RLG00000026453

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0018238
Physical Location & Seq
Forward (+)
3149887 .. 3150422
536 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026453

Sequence Viewer

Length: 459 bp
ATGCCGGTCAAATGTTTCGACACCGACCGTAAATGCTGGATACCTCATTTCGGCTTCGACAGTGAGGGTTTCCCCTTTGCGGGTGAGGCTTTAGTCGTGGACTTGGATAAACCTAGCAAGGAGAAGTTGCTATTGGGATTGACTGATGATTTGAAAGGTTCTTATCTTACTAGATACGGGTCTGTGAATGTGGAACCCTGGTTGCTTGGCTTATTGGGAAATTTGTGTGAAGTATCTAAGCAGCATCGTCTCATCGATCTAGGAGATGGAAAAATCTGCTTTGTTAGGGCCAGGAGCTACCCAGTTGTTGAACGTACTATAAATTCAGAAGGGCTTGAGAAGTTTGATCCGAGAGCACAAGCCTTGCCCTACAAGTTCCTGTCTACACGCACCTTTACCTTCATGCCCCATTGCAAGGAAAGCTGCTTTGTCCGCCTGCTTAAATGCTTTGTGCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

17.37

Weight (kDa)

8.47

Isoelectric Point (pI)

32.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018238)

Species Orthologous Gene IDs
rosa_laevigata RLG00000026445 RLG00000026447 RLG00000026453
rosa_multiflora Rmu_sc0006315.1_g000005 Rmu_sc0013545.1_g000003
rosa_roxburghii Rroxscaffold_4G00280560
rosa_rugosa Rorug01G0407600 Rorug01G0407600 Rorug01G0407700
rosa_samantha Rh1AG421800
rosa_wichuraiana Rw1G037550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 383
AciI CCGC 2 cut(s) 80, 433
AclWI GGATC 1 cut(s) 341
AcsI RAATTY 2 cut(s) 220, 322
AfaI GTAC 1 cut(s) 316
AfiI CCNNNNNNNGG 4 cut(s) 50, 79, 80, 415
AgsI TTSAA 2 cut(s) 154, 311
AjnI CCWGG 2 cut(s) 197, 290
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
AluBI AGCT 2 cut(s) 297, 423
AluI AGCT 2 cut(s) 297, 423
Alw21I GWGCWC 1 cut(s) 358
Alw26I GTCTC 1 cut(s) 254
AlwI GGATC 1 cut(s) 341
AoxI GGCC 1 cut(s) 288
ApeKI GCWGC 2 cut(s) 241, 423
ApoI RAATTY 2 cut(s) 220, 322
ArsI GACNNNNNNTTYG 2 cut(s) 133, 165
AspLEI GCGC 1 cut(s) 456
AspS9I GGNCC 1 cut(s) 288
AsuHPI GGTGA 1 cut(s) 95
Bbv12I GWGCWC 1 cut(s) 358
BbvI GCAGC 2 cut(s) 253, 410
BccI CCATC 1 cut(s) 260
BciT130I CCWGG 2 cut(s) 199, 292
BciVI GTATCC 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 254
BfaI CTAG 4 cut(s) 114, 171, 260, 457
BfuI GTATCC 1 cut(s) 33
BisI GCNGC 2 cut(s) 242, 424
BlsI GCNGC 2 cut(s) 243, 425
Bme1390I CCNGG 2 cut(s) 199, 292
BmgT120I GGNCC 1 cut(s) 288
BmiI GGNNCC 1 cut(s) 195
BmrFI CCNGG 2 cut(s) 199, 292
BmrI ACTGGG 1 cut(s) 296
BmsI GCATC 1 cut(s) 253
BmuI ACTGGG 1 cut(s) 296
BpuEI CTTGAG 1 cut(s) 356
Bsa29I ATCGAT 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 197
Bsc4I CCNNNNNNNGG 4 cut(s) 50, 79, 80, 415
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 1 cut(s) 302
Bse3DI GCAATG 1 cut(s) 409
BseBI CCWGG 2 cut(s) 199, 292
BseCI ATCGAT 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 197
BseLI CCNNNNNNNGG 4 cut(s) 50, 79, 80, 415
BseMI GCAATG 1 cut(s) 409
BseNI ACTGG 1 cut(s) 302
BseXI GCAGC 2 cut(s) 253, 410
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 1 cut(s) 290
BshVI ATCGAT 1 cut(s) 255
BsiEI CGRYCG 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 358
BsiSI CCGG 1 cut(s) 5
BslI CCNNNNNNNGG 4 cut(s) 50, 79, 80, 415
BsmAI GTCTC 1 cut(s) 254
BsmBI CGTCTC 1 cut(s) 254
BsnI GGCC 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 358
Bsp143I GATC 2 cut(s) 256, 346
BspACI CCGC 2 cut(s) 80, 433
BspANI GGCC 1 cut(s) 290
BspDI ATCGAT 1 cut(s) 255
BspLI GGNNCC 1 cut(s) 195
BspPI GGATC 1 cut(s) 341
BsrDI GCAATG 1 cut(s) 409
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 1 cut(s) 302
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 197
BssMI GATC 2 cut(s) 256, 346
Bst2UI CCWGG 2 cut(s) 199, 292
Bst4CI ACNGT 2 cut(s) 29, 62
BstC8I GCNNGC 1 cut(s) 437
BstDEI CTNAG 1 cut(s) 237
BstHHI GCGC 1 cut(s) 456
BstKTI GATC 2 cut(s) 259, 349
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 2 cut(s) 256, 346
BstMCI CGRYCG 1 cut(s) 28
BstMWI GCNNNNNNNGC 4 cut(s) 86, 420, 432, 453
BstNI CCWGG 2 cut(s) 199, 292
BstSCI CCNGG 2 cut(s) 197, 290
BstV1I GCAGC 2 cut(s) 253, 410
Bsu15I ATCGAT 1 cut(s) 255
BsuI GTATCC 1 cut(s) 33
BsuRI GGCC 1 cut(s) 290
BsuTUI ATCGAT 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 67
Cac8I GCNNGC 1 cut(s) 437
CfoI GCGC 1 cut(s) 456
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 1 cut(s) 288
ClaI ATCGAT 1 cut(s) 255
Csp6I GTAC 1 cut(s) 315
CviAII CATG 1 cut(s) 403
CviJI RGCY 8 cut(s) 54, 89, 210, 290, 297, 334, 362, 423
CviKI_1 RGCY 8 cut(s) 54, 89, 210, 290, 297, 334, 362, 423
CviQI GTAC 1 cut(s) 315
DdeI CTNAG 1 cut(s) 237
DpnI GATC 2 cut(s) 258, 348
DpnII GATC 2 cut(s) 256, 346
EciI GGCGGA 1 cut(s) 422
EcoRII CCWGG 2 cut(s) 197, 290
Esp3I CGTCTC 1 cut(s) 254
FaeI CATG 1 cut(s) 406
FaiI YATR 2 cut(s) 320, 404
FatI CATG 1 cut(s) 402
FauI CCCGC 1 cut(s) 73
FblI GTMKAC 1 cut(s) 383
Fnu4HI GCNGC 2 cut(s) 242, 424
Fsp4HI GCNGC 2 cut(s) 242, 424
FspBI CTAG 4 cut(s) 114, 171, 260, 457
GlaI GCGC 1 cut(s) 455
GluI GCNGC 2 cut(s) 242, 424
HaeIII GGCC 1 cut(s) 290
HapII CCGG 1 cut(s) 5
HhaI GCGC 1 cut(s) 456
Hin1II CATG 1 cut(s) 406
Hin6I GCGC 1 cut(s) 454
HinP1I GCGC 1 cut(s) 454
HpaII CCGG 1 cut(s) 5
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 2 cut(s) 100, 384
Hpy188I TCNGA 2 cut(s) 328, 351
Hpy8I GTNNAC 2 cut(s) 100, 384
HpyAV CCTTC 2 cut(s) 323, 409
HpyCH4III ACNGT 2 cut(s) 29, 62
HpyCH4IV ACGT 1 cut(s) 313
HpyCH4V TGCA 1 cut(s) 414
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 420, 432, 453
HpyF3I CTNAG 1 cut(s) 237
HpySE526I ACGT 1 cut(s) 313
Hsp92II CATG 1 cut(s) 406
HspAI GCGC 1 cut(s) 454
Kzo9I GATC 2 cut(s) 256, 346
LmnI GCTCC 1 cut(s) 294
LpnPI CCDG 9 cut(s) 18, 22, 184, 211, 277, 304, 315, 392, 449
Lsp1109I GCAGC 2 cut(s) 253, 410
LweI GCATC 1 cut(s) 253
MaeI CTAG 4 cut(s) 114, 171, 260, 457
MaeII ACGT 1 cut(s) 313
MalI GATC 2 cut(s) 258, 348
MboI GATC 2 cut(s) 256, 346
MhlI GDGCHC 1 cut(s) 358
MluCI AATT 2 cut(s) 220, 322
MnlI CCTC 3 cut(s) 54, 58, 79
MseI TTAA 1 cut(s) 441
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 2 cut(s) 199, 292
MvaI CCWGG 2 cut(s) 199, 292
MwoI GCNNNNNNNGC 4 cut(s) 86, 420, 432, 453
NdeII GATC 2 cut(s) 256, 346
NlaIII CATG 1 cut(s) 406
NlaIV GGNNCC 1 cut(s) 195
PkrI GCNGC 2 cut(s) 243, 425
Psp6I CCWGG 2 cut(s) 197, 290
PspGI CCWGG 2 cut(s) 197, 290
PspN4I GGNNCC 1 cut(s) 195
PspPI GGNCC 1 cut(s) 288
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 2 cut(s) 242, 424
Sau3AI GATC 2 cut(s) 256, 346
Sau96I GGNCC 1 cut(s) 288
ScrFI CCNGG 2 cut(s) 199, 292
SduI GDGCHC 1 cut(s) 358
SetI ASST 8 cut(s) 46, 115, 160, 299, 316, 395, 401, 425
SfaNI GCATC 1 cut(s) 253
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse9I AATT 2 cut(s) 220, 322
SsiI CCGC 2 cut(s) 80, 433
SspMI CTAG 4 cut(s) 114, 171, 260, 457
StyD4I CCNGG 2 cut(s) 197, 290
TaaI ACNGT 2 cut(s) 29, 62
TaiI ACGT 1 cut(s) 316
TaqI TCGA 3 cut(s) 18, 57, 255
TasI AATT 2 cut(s) 220, 322
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 1 cut(s) 67
TseI GCWGC 2 cut(s) 241, 423
TspDTI ATGAA 1 cut(s) 391
TspRI CASTG 1 cut(s) 67
XapI RAATTY 2 cut(s) 220, 322
XmiI GTMKAC 1 cut(s) 383
XspI CTAG 4 cut(s) 114, 171, 260, 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.