Rorug01G0407600

Mur ligase family, catalytic domain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
51394267 .. 51397599
3333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0407600.1

Sequence Viewer

Length: 1053 bp
ATGTCCTCCGAAGAACTGGGTCTCAACTCGCCGCAGCTGGTCTTCCACCAAGACGAGGCCTTGCGGTTCGGGGCACCGCCTCAGCGCCGGGTCGGGGACTCGGGTCCGACGAAGACCCGAGAGCTCAGCGGCTTCATCGACGATCGGTTCTTCCCGCCGCAAAACGCCGACTTCCGGCGGGGATTGTACAGCGAGAACCCGGAGCGGCGGGACCCGCCGGAGCCCCGGAACTGGAATCCGAATGCGACCGCCGTGAGGACGCCGAGCGGGGAAGGATCGGACGACGATGAGGATGAGGATGACGACGACGATGACGTGGAGGACGACGATGATGACGGCGACGTCGGAGGGTTGTTCGGAGTGGAGAATAGGAGCAAGGGCAATGGTGGTAATAATGTGAGTAATGGCGAGGACAAAATGGGAAATGGGAATGTTAAGCACCAGCAGCTCCATTCTTCTTTTGGTGGGGCTTTGATATTAGGATCAAGTAGGGAGGTGTTGGAGAAAGACCATAGTGTTAGTGTAGGGCAGCAGACACTGAATAACAACAGCATCAGGGATAGTCCCAGTAATAATCATCATGATCACCTGCCAGGAAGGGTTGGGAGTTATCAGAATGCAATCACGGTGGCTGAATCATCGGACGGCGACATGTATTACTCGCAGTATTTGCAGGGGTCAGAGGGCTCTGGTGCTGCTCAGAAGGATTTGGTTGTGGAAAATGGTTGTGGGTTTAGTGGAAGAAAGGATGCTTTGTGTTCAAGTGAGTCCGGAGACCCTTTGAGGGCAATTCTCTCTGATCCTGTGACGGGAGCTCTGATGGATGATGCAATGATATTGCCTTGTGGGCATTCATTTGGAGGCGGTGGAGTACAGCAAGTTATTAGAATGAAAGCTTGCTTCACATGTTCTCAGTCAATTTCAGAAGACTCAATTGCTCCAAATCTTTCTCTTCGAAGTGCTGTGCAGGCATTCCGTCGTGAAGAAGAGTTACACTTTCATCGCTCATCCAAAAGGAAAAGAGAAAGGACAAGGGTGGTTATGGTGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

350

Amino Acids

38.07

Weight (kDa)

4.76

Isoelectric Point (pI)

56.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 597
AasI GACNNNNNNGTC 1 cut(s) 341
AatII GACGTC 1 cut(s) 345
Acc36I ACCTGC 1 cut(s) 597
AccB1I GGYRCC 1 cut(s) 73
AccBSI CCGCTC 2 cut(s) 205, 267
AccIII TCCGGA 1 cut(s) 770
AclWI GGATC 3 cut(s) 283, 490, 794
AcyI GRCGYC 2 cut(s) 260, 342
AfaI GTAC 2 cut(s) 188, 873
AfiI CCNNNNNNNGG 7 cut(s) 55, 94, 174, 231, 255, 784, 809
AflIII ACRYGT 2 cut(s) 651, 905
AgsI TTSAA 1 cut(s) 762
AjiI CACGTC 1 cut(s) 316
AjnI CCWGG 1 cut(s) 592
AluBI AGCT 5 cut(s) 37, 124, 448, 815, 896
AluI AGCT 5 cut(s) 37, 124, 448, 815, 896
Alw21I GWGCWC 2 cut(s) 126, 817
Alw26I GTCTC 2 cut(s) 26, 768
AlwI GGATC 3 cut(s) 283, 490, 794
AlwNI CAGNNNCTG 1 cut(s) 538
Ama87I CYCGRG 2 cut(s) 100, 117
Aor13HI TCCGGA 1 cut(s) 770
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 4 cut(s) 34, 445, 529, 695
AspLEI GCGC 1 cut(s) 87
AspS9I GGNCC 2 cut(s) 104, 211
AsuC2I CCSGG 3 cut(s) 89, 200, 226
AsuHPI GGTGA 1 cut(s) 578
AsuII TTCGAA 1 cut(s) 955
AvaI CYCGRG 2 cut(s) 100, 117
AvaII GGWCC 2 cut(s) 104, 211
BaeGI GKGCMC 1 cut(s) 76
BanI GGYRCC 1 cut(s) 73
BanII GRGCYC 4 cut(s) 126, 225, 689, 817
BarI GAAGNNNNNNTAC 2 cut(s) 975, 1007
BbsI GAAGAC 3 cut(s) 34, 119, 933
Bbv12I GWGCWC 2 cut(s) 126, 817
BbvCI CCTCAGC 1 cut(s) 81
BbvI GCAGC 4 cut(s) 46, 457, 541, 682
BccI CCATC 1 cut(s) 814
BceAI ACGGC 3 cut(s) 236, 352, 661
BciT130I CCWGG 1 cut(s) 594
BclI TGATCA 1 cut(s) 583
BcnI CCSGG 3 cut(s) 89, 200, 226
BcoDI GTCTC 2 cut(s) 26, 768
BfoI RGCGCY 1 cut(s) 88
BfuAI ACCTGC 1 cut(s) 597
BglI GCCNNNNNGGC 1 cut(s) 847
BisI GCNGC 8 cut(s) 32, 35, 130, 158, 206, 446, 530, 696
BlpI GCTNAGC 1 cut(s) 125
BlsI GCNGC 8 cut(s) 33, 36, 131, 159, 207, 447, 531, 697
Bme1390I CCNGG 4 cut(s) 89, 200, 226, 594
Bme18I GGWCC 2 cut(s) 104, 211
BmeT110I CYCGRG 2 cut(s) 100, 117
BmgBI CACGTC 1 cut(s) 316
BmgT120I GGNCC 2 cut(s) 104, 211
BmiI GGNNCC 5 cut(s) 75, 105, 212, 213, 222
BmrFI CCNGG 4 cut(s) 89, 200, 226, 594
BmrI ACTGGG 2 cut(s) 26, 561
BmsI GCATC 3 cut(s) 561, 739, 817
BmuI ACTGGG 2 cut(s) 26, 561
BoxI GACNNNNGTC 1 cut(s) 102
BpiI GAAGAC 3 cut(s) 34, 119, 933
Bpu10I CCTNAGC 1 cut(s) 81
Bpu1102I GCTNAGC 1 cut(s) 125
Bpu14I TTCGAA 1 cut(s) 955
BpuMI CCSGG 3 cut(s) 89, 200, 226
BsaHI GRCGYC 2 cut(s) 260, 342
BsaI GGTCTC 2 cut(s) 26, 768
BsaJI CCNNGG 1 cut(s) 224
BsaWI WCCGGW 1 cut(s) 770
Bsc4I CCNNNNNNNGG 7 cut(s) 55, 94, 174, 231, 255, 784, 809
Bse1I ACTGG 3 cut(s) 21, 236, 567
Bse3DI GCAATG 2 cut(s) 388, 837
BseAI TCCGGA 1 cut(s) 770
BseBI CCWGG 1 cut(s) 594
BseDI CCNNGG 1 cut(s) 224
BseGI GGATG 5 cut(s) 298, 304, 754, 829, 1007
BseLI CCNNNNNNNGG 7 cut(s) 55, 94, 174, 231, 255, 784, 809
BseMI GCAATG 2 cut(s) 388, 837
BseMII CTCAG 4 cut(s) 95, 139, 713, 926
BseNI ACTGG 3 cut(s) 21, 236, 567
BseSI GKGCMC 1 cut(s) 76
BseXI GCAGC 4 cut(s) 46, 457, 541, 682
BsgI GTGCAG 1 cut(s) 986
Bsh1285I CGRYCG 2 cut(s) 145, 249
BshFI GGCC 1 cut(s) 59
BshNI GGYRCC 1 cut(s) 73
BsiEI CGRYCG 2 cut(s) 145, 249
BsiHKAI GWGCWC 2 cut(s) 126, 817
BsiHKCI CYCGRG 2 cut(s) 100, 117
BsiSI CCGG 6 cut(s) 88, 175, 200, 218, 226, 771
BslFI GGGAC 3 cut(s) 110, 224, 549
BslI CCNNNNNNNGG 7 cut(s) 55, 94, 174, 231, 255, 784, 809
BsmAI GTCTC 2 cut(s) 26, 768
BsmFI GGGAC 3 cut(s) 110, 224, 549
BsmI GAATGC 4 cut(s) 247, 622, 850, 971
BsnI GGCC 1 cut(s) 59
Bso31I GGTCTC 2 cut(s) 26, 768
BsoBI CYCGRG 2 cut(s) 100, 117
Bsp119I TTCGAA 1 cut(s) 955
Bsp1286I GDGCHC 5 cut(s) 76, 126, 225, 689, 817
Bsp13I TCCGGA 1 cut(s) 770
Bsp1407I TGTACA 1 cut(s) 186
Bsp143I GATC 5 cut(s) 142, 275, 482, 583, 799
Bsp1720I GCTNAGC 1 cut(s) 125
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 4 cut(s) 94, 138, 712, 925
BspEI TCCGGA 1 cut(s) 770
BspHI TCATGA 1 cut(s) 580
BspLI GGNNCC 5 cut(s) 75, 105, 212, 213, 222
BspMI ACCTGC 1 cut(s) 597
BspPI GGATC 3 cut(s) 283, 490, 794
BspT104I TTCGAA 1 cut(s) 955
BspT107I GGYRCC 1 cut(s) 73
BspTNI GGTCTC 2 cut(s) 26, 768
BsrBI CCGCTC 2 cut(s) 205, 267
BsrDI GCAATG 2 cut(s) 388, 837
BsrGI TGTACA 1 cut(s) 186
BsrI ACTGG 3 cut(s) 21, 236, 567
BssECI CCNNGG 1 cut(s) 224
BssMI GATC 5 cut(s) 142, 275, 482, 583, 799
BssNI GRCGYC 2 cut(s) 260, 342
Bst2UI CCWGG 1 cut(s) 594
Bst4CI ACNGT 1 cut(s) 628
Bst6I CTCTTC 2 cut(s) 957, 981
BstACI GRCGYC 2 cut(s) 260, 342
BstAPI GCANNNNNTGC 1 cut(s) 670
BstAUI TGTACA 1 cut(s) 186
BstBI TTCGAA 1 cut(s) 955
BstC8I GCNNGC 2 cut(s) 898, 969
BstDEI CTNAG 4 cut(s) 81, 125, 699, 912
BstF5I GGATG 5 cut(s) 298, 304, 754, 829, 1007
BstH2I RGCGCY 1 cut(s) 88
BstHHI GCGC 1 cut(s) 87
BstKTI GATC 5 cut(s) 145, 278, 485, 586, 802
BstMAI GTCTC 2 cut(s) 26, 768
BstMBI GATC 5 cut(s) 142, 275, 482, 583, 799
BstMCI CGRYCG 2 cut(s) 145, 249
BstMWI GCNNNNNNNGC 5 cut(s) 214, 445, 670, 847, 968
BstNI CCWGG 1 cut(s) 594
BstNSI RCATGY 2 cut(s) 655, 909
BstPAI GACNNNNGTC 1 cut(s) 102
BstSCI CCNGG 4 cut(s) 87, 198, 224, 592
BstSLI GKGCMC 1 cut(s) 76
BstV1I GCAGC 4 cut(s) 46, 457, 541, 682
BstV2I GAAGAC 3 cut(s) 34, 119, 933
BsuRI GGCC 1 cut(s) 59
BtgZI GCGATG 1 cut(s) 986
BtrI CACGTC 1 cut(s) 316
BtsCI GGATG 5 cut(s) 298, 304, 754, 829, 1007
BtsIMutI CAGTG 1 cut(s) 536
BveI ACCTGC 1 cut(s) 597
Cac8I GCNNGC 2 cut(s) 898, 969
CaiI CAGNNNCTG 1 cut(s) 538
CciI TCATGA 1 cut(s) 580
CfoI GCGC 1 cut(s) 87
Cfr13I GGNCC 2 cut(s) 104, 211
CseI GACGC 1 cut(s) 268
Csp6I GTAC 2 cut(s) 187, 872
CspCI CAANNNNNGTGG 2 cut(s) 609, 644
CviAII CATG 3 cut(s) 581, 652, 906
CviQI GTAC 2 cut(s) 187, 872
DdeI CTNAG 4 cut(s) 81, 125, 699, 912
DpnI GATC 5 cut(s) 144, 277, 484, 585, 801
DpnII GATC 5 cut(s) 142, 275, 482, 583, 799
DrdI GACNNNNNNGTC 1 cut(s) 341
DseDI GACNNNNNNGTC 1 cut(s) 341
Eam1104I CTCTTC 2 cut(s) 957, 981
EarI CTCTTC 2 cut(s) 957, 981
Ecl136II GAGCTC 2 cut(s) 124, 815
Eco147I AGGCCT 1 cut(s) 59
Eco24I GRGCYC 4 cut(s) 126, 225, 689, 817
Eco31I GGTCTC 2 cut(s) 26, 768
Eco47I GGWCC 2 cut(s) 104, 211
Eco53kI GAGCTC 2 cut(s) 124, 815
Eco88I CYCGRG 2 cut(s) 100, 117
EcoICRI GAGCTC 2 cut(s) 124, 815
EcoO109I RGGNCCY 1 cut(s) 211
EcoRII CCWGG 1 cut(s) 592
EcoT38I GRGCYC 4 cut(s) 126, 225, 689, 817
FaeI CATG 3 cut(s) 584, 655, 909
FaiI YATR 5 cut(s) 513, 582, 653, 907, 1043
FaqI GGGAC 3 cut(s) 110, 224, 549
FatI CATG 3 cut(s) 580, 651, 905
FauI CCCGC 5 cut(s) 162, 171, 201, 222, 260
FbaI TGATCA 1 cut(s) 583
Fnu4HI GCNGC 8 cut(s) 32, 35, 130, 158, 206, 446, 530, 696
FokI GGATG 5 cut(s) 305, 311, 761, 836, 994
FriOI GRGCYC 4 cut(s) 126, 225, 689, 817
Fsp4HI GCNGC 8 cut(s) 32, 35, 130, 158, 206, 446, 530, 696
GlaI GCGC 1 cut(s) 86
GluI GCNGC 8 cut(s) 32, 35, 130, 158, 206, 446, 530, 696
HaeII RGCGCY 1 cut(s) 88
HaeIII GGCC 1 cut(s) 59
HapII CCGG 6 cut(s) 88, 175, 200, 218, 226, 771
HgaI GACGC 1 cut(s) 268
HhaI GCGC 1 cut(s) 87
Hin1I GRCGYC 2 cut(s) 260, 342
Hin1II CATG 3 cut(s) 584, 655, 909
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 894
HinfI GANTC 5 cut(s) 98, 235, 635, 767, 929
HpaII CCGG 6 cut(s) 88, 175, 200, 218, 226, 771
HphI GGTGA 1 cut(s) 578
Hpy188III TCNNGA 3 cut(s) 581, 771, 980
Hpy99I CGWCG 9 cut(s) 112, 143, 287, 308, 311, 329, 344, 347, 981
HpyAV CCTTC 3 cut(s) 266, 591, 697
HpyCH4III ACNGT 1 cut(s) 628
HpyCH4IV ACGT 2 cut(s) 315, 342
HpyCH4V TGCA 4 cut(s) 620, 673, 830, 967
HpyF10VI GCNNNNNNNGC 5 cut(s) 214, 445, 670, 847, 968
HpyF3I CTNAG 4 cut(s) 81, 125, 699, 912
HpySE526I ACGT 2 cut(s) 315, 342
Hsp92I GRCGYC 2 cut(s) 260, 342
Hsp92II CATG 3 cut(s) 584, 655, 909
HspAI GCGC 1 cut(s) 85
KflI GGGWCCC 1 cut(s) 211
Kpn2I TCCGGA 1 cut(s) 770
Ksp22I TGATCA 1 cut(s) 583
Kzo9I GATC 5 cut(s) 142, 275, 482, 583, 799
LmnI GCTCC 6 cut(s) 202, 220, 372, 453, 812, 943
Lsp1109I GCAGC 4 cut(s) 46, 457, 541, 682
LweI GCATC 3 cut(s) 561, 739, 817
MaeII ACGT 2 cut(s) 315, 342
MaeIII GTNAC 2 cut(s) 805, 990
MalI GATC 5 cut(s) 144, 277, 484, 585, 801
MbiI CCGCTC 2 cut(s) 205, 267
MboI GATC 5 cut(s) 142, 275, 482, 583, 799
MfeI CAATTG 1 cut(s) 933
MhlI GDGCHC 5 cut(s) 76, 126, 225, 689, 817
MluCI AATT 3 cut(s) 789, 918, 933
MlyI GAGTC 3 cut(s) 92, 776, 923
MmeI TCCRAC 3 cut(s) 131, 325, 480
MroI TCCGGA 1 cut(s) 770
MseI TTAA 1 cut(s) 435
MspA1I CMGCKG 2 cut(s) 37, 129
MspI CCGG 6 cut(s) 88, 175, 200, 218, 226, 771
MspR9I CCNGG 4 cut(s) 89, 200, 226, 594
MunI CAATTG 1 cut(s) 933
Mva1269I GAATGC 4 cut(s) 247, 622, 850, 971
MvaI CCWGG 1 cut(s) 594
MwoI GCNNNNNNNGC 5 cut(s) 214, 445, 670, 847, 968
NciI CCSGG 3 cut(s) 89, 200, 226
NdeII GATC 5 cut(s) 142, 275, 482, 583, 799
NlaIII CATG 3 cut(s) 584, 655, 909
NlaIV GGNNCC 5 cut(s) 75, 105, 212, 213, 222
NmeAIII GCCGAG 1 cut(s) 288
NmuCI GTSAC 1 cut(s) 805
NspI RCATGY 2 cut(s) 655, 909
NspV TTCGAA 1 cut(s) 955
PagI TCATGA 1 cut(s) 580
PaqCI CACCTGC 1 cut(s) 597
PceI AGGCCT 1 cut(s) 59
PciI ACATGT 2 cut(s) 651, 905
PcsI WCGNNNNNNNCGW 3 cut(s) 107, 312, 321
PctI GAATGC 4 cut(s) 247, 622, 850, 971
PfeI GAWTC 2 cut(s) 235, 635
PkrI GCNGC 8 cut(s) 33, 36, 131, 159, 207, 447, 531, 697
Ple19I CGATCG 1 cut(s) 145
PleI GAGTC 3 cut(s) 92, 775, 923
PpsI GAGTC 3 cut(s) 92, 775, 923
PpuMI RGGWCCY 1 cut(s) 211
PscI ACATGT 2 cut(s) 651, 905
PshAI GACNNNNGTC 1 cut(s) 102
Psp124BI GAGCTC 2 cut(s) 126, 817
Psp5II RGGWCCY 1 cut(s) 211
Psp6I CCWGG 1 cut(s) 592
PspGI CCWGG 1 cut(s) 592
PspN4I GGNNCC 5 cut(s) 75, 105, 212, 213, 222
PspPI GGNCC 2 cut(s) 104, 211
PspPPI RGGWCCY 1 cut(s) 211
PstNI CAGNNNCTG 1 cut(s) 538
PvuI CGATCG 1 cut(s) 145
PvuII CAGCTG 1 cut(s) 37
RsaI GTAC 2 cut(s) 188, 873
RsaNI GTAC 2 cut(s) 187, 872
SacI GAGCTC 2 cut(s) 126, 817
SaqAI TTAA 1 cut(s) 435
SatI GCNGC 8 cut(s) 32, 35, 130, 158, 206, 446, 530, 696
Sau3AI GATC 5 cut(s) 142, 275, 482, 583, 799
Sau96I GGNCC 2 cut(s) 104, 211
SchI GAGTC 3 cut(s) 92, 776, 923
ScrFI CCNGG 4 cut(s) 89, 200, 226, 594
SduI GDGCHC 5 cut(s) 76, 126, 225, 689, 817
SetI ASST 9 cut(s) 39, 126, 318, 345, 450, 498, 591, 817, 898
SfaNI GCATC 3 cut(s) 561, 739, 817
SfuI TTCGAA 1 cut(s) 955
SinI GGWCC 2 cut(s) 104, 211
Sse9I AATT 3 cut(s) 789, 918, 933
SseBI AGGCCT 1 cut(s) 59
SstI GAGCTC 2 cut(s) 126, 817
StuI AGGCCT 1 cut(s) 59
StyD4I CCNGG 4 cut(s) 87, 198, 224, 592
TaaI ACNGT 1 cut(s) 628
TaiI ACGT 2 cut(s) 318, 345
TaqI TCGA 2 cut(s) 138, 955
TasI AATT 3 cut(s) 789, 918, 933
TatI WGTACW 2 cut(s) 186, 871
TauI GCSGC 4 cut(s) 34, 132, 160, 208
TfiI GAWTC 2 cut(s) 235, 635
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TscAI CASTG 1 cut(s) 543
TseFI GTSAC 1 cut(s) 805
TseI GCWGC 4 cut(s) 34, 445, 529, 695
Tsp45I GTSAC 1 cut(s) 805
TspDTI ATGAA 4 cut(s) 124, 843, 905, 989
TspGWI ACGGA 1 cut(s) 965
TspRI CASTG 1 cut(s) 543
VpaK11BI GGWCC 2 cut(s) 104, 211
XceI RCATGY 2 cut(s) 655, 909
XcmI CCANNNNNNNNNTGG 1 cut(s) 458
ZraI GACGTC 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.