Rmu_sc0006315.1_g000005

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006315.1
OG0018238
Physical Location & Seq
Reverse (-)
25286 .. 26518
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006315.1_g000005.1.cds

Sequence Viewer

Length: 1233 bp
atggatcagatcaaagtgagtgaatcagaaagggagaatgtgaatcggaatcggaatcgcaaacggagtccgaatccgagttcgaatcgcaaccccaaattgtatgtatgttgccaggaagaaaactgctccaggggctgctacctcatccgcgccatcgatttggagcgtttgatggcttgctcctgtgactttgatgaagacgaatgtgtggaaatcaagtgcgctagctgcgaatcttgccccgatcaagatttgcggccagtcggtttactctgcggcgaccagtatgatgtccccagctggatgggctgctgtccctttggctcccaagttgtcttcgtaggcggcgagttagcaccgtggtcgcatgatttcaaacccagccgaaaggttttcgtctatgacattgaggataaggagaaaggcaacaacatcaaggagttggacaaaagctgcaacggtcttgcaaatatccatcatgacatatattatccgcggatgatggagataggaggagatctctatgctctcggagtcgtcaaatgtgacgtcagtgtctctcaggtatacaggcgccaatcgcagcggtgggaagctctgcctccacccataccgagtttcagtcatgattgcactcgtcgtactctattttctctactttccacggacaacaagatctttctgtccacctattccccacaaatgccggtcaaatgtttcgacaccgactgtaaatgctggattgctgattccggcttccacagtgaggttttcccctttgtgggtgaggctttagtcgtggacttggataaacctagcaaggagaagttgctgtttgccaatggtcgtgatactatattcgtgtggcgattgggattgactgatgatctgaaaggttcttgtcttaccagatacgggtctgtgaatgtgaaacccaggttgcttggcttattgggagacaaatttgaagtatctaagcagcatcatctcatcgatctaggagatggaaaaatctgcttggttagagccaggagctacccagttattgaaggttatataaattcagaagggcttgagaaggtgtgtgttgttatcatagtattcaaatatgagtttgatccgagagcacaagccttggcctacaagttcctgtctacccgcaactttaccttcatgccccattgcaaggaatgcagctttgtcagcctgcttaaatgctttgtgcgctag

Protein Analysis

410

Amino Acids

46.7

Weight (kDa)

6.47

Isoelectric Point (pI)

51.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018238)

Species Orthologous Gene IDs
rosa_laevigata RLG00000026445 RLG00000026447 RLG00000026453
rosa_multiflora Rmu_sc0006315.1_g000005 Rmu_sc0013545.1_g000003
rosa_roxburghii Rroxscaffold_4G00280560
rosa_rugosa Rorug01G0407600 Rorug01G0407600 Rorug01G0407700
rosa_samantha Rh1AG421800
rosa_wichuraiana Rw1G037550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 557
AatII GACGTC 1 cut(s) 555
AccB1I GGYRCC 1 cut(s) 576
AccI GTMKAC 2 cut(s) 570, 1157
AccII CGCG 2 cut(s) 153, 499
AciI CCGC 8 cut(s) 151, 259, 279, 348, 497, 499, 589, 1162
AclWI GGATC 2 cut(s) 12, 1115
AcoI YGGCCR 1 cut(s) 260
AcsI RAATTY 2 cut(s) 965, 1063
AcyI GRCGYC 2 cut(s) 552, 577
AfaI GTAC 1 cut(s) 646
AfiI CCNNNNNNNGG 5 cut(s) 769, 784, 785, 918, 1189
AgsI TTSAA 4 cut(s) 379, 971, 1052, 1108
AjnI CCWGG 4 cut(s) 114, 131, 938, 1031
AluBI AGCT 6 cut(s) 231, 303, 456, 599, 1038, 1200
AluI AGCT 6 cut(s) 231, 303, 456, 599, 1038, 1200
Alw21I GWGCWC 1 cut(s) 1132
Alw26I GTCTC 2 cut(s) 565, 954
AlwI GGATC 2 cut(s) 12, 1115
AlwNI CAGNNNCTG 1 cut(s) 138
AoxI GGCC 2 cut(s) 260, 1140
ApeKI GCWGC 7 cut(s) 138, 231, 312, 456, 586, 982, 1197
ApoI RAATTY 2 cut(s) 965, 1063
ArsI GACNNNNNNTTYG 2 cut(s) 537, 569
AspLEI GCGC 4 cut(s) 155, 227, 579, 1230
AsuHPI GGTGA 1 cut(s) 800
AsuII TTCGAA 1 cut(s) 83
AsuNHI GCTAGC 1 cut(s) 227
BanI GGYRCC 1 cut(s) 576
BbsI GAAGAC 2 cut(s) 207, 331
Bbv12I GWGCWC 1 cut(s) 1132
BbvI GCAGC 7 cut(s) 125, 218, 299, 443, 598, 994, 1209
BccI CCATC 6 cut(s) 164, 169, 301, 486, 499, 1001
BcgI CGANNNNNNTGC 2 cut(s) 348, 382
BciT130I CCWGG 4 cut(s) 116, 133, 940, 1033
BcoDI GTCTC 2 cut(s) 565, 954
BfaI CTAG 4 cut(s) 228, 819, 1001, 1231
BfoI RGCGCY 1 cut(s) 580
BglII AGATCT 2 cut(s) 520, 678
Bme1390I CCNGG 4 cut(s) 116, 133, 940, 1033
BmiI GGNNCC 2 cut(s) 328, 578
BmrFI CCNGG 4 cut(s) 116, 133, 940, 1033
BmrI ACTGGG 1 cut(s) 1037
BmsI GCATC 1 cut(s) 994
BmtI GCTAGC 1 cut(s) 231
BmuI ACTGGG 1 cut(s) 1037
BpiI GAAGAC 2 cut(s) 207, 331
BplI GAGNNNNNCTC 2 cut(s) 507, 539
BpmI CTGGAG 1 cut(s) 115
Bpu14I TTCGAA 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 1097
Bsa29I ATCGAT 2 cut(s) 159, 996
BsaHI GRCGYC 2 cut(s) 552, 577
BsaJI CCNNGG 6 cut(s) 132, 362, 497, 666, 938, 1137
Bsc4I CCNNNNNNNGG 5 cut(s) 769, 784, 785, 918, 1189
Bse118I RCCGGY 1 cut(s) 709
Bse1I ACTGG 3 cut(s) 263, 286, 1043
Bse3DI GCAATG 1 cut(s) 1183
BseBI CCWGG 4 cut(s) 116, 133, 940, 1033
BseCI ATCGAT 2 cut(s) 159, 996
BseDI CCNNGG 6 cut(s) 132, 362, 497, 666, 938, 1137
BseGI GGATG 3 cut(s) 147, 312, 507
BseLI CCNNNNNNNGG 5 cut(s) 769, 784, 785, 918, 1189
BseMI GCAATG 1 cut(s) 1183
BseMII CTCAG 1 cut(s) 578
BseNI ACTGG 3 cut(s) 263, 286, 1043
BseRI GAGGAG 1 cut(s) 531
BseXI GCAGC 7 cut(s) 125, 218, 299, 443, 598, 994, 1209
BseYI CCCAGC 2 cut(s) 299, 383
Bsh1236I CGCG 2 cut(s) 153, 499
BshFI GGCC 2 cut(s) 262, 1142
BshNI GGYRCC 1 cut(s) 576
BshVI ATCGAT 2 cut(s) 159, 996
BsiHKAI GWGCWC 1 cut(s) 1132
BsiSI CCGG 2 cut(s) 710, 756
BslFI GGGAC 2 cut(s) 281, 303
BslI CCNNNNNNNGG 5 cut(s) 769, 784, 785, 918, 1189
BsmAI GTCTC 2 cut(s) 565, 954
BsmFI GGGAC 2 cut(s) 281, 303
BsmI GAATGC 1 cut(s) 1199
BsnI GGCC 2 cut(s) 262, 1142
Bsp119I TTCGAA 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 1132
Bsp143I GATC 8 cut(s) 4, 9, 247, 520, 678, 889, 997, 1120
BspACI CCGC 8 cut(s) 151, 259, 279, 348, 497, 499, 589, 1162
BspANI GGCC 2 cut(s) 262, 1142
BspCNI CTCAG 1 cut(s) 577
BspDI ATCGAT 2 cut(s) 159, 996
BspFNI CGCG 2 cut(s) 153, 499
BspHI TCATGA 2 cut(s) 481, 628
BspLI GGNNCC 2 cut(s) 328, 578
BspOI GCTAGC 1 cut(s) 231
BspPI GGATC 2 cut(s) 12, 1115
BspT104I TTCGAA 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 576
BsrDI GCAATG 1 cut(s) 1183
BsrFI RCCGGY 1 cut(s) 709
BsrI ACTGG 3 cut(s) 263, 286, 1043
BssAI RCCGGY 1 cut(s) 709
BssECI CCNNGG 6 cut(s) 132, 362, 497, 666, 938, 1137
BssMI GATC 8 cut(s) 4, 9, 247, 520, 678, 889, 997, 1120
BssNAI GTATAC 1 cut(s) 571
BssNI GRCGYC 2 cut(s) 552, 577
BssT1I CCWWGG 1 cut(s) 1137
Bst1107I GTATAC 1 cut(s) 571
Bst2UI CCWGG 4 cut(s) 116, 133, 940, 1033
Bst4CI ACNGT 4 cut(s) 363, 464, 734, 767
BstACI GRCGYC 2 cut(s) 552, 577
BstAPI GCANNNNNTGC 1 cut(s) 1194
BstBI TTCGAA 1 cut(s) 83
BstC8I GCNNGC 3 cut(s) 181, 229, 1211
BstDEI CTNAG 2 cut(s) 564, 978
BstDSI CCRYGG 3 cut(s) 362, 497, 666
BstF5I GGATG 3 cut(s) 147, 312, 507
BstFNI CGCG 2 cut(s) 153, 499
BstH2I RGCGCY 1 cut(s) 580
BstHHI GCGC 4 cut(s) 155, 227, 579, 1230
BstKTI GATC 8 cut(s) 7, 12, 250, 523, 681, 892, 1000, 1123
BstMAI GTCTC 2 cut(s) 565, 954
BstMBI GATC 8 cut(s) 4, 9, 247, 520, 678, 889, 997, 1120
BstMWI GCNNNNNNNGC 8 cut(s) 135, 231, 240, 309, 583, 1194, 1206, 1227
BstNI CCWGG 4 cut(s) 116, 133, 940, 1033
BstSCI CCNGG 4 cut(s) 114, 131, 938, 1031
BstUI CGCG 2 cut(s) 153, 499
BstV1I GCAGC 7 cut(s) 125, 218, 299, 443, 598, 994, 1209
BstV2I GAAGAC 2 cut(s) 207, 331
BstX2I RGATCY 2 cut(s) 520, 678
BstXI CCANNNNNNTGG 2 cut(s) 163, 307
BstYI RGATCY 2 cut(s) 520, 678
BstZ17I GTATAC 1 cut(s) 571
Bsu15I ATCGAT 2 cut(s) 159, 996
BsuRI GGCC 2 cut(s) 262, 1142
BsuTUI ATCGAT 2 cut(s) 159, 996
BtgI CCRYGG 3 cut(s) 362, 497, 666
BtsCI GGATG 3 cut(s) 147, 312, 507
BtsIMutI CAGTG 2 cut(s) 562, 772
Cac8I GCNNGC 3 cut(s) 181, 229, 1211
CaiI CAGNNNCTG 1 cut(s) 138
CciI TCATGA 2 cut(s) 481, 628
CfoI GCGC 4 cut(s) 155, 227, 579, 1230
Cfr10I RCCGGY 1 cut(s) 709
Cfr42I CCGCGG 1 cut(s) 500
ClaI ATCGAT 2 cut(s) 159, 996
Csp6I GTAC 1 cut(s) 645
CviAII CATG 4 cut(s) 371, 482, 629, 1177
CviQI GTAC 1 cut(s) 645
DdeI CTNAG 2 cut(s) 564, 978
DinI GGCGCC 1 cut(s) 578
DpnI GATC 8 cut(s) 6, 11, 249, 522, 680, 891, 999, 1122
DpnII GATC 8 cut(s) 4, 9, 247, 520, 678, 889, 997, 1120
DrdI GACNNNNNNGTC 1 cut(s) 557
DseDI GACNNNNNNGTC 1 cut(s) 557
EaeI YGGCCR 1 cut(s) 260
Eco130I CCWWGG 1 cut(s) 1137
EcoRII CCWGG 4 cut(s) 114, 131, 938, 1031
EcoT14I CCWWGG 1 cut(s) 1137
EgeI GGCGCC 1 cut(s) 578
EheI GGCGCC 1 cut(s) 578
ErhI CCWWGG 1 cut(s) 1137
FaeI CATG 4 cut(s) 374, 485, 632, 1180
FaqI GGGAC 2 cut(s) 281, 303
FatI CATG 4 cut(s) 370, 481, 628, 1176
FauI CCCGC 1 cut(s) 1169
FblI GTMKAC 2 cut(s) 570, 1157
FokI GGATG 3 cut(s) 134, 319, 514
FspBI CTAG 4 cut(s) 228, 819, 1001, 1231
GlaI GCGC 4 cut(s) 154, 226, 578, 1229
GsaI CCCAGC 2 cut(s) 303, 387
GsuI CTGGAG 1 cut(s) 115
HaeII RGCGCY 1 cut(s) 580
HaeIII GGCC 2 cut(s) 262, 1142
HapII CCGG 2 cut(s) 710, 756
HhaI GCGC 4 cut(s) 155, 227, 579, 1230
Hin1I GRCGYC 2 cut(s) 552, 577
Hin1II CATG 4 cut(s) 374, 485, 632, 1180
Hin6I GCGC 4 cut(s) 153, 225, 577, 1228
HinP1I GCGC 4 cut(s) 153, 225, 577, 1228
HpaII CCGG 2 cut(s) 710, 756
HphI GGTGA 1 cut(s) 800
Hpy166II GTNNAC 5 cut(s) 272, 571, 690, 805, 1158
Hpy188III TCNNGA 4 cut(s) 251, 482, 629, 851
Hpy8I GTNNAC 5 cut(s) 272, 571, 690, 805, 1158
Hpy99I CGWCG 1 cut(s) 645
HpyAV CCTTC 4 cut(s) 1046, 1064, 1075, 1183
HpyCH4III ACNGT 4 cut(s) 363, 464, 734, 767
HpyCH4IV ACGT 1 cut(s) 552
HpyCH4V TGCA 5 cut(s) 459, 470, 636, 1188, 1197
HpyF10VI GCNNNNNNNGC 8 cut(s) 135, 231, 240, 309, 583, 1194, 1206, 1227
HpyF3I CTNAG 2 cut(s) 564, 978
HpySE526I ACGT 1 cut(s) 552
Hsp92I GRCGYC 2 cut(s) 552, 577
Hsp92II CATG 4 cut(s) 374, 485, 632, 1180
HspAI GCGC 4 cut(s) 153, 225, 577, 1228
KasI GGCGCC 1 cut(s) 576
KspI CCGCGG 1 cut(s) 500
Kzo9I GATC 8 cut(s) 4, 9, 247, 520, 678, 889, 997, 1120
LmnI GCTCC 5 cut(s) 134, 166, 188, 332, 1035
Lsp1109I GCAGC 7 cut(s) 125, 218, 299, 443, 598, 994, 1209
LweI GCATC 1 cut(s) 994
MaeI CTAG 4 cut(s) 228, 819, 1001, 1231
MaeII ACGT 1 cut(s) 552
MaeIII GTNAC 2 cut(s) 188, 548
MalI GATC 8 cut(s) 6, 11, 249, 522, 680, 891, 999, 1122
MboI GATC 8 cut(s) 4, 9, 247, 520, 678, 889, 997, 1120
MboII GAAGA 3 cut(s) 131, 212, 331
MflI RGATCY 2 cut(s) 520, 678
MhlI GDGCHC 1 cut(s) 1132
MluCI AATT 3 cut(s) 98, 965, 1063
Mly113I GGCGCC 1 cut(s) 577
MlyI GAGTC 2 cut(s) 76, 546
MmeI TCCRAC 1 cut(s) 426
MnlI CCTC 6 cut(s) 155, 406, 509, 615, 763, 784
MseI TTAA 1 cut(s) 1215
MspA1I CMGCKG 3 cut(s) 303, 499, 589
MspI CCGG 2 cut(s) 710, 756
MspR9I CCNGG 4 cut(s) 116, 133, 940, 1033
Mva1269I GAATGC 1 cut(s) 1199
MvaI CCWGG 4 cut(s) 116, 133, 940, 1033
MvnI CGCG 2 cut(s) 153, 499
MwoI GCNNNNNNNGC 8 cut(s) 135, 231, 240, 309, 583, 1194, 1206, 1227
NarI GGCGCC 1 cut(s) 577
NdeII GATC 8 cut(s) 4, 9, 247, 520, 678, 889, 997, 1120
NheI GCTAGC 1 cut(s) 227
NlaIII CATG 4 cut(s) 374, 485, 632, 1180
NlaIV GGNNCC 2 cut(s) 328, 578
NmuCI GTSAC 2 cut(s) 188, 548
NspV TTCGAA 1 cut(s) 83
PagI TCATGA 2 cut(s) 481, 628
PcsI WCGNNNNNNNCGW 1 cut(s) 348
PctI GAATGC 1 cut(s) 1199
PfeI GAWTC 8 cut(s) 23, 43, 49, 55, 73, 85, 236, 752
PleI GAGTC 2 cut(s) 75, 545
PluTI GGCGCC 1 cut(s) 580
PpsI GAGTC 2 cut(s) 75, 545
Psp6I CCWGG 4 cut(s) 114, 131, 938, 1031
PspFI CCCAGC 2 cut(s) 299, 383
PspGI CCWGG 4 cut(s) 114, 131, 938, 1031
PspN4I GGNNCC 2 cut(s) 328, 578
PstNI CAGNNNCTG 1 cut(s) 138
PsuI RGATCY 2 cut(s) 520, 678
PvuII CAGCTG 1 cut(s) 303
RsaI GTAC 1 cut(s) 646
RsaNI GTAC 1 cut(s) 645
SacII CCGCGG 1 cut(s) 500
SaqAI TTAA 1 cut(s) 1215
Sau3AI GATC 8 cut(s) 4, 9, 247, 520, 678, 889, 997, 1120
SchI GAGTC 2 cut(s) 76, 546
ScrFI CCNGG 4 cut(s) 116, 133, 940, 1033
SduI GDGCHC 1 cut(s) 1132
SfaNI GCATC 1 cut(s) 994
SfoI GGCGCC 1 cut(s) 578
Sfr303I CCGCGG 1 cut(s) 500
SfuI TTCGAA 1 cut(s) 83
SgrBI CCGCGG 1 cut(s) 500
SmlI CTYRAG 1 cut(s) 1076
SmoI CTYRAG 1 cut(s) 1076
Sse9I AATT 3 cut(s) 98, 965, 1063
SsiI CCGC 8 cut(s) 151, 259, 279, 348, 497, 499, 589, 1162
SspDI GGCGCC 1 cut(s) 576
SspMI CTAG 4 cut(s) 228, 819, 1001, 1231
StyD4I CCNGG 4 cut(s) 114, 131, 938, 1031
StyI CCWWGG 1 cut(s) 1137
TaaI ACNGT 4 cut(s) 363, 464, 734, 767
TaiI ACGT 1 cut(s) 555
TaqI TCGA 4 cut(s) 83, 159, 723, 996
TasI AATT 3 cut(s) 98, 965, 1063
TauI GCSGC 3 cut(s) 262, 282, 351
TfiI GAWTC 8 cut(s) 23, 43, 49, 55, 73, 85, 236, 752
Tru1I TTAA 1 cut(s) 1215
Tru9I TTAA 1 cut(s) 1215
TscAI CASTG 2 cut(s) 562, 772
TseFI GTSAC 2 cut(s) 188, 548
TseI GCWGC 7 cut(s) 138, 231, 312, 456, 586, 982, 1197
Tsp45I GTSAC 2 cut(s) 188, 548
TspDTI ATGAA 2 cut(s) 213, 1165
TspGWI ACGGA 2 cut(s) 79, 683
TspRI CASTG 2 cut(s) 562, 772
XapI RAATTY 2 cut(s) 965, 1063
XmiI GTMKAC 2 cut(s) 570, 1157
XspI CTAG 4 cut(s) 228, 819, 1001, 1231
ZraI GACGTC 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.