Mur ligase family, catalytic domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD01G1208200.v1.1 MD07G1278800.v1.1 |
| prunus_persica | Prupe.2G300700_v2.0.a1 |
| pyrus_communis | pycom01g21880 |
| rosa_chinensis | RchiOBHm_Chr1g0378261 |
| rosa_laevigata | RLG00000026454 RLG00000026455 |
| rosa_multiflora | Rmu_sc0006315.1_g000004 Rmu_sc0006315.1_g000010 Rmu_sc0013545.1_g000004 |
| rosa_roxburghii | Rroxscaffold_4G00280540 Rroxscaffold_4G00280550 Rroxscaffold_4G00280600 |
| rosa_rugosa | Rorug01G0407600 Rorug01G0407800 |
| rosa_samantha | Rh1AG421700 Rh1AG422200 Rh1BG386900 Rh1CG400400 Rh1DG418000 |
| rosa_wichuraiana | Rw0G013300 Rw1G037520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 597 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 341 |
| AatII | GACGTC | 1 cut(s) | 345 |
| Acc36I | ACCTGC | 1 cut(s) | 597 |
| AccB1I | GGYRCC | 1 cut(s) | 73 |
| AccBSI | CCGCTC | 2 cut(s) | 205, 267 |
| AccIII | TCCGGA | 1 cut(s) | 770 |
| AclWI | GGATC | 3 cut(s) | 283, 490, 794 |
| AcyI | GRCGYC | 2 cut(s) | 260, 342 |
| AfaI | GTAC | 2 cut(s) | 188, 873 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 55, 94, 174, 231, 255, 784, 809 |
| AflIII | ACRYGT | 2 cut(s) | 651, 905 |
| AgsI | TTSAA | 1 cut(s) | 762 |
| AjiI | CACGTC | 1 cut(s) | 316 |
| AjnI | CCWGG | 1 cut(s) | 592 |
| AluBI | AGCT | 5 cut(s) | 37, 124, 448, 815, 896 |
| AluI | AGCT | 5 cut(s) | 37, 124, 448, 815, 896 |
| Alw21I | GWGCWC | 2 cut(s) | 126, 817 |
| Alw26I | GTCTC | 2 cut(s) | 26, 768 |
| AlwI | GGATC | 3 cut(s) | 283, 490, 794 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 538 |
| Ama87I | CYCGRG | 2 cut(s) | 100, 117 |
| Aor13HI | TCCGGA | 1 cut(s) | 770 |
| AoxI | GGCC | 1 cut(s) | 57 |
| ApeKI | GCWGC | 4 cut(s) | 34, 445, 529, 695 |
| AspLEI | GCGC | 1 cut(s) | 87 |
| AspS9I | GGNCC | 2 cut(s) | 104, 211 |
| AsuC2I | CCSGG | 3 cut(s) | 89, 200, 226 |
| AsuHPI | GGTGA | 1 cut(s) | 578 |
| AsuII | TTCGAA | 1 cut(s) | 955 |
| AvaI | CYCGRG | 2 cut(s) | 100, 117 |
| AvaII | GGWCC | 2 cut(s) | 104, 211 |
| BaeGI | GKGCMC | 1 cut(s) | 76 |
| BanI | GGYRCC | 1 cut(s) | 73 |
| BanII | GRGCYC | 4 cut(s) | 126, 225, 689, 817 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 975, 1007 |
| BbsI | GAAGAC | 3 cut(s) | 34, 119, 933 |
| Bbv12I | GWGCWC | 2 cut(s) | 126, 817 |
| BbvCI | CCTCAGC | 1 cut(s) | 81 |
| BbvI | GCAGC | 4 cut(s) | 46, 457, 541, 682 |
| BccI | CCATC | 1 cut(s) | 814 |
| BceAI | ACGGC | 3 cut(s) | 236, 352, 661 |
| BciT130I | CCWGG | 1 cut(s) | 594 |
| BclI | TGATCA | 1 cut(s) | 583 |
| BcnI | CCSGG | 3 cut(s) | 89, 200, 226 |
| BcoDI | GTCTC | 2 cut(s) | 26, 768 |
| BfoI | RGCGCY | 1 cut(s) | 88 |
| BfuAI | ACCTGC | 1 cut(s) | 597 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 847 |
| BisI | GCNGC | 8 cut(s) | 32, 35, 130, 158, 206, 446, 530, 696 |
| BlpI | GCTNAGC | 1 cut(s) | 125 |
| BlsI | GCNGC | 8 cut(s) | 33, 36, 131, 159, 207, 447, 531, 697 |
| Bme1390I | CCNGG | 4 cut(s) | 89, 200, 226, 594 |
| Bme18I | GGWCC | 2 cut(s) | 104, 211 |
| BmeT110I | CYCGRG | 2 cut(s) | 100, 117 |
| BmgBI | CACGTC | 1 cut(s) | 316 |
| BmgT120I | GGNCC | 2 cut(s) | 104, 211 |
| BmiI | GGNNCC | 5 cut(s) | 75, 105, 212, 213, 222 |
| BmrFI | CCNGG | 4 cut(s) | 89, 200, 226, 594 |
| BmrI | ACTGGG | 2 cut(s) | 26, 561 |
| BmsI | GCATC | 3 cut(s) | 561, 739, 817 |
| BmuI | ACTGGG | 2 cut(s) | 26, 561 |
| BoxI | GACNNNNGTC | 1 cut(s) | 102 |
| BpiI | GAAGAC | 3 cut(s) | 34, 119, 933 |
| Bpu10I | CCTNAGC | 1 cut(s) | 81 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 125 |
| Bpu14I | TTCGAA | 1 cut(s) | 955 |
| BpuMI | CCSGG | 3 cut(s) | 89, 200, 226 |
| BsaHI | GRCGYC | 2 cut(s) | 260, 342 |
| BsaI | GGTCTC | 2 cut(s) | 26, 768 |
| BsaJI | CCNNGG | 1 cut(s) | 224 |
| BsaWI | WCCGGW | 1 cut(s) | 770 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 55, 94, 174, 231, 255, 784, 809 |
| Bse1I | ACTGG | 3 cut(s) | 21, 236, 567 |
| Bse3DI | GCAATG | 2 cut(s) | 388, 837 |
| BseAI | TCCGGA | 1 cut(s) | 770 |
| BseBI | CCWGG | 1 cut(s) | 594 |
| BseDI | CCNNGG | 1 cut(s) | 224 |
| BseGI | GGATG | 5 cut(s) | 298, 304, 754, 829, 1007 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 55, 94, 174, 231, 255, 784, 809 |
| BseMI | GCAATG | 2 cut(s) | 388, 837 |
| BseMII | CTCAG | 4 cut(s) | 95, 139, 713, 926 |
| BseNI | ACTGG | 3 cut(s) | 21, 236, 567 |
| BseSI | GKGCMC | 1 cut(s) | 76 |
| BseXI | GCAGC | 4 cut(s) | 46, 457, 541, 682 |
| BsgI | GTGCAG | 1 cut(s) | 986 |
| Bsh1285I | CGRYCG | 2 cut(s) | 145, 249 |
| BshFI | GGCC | 1 cut(s) | 59 |
| BshNI | GGYRCC | 1 cut(s) | 73 |
| BsiEI | CGRYCG | 2 cut(s) | 145, 249 |
| BsiHKAI | GWGCWC | 2 cut(s) | 126, 817 |
| BsiHKCI | CYCGRG | 2 cut(s) | 100, 117 |
| BsiSI | CCGG | 6 cut(s) | 88, 175, 200, 218, 226, 771 |
| BslFI | GGGAC | 3 cut(s) | 110, 224, 549 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 55, 94, 174, 231, 255, 784, 809 |
| BsmAI | GTCTC | 2 cut(s) | 26, 768 |
| BsmFI | GGGAC | 3 cut(s) | 110, 224, 549 |
| BsmI | GAATGC | 4 cut(s) | 247, 622, 850, 971 |
| BsnI | GGCC | 1 cut(s) | 59 |
| Bso31I | GGTCTC | 2 cut(s) | 26, 768 |
| BsoBI | CYCGRG | 2 cut(s) | 100, 117 |
| Bsp119I | TTCGAA | 1 cut(s) | 955 |
| Bsp1286I | GDGCHC | 5 cut(s) | 76, 126, 225, 689, 817 |
| Bsp13I | TCCGGA | 1 cut(s) | 770 |
| Bsp1407I | TGTACA | 1 cut(s) | 186 |
| Bsp143I | GATC | 5 cut(s) | 142, 275, 482, 583, 799 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 125 |
| BspANI | GGCC | 1 cut(s) | 59 |
| BspCNI | CTCAG | 4 cut(s) | 94, 138, 712, 925 |
| BspEI | TCCGGA | 1 cut(s) | 770 |
| BspHI | TCATGA | 1 cut(s) | 580 |
| BspLI | GGNNCC | 5 cut(s) | 75, 105, 212, 213, 222 |
| BspMI | ACCTGC | 1 cut(s) | 597 |
| BspPI | GGATC | 3 cut(s) | 283, 490, 794 |
| BspT104I | TTCGAA | 1 cut(s) | 955 |
| BspT107I | GGYRCC | 1 cut(s) | 73 |
| BspTNI | GGTCTC | 2 cut(s) | 26, 768 |
| BsrBI | CCGCTC | 2 cut(s) | 205, 267 |
| BsrDI | GCAATG | 2 cut(s) | 388, 837 |
| BsrGI | TGTACA | 1 cut(s) | 186 |
| BsrI | ACTGG | 3 cut(s) | 21, 236, 567 |
| BssECI | CCNNGG | 1 cut(s) | 224 |
| BssMI | GATC | 5 cut(s) | 142, 275, 482, 583, 799 |
| BssNI | GRCGYC | 2 cut(s) | 260, 342 |
| Bst2UI | CCWGG | 1 cut(s) | 594 |
| Bst4CI | ACNGT | 1 cut(s) | 628 |
| Bst6I | CTCTTC | 2 cut(s) | 957, 981 |
| BstACI | GRCGYC | 2 cut(s) | 260, 342 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 670 |
| BstAUI | TGTACA | 1 cut(s) | 186 |
| BstBI | TTCGAA | 1 cut(s) | 955 |
| BstC8I | GCNNGC | 2 cut(s) | 898, 969 |
| BstDEI | CTNAG | 4 cut(s) | 81, 125, 699, 912 |
| BstF5I | GGATG | 5 cut(s) | 298, 304, 754, 829, 1007 |
| BstH2I | RGCGCY | 1 cut(s) | 88 |
| BstHHI | GCGC | 1 cut(s) | 87 |
| BstKTI | GATC | 5 cut(s) | 145, 278, 485, 586, 802 |
| BstMAI | GTCTC | 2 cut(s) | 26, 768 |
| BstMBI | GATC | 5 cut(s) | 142, 275, 482, 583, 799 |
| BstMCI | CGRYCG | 2 cut(s) | 145, 249 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 214, 445, 670, 847, 968 |
| BstNI | CCWGG | 1 cut(s) | 594 |
| BstNSI | RCATGY | 2 cut(s) | 655, 909 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 102 |
| BstSCI | CCNGG | 4 cut(s) | 87, 198, 224, 592 |
| BstSLI | GKGCMC | 1 cut(s) | 76 |
| BstV1I | GCAGC | 4 cut(s) | 46, 457, 541, 682 |
| BstV2I | GAAGAC | 3 cut(s) | 34, 119, 933 |
| BsuRI | GGCC | 1 cut(s) | 59 |
| BtgZI | GCGATG | 1 cut(s) | 986 |
| BtrI | CACGTC | 1 cut(s) | 316 |
| BtsCI | GGATG | 5 cut(s) | 298, 304, 754, 829, 1007 |
| BtsIMutI | CAGTG | 1 cut(s) | 536 |
| BveI | ACCTGC | 1 cut(s) | 597 |
| Cac8I | GCNNGC | 2 cut(s) | 898, 969 |
| CaiI | CAGNNNCTG | 1 cut(s) | 538 |
| CciI | TCATGA | 1 cut(s) | 580 |
| CfoI | GCGC | 1 cut(s) | 87 |
| Cfr13I | GGNCC | 2 cut(s) | 104, 211 |
| CseI | GACGC | 1 cut(s) | 268 |
| Csp6I | GTAC | 2 cut(s) | 187, 872 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 609, 644 |
| CviAII | CATG | 3 cut(s) | 581, 652, 906 |
| CviQI | GTAC | 2 cut(s) | 187, 872 |
| DdeI | CTNAG | 4 cut(s) | 81, 125, 699, 912 |
| DpnI | GATC | 5 cut(s) | 144, 277, 484, 585, 801 |
| DpnII | GATC | 5 cut(s) | 142, 275, 482, 583, 799 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 341 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 341 |
| Eam1104I | CTCTTC | 2 cut(s) | 957, 981 |
| EarI | CTCTTC | 2 cut(s) | 957, 981 |
| Ecl136II | GAGCTC | 2 cut(s) | 124, 815 |
| Eco147I | AGGCCT | 1 cut(s) | 59 |
| Eco24I | GRGCYC | 4 cut(s) | 126, 225, 689, 817 |
| Eco31I | GGTCTC | 2 cut(s) | 26, 768 |
| Eco47I | GGWCC | 2 cut(s) | 104, 211 |
| Eco53kI | GAGCTC | 2 cut(s) | 124, 815 |
| Eco88I | CYCGRG | 2 cut(s) | 100, 117 |
| EcoICRI | GAGCTC | 2 cut(s) | 124, 815 |
| EcoO109I | RGGNCCY | 1 cut(s) | 211 |
| EcoRII | CCWGG | 1 cut(s) | 592 |
| EcoT38I | GRGCYC | 4 cut(s) | 126, 225, 689, 817 |
| FaeI | CATG | 3 cut(s) | 584, 655, 909 |
| FaiI | YATR | 5 cut(s) | 513, 582, 653, 907, 1043 |
| FaqI | GGGAC | 3 cut(s) | 110, 224, 549 |
| FatI | CATG | 3 cut(s) | 580, 651, 905 |
| FauI | CCCGC | 5 cut(s) | 162, 171, 201, 222, 260 |
| FbaI | TGATCA | 1 cut(s) | 583 |
| Fnu4HI | GCNGC | 8 cut(s) | 32, 35, 130, 158, 206, 446, 530, 696 |
| FokI | GGATG | 5 cut(s) | 305, 311, 761, 836, 994 |
| FriOI | GRGCYC | 4 cut(s) | 126, 225, 689, 817 |
| Fsp4HI | GCNGC | 8 cut(s) | 32, 35, 130, 158, 206, 446, 530, 696 |
| GlaI | GCGC | 1 cut(s) | 86 |
| GluI | GCNGC | 8 cut(s) | 32, 35, 130, 158, 206, 446, 530, 696 |
| HaeII | RGCGCY | 1 cut(s) | 88 |
| HaeIII | GGCC | 1 cut(s) | 59 |
| HapII | CCGG | 6 cut(s) | 88, 175, 200, 218, 226, 771 |
| HgaI | GACGC | 1 cut(s) | 268 |
| HhaI | GCGC | 1 cut(s) | 87 |
| Hin1I | GRCGYC | 2 cut(s) | 260, 342 |
| Hin1II | CATG | 3 cut(s) | 584, 655, 909 |
| Hin6I | GCGC | 1 cut(s) | 85 |
| HinP1I | GCGC | 1 cut(s) | 85 |
| HindIII | AAGCTT | 1 cut(s) | 894 |
| HinfI | GANTC | 5 cut(s) | 98, 235, 635, 767, 929 |
| HpaII | CCGG | 6 cut(s) | 88, 175, 200, 218, 226, 771 |
| HphI | GGTGA | 1 cut(s) | 578 |
| Hpy188III | TCNNGA | 3 cut(s) | 581, 771, 980 |
| Hpy99I | CGWCG | 9 cut(s) | 112, 143, 287, 308, 311, 329, 344, 347, 981 |
| HpyAV | CCTTC | 3 cut(s) | 266, 591, 697 |
| HpyCH4III | ACNGT | 1 cut(s) | 628 |
| HpyCH4IV | ACGT | 2 cut(s) | 315, 342 |
| HpyCH4V | TGCA | 4 cut(s) | 620, 673, 830, 967 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 214, 445, 670, 847, 968 |
| HpyF3I | CTNAG | 4 cut(s) | 81, 125, 699, 912 |
| HpySE526I | ACGT | 2 cut(s) | 315, 342 |
| Hsp92I | GRCGYC | 2 cut(s) | 260, 342 |
| Hsp92II | CATG | 3 cut(s) | 584, 655, 909 |
| HspAI | GCGC | 1 cut(s) | 85 |
| KflI | GGGWCCC | 1 cut(s) | 211 |
| Kpn2I | TCCGGA | 1 cut(s) | 770 |
| Ksp22I | TGATCA | 1 cut(s) | 583 |
| Kzo9I | GATC | 5 cut(s) | 142, 275, 482, 583, 799 |
| LmnI | GCTCC | 6 cut(s) | 202, 220, 372, 453, 812, 943 |
| Lsp1109I | GCAGC | 4 cut(s) | 46, 457, 541, 682 |
| LweI | GCATC | 3 cut(s) | 561, 739, 817 |
| MaeII | ACGT | 2 cut(s) | 315, 342 |
| MaeIII | GTNAC | 2 cut(s) | 805, 990 |
| MalI | GATC | 5 cut(s) | 144, 277, 484, 585, 801 |
| MbiI | CCGCTC | 2 cut(s) | 205, 267 |
| MboI | GATC | 5 cut(s) | 142, 275, 482, 583, 799 |
| MfeI | CAATTG | 1 cut(s) | 933 |
| MhlI | GDGCHC | 5 cut(s) | 76, 126, 225, 689, 817 |
| MluCI | AATT | 3 cut(s) | 789, 918, 933 |
| MlyI | GAGTC | 3 cut(s) | 92, 776, 923 |
| MmeI | TCCRAC | 3 cut(s) | 131, 325, 480 |
| MroI | TCCGGA | 1 cut(s) | 770 |
| MseI | TTAA | 1 cut(s) | 435 |
| MspA1I | CMGCKG | 2 cut(s) | 37, 129 |
| MspI | CCGG | 6 cut(s) | 88, 175, 200, 218, 226, 771 |
| MspR9I | CCNGG | 4 cut(s) | 89, 200, 226, 594 |
| MunI | CAATTG | 1 cut(s) | 933 |
| Mva1269I | GAATGC | 4 cut(s) | 247, 622, 850, 971 |
| MvaI | CCWGG | 1 cut(s) | 594 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 214, 445, 670, 847, 968 |
| NciI | CCSGG | 3 cut(s) | 89, 200, 226 |
| NdeII | GATC | 5 cut(s) | 142, 275, 482, 583, 799 |
| NlaIII | CATG | 3 cut(s) | 584, 655, 909 |
| NlaIV | GGNNCC | 5 cut(s) | 75, 105, 212, 213, 222 |
| NmeAIII | GCCGAG | 1 cut(s) | 288 |
| NmuCI | GTSAC | 1 cut(s) | 805 |
| NspI | RCATGY | 2 cut(s) | 655, 909 |
| NspV | TTCGAA | 1 cut(s) | 955 |
| PagI | TCATGA | 1 cut(s) | 580 |
| PaqCI | CACCTGC | 1 cut(s) | 597 |
| PceI | AGGCCT | 1 cut(s) | 59 |
| PciI | ACATGT | 2 cut(s) | 651, 905 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 107, 312, 321 |
| PctI | GAATGC | 4 cut(s) | 247, 622, 850, 971 |
| PfeI | GAWTC | 2 cut(s) | 235, 635 |
| PkrI | GCNGC | 8 cut(s) | 33, 36, 131, 159, 207, 447, 531, 697 |
| Ple19I | CGATCG | 1 cut(s) | 145 |
| PleI | GAGTC | 3 cut(s) | 92, 775, 923 |
| PpsI | GAGTC | 3 cut(s) | 92, 775, 923 |
| PpuMI | RGGWCCY | 1 cut(s) | 211 |
| PscI | ACATGT | 2 cut(s) | 651, 905 |
| PshAI | GACNNNNGTC | 1 cut(s) | 102 |
| Psp124BI | GAGCTC | 2 cut(s) | 126, 817 |
| Psp5II | RGGWCCY | 1 cut(s) | 211 |
| Psp6I | CCWGG | 1 cut(s) | 592 |
| PspGI | CCWGG | 1 cut(s) | 592 |
| PspN4I | GGNNCC | 5 cut(s) | 75, 105, 212, 213, 222 |
| PspPI | GGNCC | 2 cut(s) | 104, 211 |
| PspPPI | RGGWCCY | 1 cut(s) | 211 |
| PstNI | CAGNNNCTG | 1 cut(s) | 538 |
| PvuI | CGATCG | 1 cut(s) | 145 |
| PvuII | CAGCTG | 1 cut(s) | 37 |
| RsaI | GTAC | 2 cut(s) | 188, 873 |
| RsaNI | GTAC | 2 cut(s) | 187, 872 |
| SacI | GAGCTC | 2 cut(s) | 126, 817 |
| SaqAI | TTAA | 1 cut(s) | 435 |
| SatI | GCNGC | 8 cut(s) | 32, 35, 130, 158, 206, 446, 530, 696 |
| Sau3AI | GATC | 5 cut(s) | 142, 275, 482, 583, 799 |
| Sau96I | GGNCC | 2 cut(s) | 104, 211 |
| SchI | GAGTC | 3 cut(s) | 92, 776, 923 |
| ScrFI | CCNGG | 4 cut(s) | 89, 200, 226, 594 |
| SduI | GDGCHC | 5 cut(s) | 76, 126, 225, 689, 817 |
| SetI | ASST | 9 cut(s) | 39, 126, 318, 345, 450, 498, 591, 817, 898 |
| SfaNI | GCATC | 3 cut(s) | 561, 739, 817 |
| SfuI | TTCGAA | 1 cut(s) | 955 |
| SinI | GGWCC | 2 cut(s) | 104, 211 |
| Sse9I | AATT | 3 cut(s) | 789, 918, 933 |
| SseBI | AGGCCT | 1 cut(s) | 59 |
| SstI | GAGCTC | 2 cut(s) | 126, 817 |
| StuI | AGGCCT | 1 cut(s) | 59 |
| StyD4I | CCNGG | 4 cut(s) | 87, 198, 224, 592 |
| TaaI | ACNGT | 1 cut(s) | 628 |
| TaiI | ACGT | 2 cut(s) | 318, 345 |
| TaqI | TCGA | 2 cut(s) | 138, 955 |
| TasI | AATT | 3 cut(s) | 789, 918, 933 |
| TatI | WGTACW | 2 cut(s) | 186, 871 |
| TauI | GCSGC | 4 cut(s) | 34, 132, 160, 208 |
| TfiI | GAWTC | 2 cut(s) | 235, 635 |
| Tru1I | TTAA | 1 cut(s) | 435 |
| Tru9I | TTAA | 1 cut(s) | 435 |
| TscAI | CASTG | 1 cut(s) | 543 |
| TseFI | GTSAC | 1 cut(s) | 805 |
| TseI | GCWGC | 4 cut(s) | 34, 445, 529, 695 |
| Tsp45I | GTSAC | 1 cut(s) | 805 |
| TspDTI | ATGAA | 4 cut(s) | 124, 843, 905, 989 |
| TspGWI | ACGGA | 1 cut(s) | 965 |
| TspRI | CASTG | 1 cut(s) | 543 |
| VpaK11BI | GGWCC | 2 cut(s) | 104, 211 |
| XceI | RCATGY | 2 cut(s) | 655, 909 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 458 |
| ZraI | GACGTC | 1 cut(s) | 343 |