 550
AclWI GGATC 3 cut(s) 12, 1166, 1195
AcoI YGGCCR 1 cut(s) 281
AcsI RAATTY 2 cut(s) 1012, 1114
AcuI CTGAAG 2 cut(s) 136, 446
AcyI GRCGYC 1 cut(s) 603
AdeI CACNNNGTG 1 cut(s) 820
AfaI GTAC 1 cut(s) 1108
AfiI CCNNNNNNNGG 7 cut(s) 463, 820, 835, 836, 969, 1099, 1240
AflIII ACRYGT 1 cut(s) 915
AgsI TTSAA 2 cut(s) 946, 1159
AjnI CCWGG 4 cut(s) 135, 351, 989, 1082
AluBI AGCT 8 cut(s) 252, 454, 507, 650, 800, 966, 1036, 1089
AluI AGCT 8 cut(s) 252, 454, 507, 650, 800, 966, 1036, 1089
Alw21I GWGCWC 2 cut(s) 456, 1183
Alw26I GTCTC 2 cut(s) 616, 1046
AlwI GGATC 3 cut(s) 12, 1166, 1195
AlwNI CAGNNNCTG 1 cut(s) 159
AoxI GGCC 3 cut(s) 281, 626, 1080
ApeKI GCWGC 6 cut(s) 159, 252, 333, 507, 637, 1033
ApoI RAATTY 2 cut(s) 1012, 1114
ArsI GACNNNNNNTTYG 4 cut(s) 588, 620, 925, 957
AspLEI GCGC 2 cut(s) 176, 248
AspS9I GGNCC 2 cut(s) 627, 1080
AsuC2I CCSGG 1 cut(s) 1094
AsuHPI GGTGA 3 cut(s) 372, 704, 851
AsuNHI GCTAGC 1 cut(s) 248
BanII GRGCYC 1 cut(s) 456
BbsI GAAGAC 2 cut(s) 228, 352
Bbv12I GWGCWC 2 cut(s) 456, 1183
BbvI GCAGC 6 cut(s) 146, 239, 320, 494, 649, 1045
BccI CCATC 7 cut(s) 185, 190, 437, 537, 550, 1052, 1232
BciT130I CCWGG 4 cut(s) 137, 353, 991, 1084
BcnI CCSGG 1 cut(s) 1094
BcoDI GTCTC 2 cut(s) 616, 1046
BfaI CTAG 4 cut(s) 249, 1052, 1121, 1282
BglII AGATCT 2 cut(s) 571, 729
BisI GCNGC 9 cut(s) 160, 253, 281, 301, 334, 370, 508, 638, 1034
BlsI GCNGC 9 cut(s) 161, 254, 282, 302, 335, 371, 509, 639, 1035
Bme1390I CCNGG 5 cut(s) 137, 353, 991, 1084, 1094
BmgT120I GGNCC 2 cut(s) 627, 1080
BmiI GGNNCC 2 cut(s) 349, 629
BmrFI CCNGG 5 cut(s) 137, 353, 991, 1084, 1094
BmtI GCTAGC 1 cut(s) 252
BpiI GAAGAC 2 cut(s) 228, 352
BplI GAGNNNNNCTC 2 cut(s) 558, 590
BpuEI CTTGAG 1 cut(s) 1148
BpuMI CCSGG 1 cut(s) 1094
Bsa29I ATCGAT 2 cut(s) 180, 1047
BsaHI GRCGYC 1 cut(s) 603
BsaJI CCNNGG 6 cut(s) 351, 383, 548, 717, 873, 989
Bsc4I CCNNNNNNNGG 7 cut(s) 463, 820, 835, 836, 969, 1099, 1240
Bse118I RCCGGY 1 cut(s) 760
Bse1I ACTGG 2 cut(s) 284, 694
Bse3DI GCAATG 1 cut(s) 1234
BseBI CCWGG 4 cut(s) 137, 353, 991, 1084
BseCI ATCGAT 2 cut(s) 180, 1047
BseDI CCNNGG 6 cut(s) 351, 383, 548, 717, 873, 989
BseGI GGATG 5 cut(s) 168, 442, 448, 454, 558
BseLI CCNNNNNNNGG 7 cut(s) 463, 820, 835, 836, 969, 1099, 1240
BseMI GCAATG 1 cut(s) 1234
BseMII CTCAG 1 cut(s) 629
BseNI ACTGG 2 cut(s) 284, 694
BseRI GAGGAG 1 cut(s) 582
BseXI GCAGC 6 cut(s) 146, 239, 320, 494, 649, 1045
BseYI CCCAGC 1 cut(s) 404
Bsh1236I CGCG 2 cut(s) 174, 550
Bsh1285I CGRYCG 1 cut(s) 784
BshFI GGCC 3 cut(s) 283, 628, 1082
BshVI ATCGAT 2 cut(s) 180, 1047
BsiEI CGRYCG 1 cut(s) 784
BsiHKAI GWGCWC 2 cut(s) 456, 1183
BsiSI CCGG 4 cut(s) 457, 761, 807, 1094
BslI CCNNNNNNNGG 7 cut(s) 463, 820, 835, 836, 969, 1099, 1240
BsmAI GTCTC 2 cut(s) 616, 1046
BsmBI CGTCTC 1 cut(s) 1046
BsnI GGCC 3 cut(s) 283, 628, 1082
Bsp1286I GDGCHC 2 cut(s) 456, 1183
Bsp143I GATC 8 cut(s) 4, 12, 571, 729, 898, 1048, 1171, 1200
BspANI GGCC 3 cut(s) 283, 628, 1082
BspCNI CTCAG 1 cut(s) 628
BspDI ATCGAT 2 cut(s) 180, 1047
BspFNI CGCG 2 cut(s) 174, 550
BspHI TCATGA 3 cut(s) 271, 532, 679
BspLI GGNNCC 2 cut(s) 349, 629
BspOI GCTAGC 1 cut(s) 252
BspPI GGATC 3 cut(s) 12, 1166, 1195
BsrBI CCGCTC 1 cut(s) 1215
BsrDI GCAATG 1 cut(s) 1234
BsrFI RCCGGY 1 cut(s) 760
BsrI ACTGG 2 cut(s) 284, 694
BssAI RCCGGY 1 cut(s) 760
BssECI CCNNGG 6 cut(s) 351, 383, 548, 717, 873, 989
BssMI GATC 8 cut(s) 4, 12, 571, 729, 898, 1048, 1171, 1200
BssNAI GTATAC 1 cut(s) 622
BssNI GRCGYC 1 cut(s) 603
BssT1I CCWWGG 1 cut(s) 873
Bst1107I GTATAC 1 cut(s) 622
Bst2UI CCWGG 4 cut(s) 137, 353, 991, 1084
Bst4CI ACNGT 6 cut(s) 384, 479, 515, 785, 818, 1111
BstACI GRCGYC 1 cut(s) 603
BstAPI GCANNNNNTGC 1 cut(s) 333
BstC8I GCNNGC 3 cut(s) 202, 250, 1262
BstDEI CTNAG 3 cut(s) 469, 615, 1029
BstDSI CCRYGG 3 cut(s) 383, 548, 717
BstF5I GGATG 5 cut(s) 168, 442, 448, 454, 558
BstFNI CGCG 2 cut(s) 174, 550
BstHHI GCGC 2 cut(s) 176, 248
BstKTI GATC 8 cut(s) 7, 15, 574, 732, 901, 1051, 1174, 1203
BstMAI GTCTC 2 cut(s) 616, 1046
BstMBI GATC 8 cut(s) 4, 12, 571, 729, 898, 1048, 1171, 1200
BstMCI CGRYCG 1 cut(s) 784
BstMWI GCNNNNNNNGC 8 cut(s) 252, 261, 309, 333, 405, 634, 1257, 1278
BstNI CCWGG 4 cut(s) 137, 353, 991, 1084
BstSCI CCNGG 5 cut(s) 135, 351, 989, 1082, 1092
BstUI CGCG 2 cut(s) 174, 550
BstV1I GCAGC 6 cut(s) 146, 239, 320, 494, 649, 1045
BstV2I GAAGAC 2 cut(s) 228, 352
BstX2I RGATCY 3 cut(s) 571, 729, 1200
BstXI CCANNNNNNTGG 1 cut(s) 184
BstYI RGATCY 3 cut(s) 571, 729, 1200
BstZ17I GTATAC 1 cut(s) 622
Bsu15I ATCGAT 2 cut(s) 180, 1047
BsuRI GGCC 3 cut(s) 283, 628, 1082
BsuTUI ATCGAT 2 cut(s) 180, 1047
BtgI CCRYGG 3 cut(s) 383, 548, 717
BtsCI GGATG 5 cut(s) 168, 442, 448, 454, 558
BtsIMutI CAGTG 3 cut(s) 613, 687, 823
Cac8I GCNNGC 3 cut(s) 202, 250, 1262
CaiI CAGNNNCTG 1 cut(s) 159
CciI TCATGA 3 cut(s) 271, 532, 679
CfoI GCGC 2 cut(s) 176, 248
Cfr10I RCCGGY 1 cut(s) 760
Cfr13I GGNCC 2 cut(s) 627, 1080
Cfr42I CCGCGG 1 cut(s) 551
ClaI ATCGAT 2 cut(s) 180, 1047
Csp6I GTAC 1 cut(s) 1107
CviAII CATG 5 cut(s) 272, 328, 533, 680, 1228
CviQI GTAC 1 cut(s) 1107
DdeI CTNAG 3 cut(s) 469, 615, 1029
DpnI GATC 8 cut(s) 6, 14, 573, 731, 900, 1050, 1173, 1202
DpnII GATC 8 cut(s) 4, 12, 571, 729, 898, 1048, 1171, 1200
DraIII CACNNNGTG 1 cut(s) 820
DrdI GACNNNNNNGTC 1 cut(s) 608
DseDI GACNNNNNNGTC 1 cut(s) 608
EaeI YGGCCR 1 cut(s) 281
EciI GGCGGA 1 cut(s) 1247
Ecl136II GAGCTC 1 cut(s) 454
Eco130I CCWWGG 1 cut(s) 873
Eco24I GRGCYC 1 cut(s) 456
Eco32I GATATC 1 cut(s) 316
Eco53kI GAGCTC 1 cut(s) 454
Eco57I CTGAAG 2 cut(s) 136, 446
EcoICRI GAGCTC 1 cut(s) 454
EcoO109I RGGNCCY 1 cut(s) 627
EcoRII CCWGG 4 cut(s) 135, 351, 989, 1082
EcoRV GATATC 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 873
EcoT38I GRGCYC 1 cut(s) 456
ErhI CCWWGG 1 cut(s) 873
Esp3I CGTCTC 1 cut(s) 1046
FaeI CATG 5 cut(s) 275, 331, 536, 683, 1231
FatI CATG 5 cut(s) 271, 327, 532, 679, 1227
FauI CCCGC 1 cut(s) 1220
FauNDI CATATG 1 cut(s) 756
FblI GTMKAC 2 cut(s) 621, 1208
Fnu4HI GCNGC 9 cut(s) 160, 253, 281, 301, 334, 370, 508, 638, 1034
FokI GGATG 5 cut(s) 155, 449, 455, 461, 565
FriOI GRGCYC 1 cut(s) 456
Fsp4HI GCNGC 9 cut(s) 160, 253, 281, 301, 334, 370, 508, 638, 1034
FspBI CTAG 4 cut(s) 249, 1052, 1121, 1282
GlaI GCGC 2 cut(s) 175, 247
GluI GCNGC 9 cut(s) 160, 253, 281, 301, 334, 370, 508, 638, 1034
GsaI CCCAGC 1 cut(s) 408
HaeIII GGCC 3 cut(s) 283, 628, 1082
HapII CCGG 4 cut(s) 457, 761, 807, 1094
HhaI GCGC 2 cut(s) 176, 248
Hin1I GRCGYC 1 cut(s) 603
Hin1II CATG 5 cut(s) 275, 331, 536, 683, 1231
Hin6I GCGC 2 cut(s) 174, 246
HinP1I GCGC 2 cut(s) 174, 246
HpaII CCGG 4 cut(s) 457, 761, 807, 1094
HphI GGTGA 3 cut(s) 372, 704, 851
Hpy166II GTNNAC 6 cut(s) 293, 622, 741, 856, 891, 1209
Hpy188I TCNGA 9 cut(s) 12, 31, 51, 87, 93, 99, 105, 587, 1176
Hpy188III TCNNGA 4 cut(s) 272, 533, 680, 902
Hpy8I GTNNAC 6 cut(s) 293, 622, 741, 856, 891, 1209
HpyAV CCTTC 2 cut(s) 879, 1126
HpyCH4III ACNGT 6 cut(s) 384, 479, 515, 785, 818, 1111
HpyCH4IV ACGT 5 cut(s) 42, 165, 603, 915, 1105
HpyCH4V TGCA 5 cut(s) 327, 399, 510, 521, 1239
HpyF10VI GCNNNNNNNGC 8 cut(s) 252, 261, 309, 333, 405, 634, 1257, 1278
HpyF3I CTNAG 3 cut(s) 469, 615, 1029
HpySE526I ACGT 5 cut(s) 42, 165, 603, 915, 1105
Hsp92I GRCGYC 1 cut(s) 603
Hsp92II CATG 5 cut(s) 275, 331, 536, 683, 1231
HspAI GCGC 2 cut(s) 174, 246
KspI CCGCGG 1 cut(s) 551
Kzo9I GATC 8 cut(s) 4, 12, 571, 729, 898, 1048, 1171, 1200
LmnI GCTCC 4 cut(s) 209, 459, 1086, 1220
Lsp1109I GCAGC 6 cut(s) 146, 239, 320, 494, 649, 1045
MaeI CTAG 4 cut(s) 249, 1052, 1121, 1282
MaeII ACGT 5 cut(s) 42, 165, 603, 915, 1105
MaeIII GTNAC 3 cut(s) 209, 479, 599
MalI GATC 8 cut(s) 6, 14, 573, 731, 900, 1050, 1173, 1202
MbiI CCGCTC 1 cut(s) 1215
MboI GATC 8 cut(s) 4, 12, 571, 729, 898, 1048, 1171, 1200
MboII GAAGA 4 cut(s) 142, 152, 233, 352
MflI RGATCY 3 cut(s) 571, 729, 1200
MhlI GDGCHC 2 cut(s) 456, 1183
MluCI AATT 3 cut(s) 119, 1012, 1114
MlyI GAGTC 3 cut(s) 91, 103, 109
MmeI TCCRAC 2 cut(s) 59, 477
MnlI CCTC 6 cut(s) 427, 433, 560, 666, 835, 1093
MseI TTAA 1 cut(s) 1266
MspA1I CMGCKG 2 cut(s) 550, 640
MspI CCGG 4 cut(s) 457, 761, 807, 1094
MspR9I CCNGG 5 cut(s) 137, 353, 991, 1084, 1094
MvaI CCWGG 4 cut(s) 137, 353, 991, 1084
MvnI CGCG 2 cut(s) 174, 550
MwoI GCNNNNNNNGC 8 cut(s) 252, 261, 309, 333, 405, 634, 1257, 1278
NciI CCSGG 1 cut(s) 1094
NdeI CATATG 1 cut(s) 756
NdeII GATC 8 cut(s) 4, 12, 571, 729, 898, 1048, 1171, 1200
NheI GCTAGC 1 cut(s) 248
NlaIII CATG 5 cut(s) 275, 331, 536, 683, 1231
NlaIV GGNNCC 2 cut(s) 349, 629
NmuCI GTSAC 2 cut(s) 209, 599
PagI TCATGA 3 cut(s) 271, 532, 679
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PfeI GAWTC 9 cut(s) 26, 46, 58, 70, 88, 106, 257, 803, 1244
PflMI CCANNNNNTGG 1 cut(s) 820
PkrI GCNGC 9 cut(s) 161, 254, 282, 302, 335, 371, 509, 639, 1035
PleI GAGTC 3 cut(s) 90, 102, 108
PpsI GAGTC 3 cut(s) 90, 102, 108
PsiI TTATAA 1 cut(s) 911
Psp124BI GAGCTC 1 cut(s) 456
Psp6I CCWGG 4 cut(s) 135, 351, 989, 1082
PspFI CCCAGC 1 cut(s) 404
PspGI CCWGG 4 cut(s) 135, 351, 989, 1082
PspN4I GGNNCC 2 cut(s) 349, 629
PspPI GGNCC 2 cut(s) 627, 1080
PstNI CAGNNNCTG 1 cut(s) 159
PsuI RGATCY 3 cut(s) 571, 729, 1200
RsaI GTAC 1 cut(s) 1108
RsaNI GTAC 1 cut(s) 1107
SacI GAGCTC 1 cut(s) 456
SacII CCGCGG 1 cut(s) 551
SaqAI TTAA 1 cut(s) 1266
SatI GCNGC 9 cut(s) 160, 253, 281, 301, 334, 370, 508, 638, 1034
Sau3AI GATC 8 cut(s) 4, 12, 571, 729, 898, 1048, 1171, 1200
Sau96I GGNCC 2 cut(s) 627, 1080
SchI GAGTC 3 cut(s) 91, 103, 109
ScrFI CCNGG 5 cut(s) 137, 353, 991, 1084, 1094
SduI GDGCHC 2 cut(s) 456, 1183
Sfr303I CCGCGG 1 cut(s) 551
SgrBI CCGCGG 1 cut(s) 551
SmlI CTYRAG 1 cut(s) 1127
SmoI CTYRAG 1 cut(s) 1127
Sse9I AATT 3 cut(s) 119, 1012, 1114
SspMI CTAG 4 cut(s) 249, 1052, 1121, 1282
SstI GAGCTC 1 cut(s) 456
StyD4I CCNGG 5 cut(s) 135, 351, 989, 1082, 1092
StyI CCWWGG 1 cut(s) 873
TaaI ACNGT 6 cut(s) 384, 479, 515, 785, 818, 1111
TaiI ACGT 5 cut(s) 45, 168, 606, 918, 1108
TaqI TCGA 3 cut(s) 180, 774, 1047
TasI AATT 3 cut(s) 119, 1012, 1114
TauI GCSGC 3 cut(s) 283, 303, 372
TfiI GAWTC 9 cut(s) 26, 46, 58, 70, 88, 106, 257, 803, 1244
Tru1I TTAA 1 cut(s) 1266
Tru9I TTAA 1 cut(s) 1266
TscAI CASTG 3 cut(s) 613, 694, 823
TseFI GTSAC 2 cut(s) 209, 599
TseI GCWGC 6 cut(s) 159, 252, 333, 507, 637, 1033
Tsp45I GTSAC 2 cut(s) 209, 599
TspDTI ATGAA 2 cut(s) 234, 998
TspGWI ACGGA 2 cut(s) 82, 734
TspRI CASTG 3 cut(s) 613, 694, 823
Van91I CCANNNNNTGG 1 cut(s) 820
XapI RAATTY 2 cut(s) 1012, 1114
XcmI CCANNNNNNNNNTGG 1 cut(s) 880
XmiI GTMKAC 2 cut(s) 621, 1208
XspI CTAG 4 cut(s) 249, 1052, 1121, 1282
ZraI GACGTC 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.