MD01G1208200.v1.1

Mur ligase family, catalytic domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Reverse (-)
30283576 .. 30287711
4136 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1208200.v1.1.491

Sequence Viewer

Length: 1365 bp
ATGGCTGTGCAGGAAGCAGGGGCATTTTTGCATATAGGCCATTCGGTGATCAATTTGCAAAGGAACGGGGCCTCGAGATTACCTGATGCCATTGTTGTTTCAAGTGCTATTCCCCAAAACAATGCTGAGATTTTGTATGCAAAGTCCGTCGGAGTACCTGTGTACAAGCGAGACCAGTGGTTAGGAAAGCTGACAGAGAGCTATAATCTCATTGCTGTAAGCGGTAGCCATGGAAAGAGTACAACTGCAAGTATGCTTGCTTATGTTCTAGATGCCATGGGTGATAGTCTTACCGCAGTAGTTGGAGCACATGTGCCGCAGTTCTCAGGAGGAAACATTATCTTCGGTGATGGTCGTAATTTTGTCCTGGAGGCTGACGAATACGATTGCTGTTTCCTGGGATTATCACCTTCTATAGCCGTTGTAACAAATTTGGATTGGGAGCATGTTGACATATTTCCAAACGAGGAGGCGGTTAAAGCTACTTTCAGGAAATTCCTGAACCGTATCAGGGTCGGTGGACATCTCATTTTATGTGGGGACAGTCAAGGTGCATTTTCATTGCTGACTGATGGAAAGCGGGCAGGTGGATCCGATAACTGGAGATGTTCTGATAGCTACAACGTAACAACTTATGGAACCACAAGTTCTAATGAATGGCATGCATCATCGATCAGGCCAAATTTAAGGGGTGGTAGTGATTATACACTGTGTCATTGCGGGCACCCTGTGGCAGACATCAGTCTACAGATTCCAGGAGTTCATAACGTCCTTAATTCGTTGGCAGTTATTGCCACTGTGATGGCATTATTCAGTGACCAATTTCAAATCAACAATACAATCAATCTTGTGAGGTTGCACTTAAACAATTTCATAGGCATTTCAAGACGTTTTGAGATGATTGGCGCCGTATGCGGATGCCATATATATGACGATTATGCTCATCATCCAACAGAAGTTAGTGCAGTAATTCAAGCTGCACGCCAGAGGTTCCCTGTCAAGTCTCTTTTGGTCGTGTTCCAGCCTCATACTTACAGCCGTTTAACAGCACTGAAGGATGACTTCACCAATGCTCTCCGCGATGCAGATCAAGTCGTAGTCACAGAGGTGTATGCCGCTAGAGAGAAAGATGTCGAGAATGTTGGCGGAAGAGAGTTAGCTGCTACGATAATTGGCCCGCCATCTGAATACATCCCTTCTCTGGACGATGTTGTAGAGAAGTTAGCATCTCAAATATGCAAGAACCCTCGTCGGGAAATCGTTGTTTTAACACTTGGAGCAGGTAATATAACTACCGTCGGCCCAAAGCTGCTCTATGAATTGAGAAGGAGATTACAAGTGAATTCGCAGCTTGCTCCCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

455

Amino Acids

49.47

Weight (kDa)

6.24

Isoelectric Point (pI)

38.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mur_ligase PF01225 4 - 68 3.7e-07 Mur ligase family, catalytic domain
Mur_ligase_M PF08245 73 - 266 1.5e-18 Mur ligase middle domain
Mur_ligase_C PF02875 296 - 428 2.8e-17 Mur ligase, glutamate ligase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 575
Acc36I ACCTGC 2 cut(s) 575, 1271
AccB1I GGYRCC 2 cut(s) 723, 905
AccI GTMKAC 1 cut(s) 745
AccII CGCG 1 cut(s) 1080
AclWI GGATC 2 cut(s) 585, 598
AcsI RAATTY 4 cut(s) 430, 494, 682, 1342
AcuI CTGAAG 1 cut(s) 1073
AcyI GRCGYC 1 cut(s) 906
AdeI CACNNNGTG 1 cut(s) 730
AfaI GTAC 3 cut(s) 156, 164, 241
AfiI CCNNNNNNNGG 4 cut(s) 511, 600, 1201, 1252
AflIII ACRYGT 1 cut(s) 310
AgsI TTSAA 4 cut(s) 102, 827, 885, 974
AjnI CCWGG 3 cut(s) 366, 396, 754
AleI CACNNNNGTG 1 cut(s) 1106
AluBI AGCT 8 cut(s) 190, 201, 482, 618, 977, 1160, 1309, 1351
AluI AGCT 8 cut(s) 190, 201, 482, 618, 977, 1160, 1309, 1351
Alw21I GWGCWC 1 cut(s) 310
Alw26I GTCTC 2 cut(s) 165, 1008
AlwI GGATC 2 cut(s) 585, 598
Ama87I CYCGRG 1 cut(s) 73
AoxI GGCC 5 cut(s) 37, 69, 677, 1174, 1300
ApeKI GCWGC 4 cut(s) 977, 1160, 1309, 1348
ApoI RAATTY 4 cut(s) 430, 494, 682, 1342
AspLEI GCGC 1 cut(s) 908
AspS9I GGNCC 3 cut(s) 69, 1175, 1301
AsuHPI GGTGA 5 cut(s) 58, 293, 359, 399, 1057
AvaI CYCGRG 1 cut(s) 73
BaeGI GKGCMC 1 cut(s) 726
BamHI GGATCC 1 cut(s) 590
BanI GGYRCC 2 cut(s) 723, 905
Bbv12I GWGCWC 1 cut(s) 310
BbvI GCAGC 4 cut(s) 964, 1147, 1296, 1360
BccI CCATC 4 cut(s) 344, 566, 796, 1189
BceAI ACGGC 3 cut(s) 404, 893, 1023
BciT130I CCWGG 3 cut(s) 368, 398, 756
BclI TGATCA 1 cut(s) 48
BcoDI GTCTC 2 cut(s) 165, 1008
BfaI CTAG 2 cut(s) 269, 1119
BfmI CTRYAG 2 cut(s) 414, 746
BfoI RGCGCY 1 cut(s) 909
BfuAI ACCTGC 2 cut(s) 575, 1271
BisI GCNGC 6 cut(s) 317, 978, 1116, 1161, 1310, 1349
BlsI GCNGC 6 cut(s) 318, 979, 1117, 1162, 1311, 1350
Bme1390I CCNGG 3 cut(s) 368, 398, 756
BmeT110I CYCGRG 1 cut(s) 73
BmgT120I GGNCC 3 cut(s) 69, 1175, 1301
BmiI GGNNCC 6 cut(s) 70, 592, 640, 725, 907, 992
BmrFI CCNGG 3 cut(s) 368, 398, 756
BmsI GCATC 6 cut(s) 76, 262, 674, 908, 1072, 1235
BoxI GACNNNNGTC 1 cut(s) 741
BpmI CTGGAG 2 cut(s) 389, 622
Bsa29I ATCGAT 1 cut(s) 671
BsaBI GATNNNNATC 1 cut(s) 1086
BsaHI GRCGYC 1 cut(s) 906
BsaI GGTCTC 1 cut(s) 165
BsaJI CCNNGG 3 cut(s) 229, 276, 397
BsaXI ACNNNNNCTCC 4 cut(s) 144, 174, 297, 327
Bsc4I CCNNNNNNNGG 4 cut(s) 511, 600, 1201, 1252
Bse1I ACTGG 2 cut(s) 175, 605
Bse3DI GCAATG 3 cut(s) 210, 560, 715
Bse8I GATNNNNATC 1 cut(s) 1086
BseBI CCWGG 3 cut(s) 368, 398, 756
BseCI ATCGAT 1 cut(s) 671
BseDI CCNNGG 3 cut(s) 229, 276, 397
BseGI GGATG 4 cut(s) 923, 946, 1063, 1191
BseJI GATNNNNATC 1 cut(s) 1086
BseLI CCNNNNNNNGG 4 cut(s) 511, 600, 1201, 1252
BseMI GCAATG 3 cut(s) 210, 560, 715
BseMII CTCAG 2 cut(s) 117, 339
BseNI ACTGG 2 cut(s) 175, 605
BseRI GAGGAG 1 cut(s) 482
BseSI GKGCMC 1 cut(s) 726
BseXI GCAGC 4 cut(s) 964, 1147, 1296, 1360
BsgI GTGCAG 3 cut(s) 29, 963, 984
Bsh1236I CGCG 1 cut(s) 1080
BshFI GGCC 5 cut(s) 39, 71, 679, 1176, 1302
BshNI GGYRCC 2 cut(s) 723, 905
BshVI ATCGAT 1 cut(s) 671
BsiHKAI GWGCWC 1 cut(s) 310
BsiHKCI CYCGRG 1 cut(s) 73
BslFI GGGAC 1 cut(s) 554
BslI CCNNNNNNNGG 4 cut(s) 511, 600, 1201, 1252
BsmAI GTCTC 2 cut(s) 165, 1008
BsmFI GGGAC 1 cut(s) 554
BsnI GGCC 5 cut(s) 39, 71, 679, 1176, 1302
Bso31I GGTCTC 1 cut(s) 165
BsoBI CYCGRG 1 cut(s) 73
Bsp1286I GDGCHC 2 cut(s) 310, 726
Bsp1407I TGTACA 1 cut(s) 162
Bsp143I GATC 4 cut(s) 48, 590, 672, 1087
Bsp19I CCATGG 2 cut(s) 229, 276
BspANI GGCC 5 cut(s) 39, 71, 679, 1176, 1302
BspCNI CTCAG 2 cut(s) 118, 338
BspDI ATCGAT 1 cut(s) 671
BspFNI CGCG 1 cut(s) 1080
BspLI GGNNCC 6 cut(s) 70, 592, 640, 725, 907, 992
BspMI ACCTGC 2 cut(s) 575, 1271
BspPI GGATC 2 cut(s) 585, 598
BspT107I GGYRCC 2 cut(s) 723, 905
BspTNI GGTCTC 1 cut(s) 165
BsrDI GCAATG 3 cut(s) 210, 560, 715
BsrGI TGTACA 1 cut(s) 162
BsrI ACTGG 2 cut(s) 175, 605
BssECI CCNNGG 3 cut(s) 229, 276, 397
BssMI GATC 4 cut(s) 48, 590, 672, 1087
BssNI GRCGYC 1 cut(s) 906
BssT1I CCWWGG 2 cut(s) 229, 276
Bst2UI CCWGG 3 cut(s) 368, 398, 756
Bst4CI ACNGT 5 cut(s) 506, 545, 711, 799, 1297
Bst6I CTCTTC 1 cut(s) 1144
BstACI GRCGYC 1 cut(s) 906
BstAPI GCANNNNNTGC 1 cut(s) 791
BstAUI TGTACA 1 cut(s) 162
BstC8I GCNNGC 7 cut(s) 258, 582, 663, 722, 982, 1178, 1353
BstDEI CTNAG 2 cut(s) 126, 325
BstDSI CCRYGG 2 cut(s) 229, 276
BstF5I GGATG 4 cut(s) 923, 946, 1063, 1191
BstFNI CGCG 1 cut(s) 1080
BstH2I RGCGCY 1 cut(s) 909
BstHHI GCGC 1 cut(s) 908
BstKTI GATC 4 cut(s) 51, 593, 675, 1090
BstMAI GTCTC 2 cut(s) 165, 1008
BstMBI GATC 4 cut(s) 48, 590, 672, 1087
BstMWI GCNNNNNNNGC 3 cut(s) 479, 791, 912
BstNI CCWGG 3 cut(s) 368, 398, 756
BstNSI RCATGY 3 cut(s) 314, 449, 665
BstPAI GACNNNNGTC 1 cut(s) 741
BstSCI CCNGG 3 cut(s) 366, 396, 754
BstSFI CTRYAG 2 cut(s) 414, 746
BstSLI GKGCMC 1 cut(s) 726
BstUI CGCG 1 cut(s) 1080
BstV1I GCAGC 4 cut(s) 964, 1147, 1296, 1360
BstX2I RGATCY 1 cut(s) 590
BstXI CCANNNNNNTGG 1 cut(s) 802
BstYI RGATCY 1 cut(s) 590
Bsu15I ATCGAT 1 cut(s) 671
BsuRI GGCC 5 cut(s) 39, 71, 679, 1176, 1302
BsuTUI ATCGAT 1 cut(s) 671
BtgI CCRYGG 2 cut(s) 229, 276
BtgZI GCGATG 1 cut(s) 1095
BtsCI GGATG 4 cut(s) 923, 946, 1063, 1191
BtsIMutI CAGTG 6 cut(s) 182, 707, 795, 820, 1049, 1360
BveI ACCTGC 2 cut(s) 575, 1271
Cac8I GCNNGC 7 cut(s) 258, 582, 663, 722, 982, 1178, 1353
CfoI GCGC 1 cut(s) 908
Cfr13I GGNCC 3 cut(s) 69, 1175, 1301
ClaI ATCGAT 1 cut(s) 671
Csp6I GTAC 3 cut(s) 155, 163, 240
CviAII CATG 5 cut(s) 230, 277, 311, 446, 662
CviQI GTAC 3 cut(s) 155, 163, 240
DdeI CTNAG 2 cut(s) 126, 325
DinI GGCGCC 1 cut(s) 907
DpnI GATC 4 cut(s) 50, 592, 674, 1089
DpnII GATC 4 cut(s) 48, 590, 672, 1087
DraIII CACNNNGTG 1 cut(s) 730
Eam1104I CTCTTC 1 cut(s) 1144
EarI CTCTTC 1 cut(s) 1144
EciI GGCGGA 1 cut(s) 1161
Eco130I CCWWGG 2 cut(s) 229, 276
Eco31I GGTCTC 1 cut(s) 165
Eco57I CTGAAG 1 cut(s) 1073
Eco88I CYCGRG 1 cut(s) 73
EcoO109I RGGNCCY 1 cut(s) 69
EcoRI GAATTC 1 cut(s) 1342
EcoRII CCWGG 3 cut(s) 366, 396, 754
EcoT14I CCWWGG 2 cut(s) 229, 276
EcoT22I ATGCAT 1 cut(s) 667
EgeI GGCGCC 1 cut(s) 907
EheI GGCGCC 1 cut(s) 907
ErhI CCWWGG 2 cut(s) 229, 276
FaeI CATG 5 cut(s) 233, 280, 314, 449, 665
FalI AAGNNNNNCTT 2 cut(s) 1046, 1078
FaqI GGGAC 1 cut(s) 554
FatI CATG 5 cut(s) 229, 276, 310, 445, 661
FauI CCCGC 3 cut(s) 573, 713, 1185
FbaI TGATCA 1 cut(s) 48
FblI GTMKAC 1 cut(s) 745
Fnu4HI GCNGC 6 cut(s) 317, 978, 1116, 1161, 1310, 1349
FokI GGATG 4 cut(s) 930, 933, 1070, 1178
Fsp4HI GCNGC 6 cut(s) 317, 978, 1116, 1161, 1310, 1349
FspBI CTAG 2 cut(s) 269, 1119
GlaI GCGC 1 cut(s) 907
GluI GCNGC 6 cut(s) 317, 978, 1116, 1161, 1310, 1349
GsuI CTGGAG 2 cut(s) 389, 622
HaeII RGCGCY 1 cut(s) 909
HaeIII GGCC 5 cut(s) 39, 71, 679, 1176, 1302
HhaI GCGC 1 cut(s) 908
Hin1I GRCGYC 1 cut(s) 906
Hin1II CATG 5 cut(s) 233, 280, 314, 449, 665
Hin6I GCGC 1 cut(s) 906
HinP1I GCGC 1 cut(s) 906
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HinfI GANTC 1 cut(s) 751
HphI GGTGA 5 cut(s) 58, 293, 359, 399, 1057
Hpy166II GTNNAC 4 cut(s) 163, 451, 521, 746
Hpy188I TCNGA 4 cut(s) 152, 595, 613, 1186
Hpy188III TCNNGA 9 cut(s) 75, 269, 327, 490, 499, 885, 1135, 1202, 1253
Hpy8I GTNNAC 4 cut(s) 163, 451, 521, 746
Hpy99I CGWCG 3 cut(s) 152, 1254, 1301
HpyAV CCTTC 4 cut(s) 420, 1048, 1206, 1320
HpyCH4III ACNGT 5 cut(s) 506, 545, 711, 799, 1297
HpyCH4IV ACGT 3 cut(s) 624, 768, 889
HpyF10VI GCNNNNNNNGC 3 cut(s) 479, 791, 912
HpyF3I CTNAG 2 cut(s) 126, 325
HpySE526I ACGT 3 cut(s) 624, 768, 889
Hsp92I GRCGYC 1 cut(s) 906
Hsp92II CATG 5 cut(s) 233, 280, 314, 449, 665
HspAI GCGC 1 cut(s) 906
KasI GGCGCC 1 cut(s) 905
Ksp22I TGATCA 1 cut(s) 48
Kzo9I GATC 4 cut(s) 48, 590, 672, 1087
LmnI GCTCC 4 cut(s) 305, 442, 1277, 1360
Lsp1109I GCAGC 4 cut(s) 964, 1147, 1296, 1360
LweI GCATC 6 cut(s) 76, 262, 674, 908, 1072, 1235
MaeI CTAG 2 cut(s) 269, 1119
MaeII ACGT 3 cut(s) 624, 768, 889
MaeIII GTNAC 4 cut(s) 424, 625, 815, 1099
MalI GATC 4 cut(s) 50, 592, 674, 1089
MboI GATC 4 cut(s) 48, 590, 672, 1087
MboII GAAGA 2 cut(s) 334, 1161
MflI RGATCY 1 cut(s) 590
MhlI GDGCHC 2 cut(s) 310, 726
Mly113I GGCGCC 1 cut(s) 906
MmeI TCCRAC 3 cut(s) 130, 283, 974
Mph1103I ATGCAT 1 cut(s) 667
MseI TTAA 6 cut(s) 477, 686, 774, 863, 1043, 1268
MslI CAYNNNNRTG 3 cut(s) 800, 927, 1106
MspR9I CCNGG 3 cut(s) 368, 398, 756
MvaI CCWGG 3 cut(s) 368, 398, 756
MvnI CGCG 1 cut(s) 1080
MwoI GCNNNNNNNGC 3 cut(s) 479, 791, 912
NarI GGCGCC 1 cut(s) 906
NcoI CCATGG 2 cut(s) 229, 276
NdeII GATC 4 cut(s) 48, 590, 672, 1087
NlaIII CATG 5 cut(s) 233, 280, 314, 449, 665
NlaIV GGNNCC 6 cut(s) 70, 592, 640, 725, 907, 992
NmuCI GTSAC 2 cut(s) 815, 1099
NsiI ATGCAT 1 cut(s) 667
NspI RCATGY 3 cut(s) 314, 449, 665
OliI CACNNNNGTG 1 cut(s) 1106
PaeI GCATGC 1 cut(s) 665
PaeR7I CTCGAG 1 cut(s) 73
PaqCI CACCTGC 1 cut(s) 575
PciI ACATGT 1 cut(s) 310
PfeI GAWTC 1 cut(s) 751
PfoI TCCNGGA 2 cut(s) 366, 754
PkrI GCNGC 6 cut(s) 318, 979, 1117, 1162, 1311, 1350
PluTI GGCGCC 1 cut(s) 909
PscI ACATGT 1 cut(s) 310
PshAI GACNNNNGTC 1 cut(s) 741
Psp6I CCWGG 3 cut(s) 366, 396, 754
PspGI CCWGG 3 cut(s) 366, 396, 754
PspN4I GGNNCC 6 cut(s) 70, 592, 640, 725, 907, 992
PspPI GGNCC 3 cut(s) 69, 1175, 1301
PsuI RGATCY 1 cut(s) 590
RsaI GTAC 3 cut(s) 156, 164, 241
RsaNI GTAC 3 cut(s) 155, 163, 240
RseI CAYNNNNRTG 3 cut(s) 800, 927, 1106
SaqAI TTAA 6 cut(s) 477, 686, 774, 863, 1043, 1268
SatI GCNGC 6 cut(s) 317, 978, 1116, 1161, 1310, 1349
Sau3AI GATC 4 cut(s) 48, 590, 672, 1087
Sau96I GGNCC 3 cut(s) 69, 1175, 1301
ScrFI CCNGG 3 cut(s) 368, 398, 756
SduI GDGCHC 2 cut(s) 310, 726
SfaNI GCATC 6 cut(s) 76, 262, 674, 908, 1072, 1235
SfcI CTRYAG 2 cut(s) 414, 746
SfoI GGCGCC 1 cut(s) 907
Sfr274I CTCGAG 1 cut(s) 73
SlaI CTCGAG 1 cut(s) 73
SmiMI CAYNNNNRTG 3 cut(s) 800, 927, 1106
SmlI CTYRAG 1 cut(s) 73
SmoI CTYRAG 1 cut(s) 73
SphI GCATGC 1 cut(s) 665
SspDI GGCGCC 1 cut(s) 905
SspMI CTAG 2 cut(s) 269, 1119
StyD4I CCNGG 3 cut(s) 366, 396, 754
StyI CCWWGG 2 cut(s) 229, 276
TaaI ACNGT 5 cut(s) 506, 545, 711, 799, 1297
TaiI ACGT 3 cut(s) 627, 771, 892
TaqI TCGA 3 cut(s) 74, 671, 1134
TatI WGTACW 2 cut(s) 162, 239
TauI GCSGC 2 cut(s) 319, 1118
TfiI GAWTC 1 cut(s) 751
Tru1I TTAA 6 cut(s) 477, 686, 774, 863, 1043, 1268
Tru9I TTAA 6 cut(s) 477, 686, 774, 863, 1043, 1268
TscAI CASTG 5 cut(s) 182, 714, 802, 820, 1056
TseFI GTSAC 2 cut(s) 815, 1099
TseI GCWGC 4 cut(s) 977, 1160, 1309, 1348
Tsp45I GTSAC 2 cut(s) 815, 1099
TspDTI ATGAA 5 cut(s) 549, 669, 752, 862, 1332
TspGWI ACGGA 1 cut(s) 136
TspRI CASTG 5 cut(s) 182, 714, 802, 820, 1056
XapI RAATTY 4 cut(s) 430, 494, 682, 1342
XbaI TCTAGA 1 cut(s) 268
XceI RCATGY 3 cut(s) 314, 449, 665
XhoI CTCGAG 1 cut(s) 73
XmiI GTMKAC 1 cut(s) 745
XspI CTAG 2 cut(s) 269, 1119
Zsp2I ATGCAT 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.