Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013545.1

Orthogroup ID

OG0009723

Physical Location & Seq

Genomic Coordinates Reverse (-)

22293 .. 23044

Gene Structure 752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013545.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atgaaattcccagcaagttgtcctttcaaaaccctccatgttcccgccaattttacagcaaagccaaagcatcacgtccaaaaacttctcggaaagatctccggccactccaaacccaaccacattggaaattccgttcaagtcttgacgaaaaatagtagtagcttctcaatctcgacgacgttcaaggacgagatagagcaagaattggagaattcgagcagcgataagagttggattcacttagtgggaattggaggctgtggattgtctgcgctggccatgcttgcactcaaacatgtttatggattttaccaagtgacatggagttttaatagggtcatgaggttggtgctcggatatgggataaagcagcttcatggatacattgcaggaagccggggcatgttttatatcgttcattcaatgagaaatatacaaaggagcagtgccttaagattaccagacgaaacaagtactgctattcctcaagacaatgtggagaatttgtatgtagagttggttggagttcccgtgttgagtatggctctattcgcttggccaattgaagttgaagctacattgttgacatttatttgcgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mur_ligase Mur_ligase_C Mur_ligase_M

Protein Analysis

201

Amino Acids

22.28

Weight (kDa)

9.15

Isoelectric Point (pI)

36.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009723)

Species	Orthologous Gene IDs
malus_domestica	MD01G1208200.v1.1 MD07G1278800.v1.1
prunus_persica	Prupe.2G300700_v2.0.a1
pyrus_communis	pycom01g21880
rosa_chinensis	RchiOBHm_Chr1g0378261
rosa_laevigata	RLG00000026454 RLG00000026455
rosa_multiflora	Rmu_sc0006315.1_g000004 Rmu_sc0006315.1_g000010 Rmu_sc0013545.1_g000004
rosa_roxburghii	Rroxscaffold_4G00280540 Rroxscaffold_4G00280550 Rroxscaffold_4G00280600
rosa_rugosa	Rorug01G0407600 Rorug01G0407800
rosa_samantha	Rh1AG421700 Rh1AG422200 Rh1BG386900 Rh1CG400400 Rh1DG418000
rosa_wichuraiana	Rw0G013300 Rw1G037520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	45
AcoI	YGGCCR	3 cut(s)	103, 279, 560
AcsI	RAATTY	4 cut(s)	5, 130, 214, 505
AdeI	CACNNNGTG	1 cut(s)	247
AfaI	GTAC	1 cut(s)	478
AflII	CTTAAG	1 cut(s)	454
AflIII	ACRYGT	1 cut(s)	298
AgsI	TTSAA	6 cut(s)	28, 140, 187, 426, 569, 575
AjiI	CACGTC	1 cut(s)	76
AloI	GAACNNNNNNTCC	2 cut(s)	120, 152
AluBI	AGCT	3 cut(s)	165, 376, 578
AluI	AGCT	3 cut(s)	165, 376, 578
Alw21I	GWGCWC	1 cut(s)	357
AoxI	GGCC	3 cut(s)	103, 279, 560
ApeKI	GCWGC	2 cut(s)	222, 373
ApoI	RAATTY	4 cut(s)	5, 130, 214, 505
AspLEI	GCGC	1 cut(s)	277
AsuC2I	CCSGG	1 cut(s)	401
BalI	TGGCCA	2 cut(s)	281, 562
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	2 cut(s)	234, 385
BciVI	GTATCC	1 cut(s)	377
BcnI	CCSGG	1 cut(s)	401
BfrI	CTTAAG	1 cut(s)	454
BfuI	GTATCC	1 cut(s)	377
BglII	AGATCT	1 cut(s)	96
BisI	GCNGC	2 cut(s)	223, 374
BlsI	GCNGC	2 cut(s)	224, 375
BmcAI	AGTACT	1 cut(s)	478
Bme1390I	CCNGG	1 cut(s)	401
BmgBI	CACGTC	1 cut(s)	76
BmrFI	CCNGG	1 cut(s)	401
BmsI	GCATC	1 cut(s)	79
BplI	GAGNNNNNCTC	2 cut(s)	532, 564
BpuEI	CTTGAG	1 cut(s)	474
BpuMI	CCSGG	1 cut(s)	401
BsaJI	CCNNGG	1 cut(s)	400
BsaXI	ACNNNNNCTCC	4 cut(s)	494, 519, 524, 549
Bse3DI	GCAATG	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	400
BseMI	GCAATG	1 cut(s)	387
BseXI	GCAGC	2 cut(s)	234, 385
BseYI	CCCAGC	1 cut(s)	10
BshFI	GGCC	3 cut(s)	105, 281, 562
BsiHKAI	GWGCWC	1 cut(s)	357
BsiSI	CCGG	2 cut(s)	102, 400
BsnI	GGCC	3 cut(s)	105, 281, 562
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	1 cut(s)	96
BspACI	CCGC	1 cut(s)	45
BspANI	GGCC	3 cut(s)	105, 281, 562
BspHI	TCATGA	1 cut(s)	342
BspTI	CTTAAG	1 cut(s)	454
BsrDI	GCAATG	1 cut(s)	387
BssECI	CCNNGG	1 cut(s)	400
BssMI	GATC	1 cut(s)	96
BstAFI	CTTAAG	1 cut(s)	454
BstC8I	GCNNGC	2 cut(s)	279, 288
BstDEI	CTNAG	1 cut(s)	244
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	1 cut(s)	99
BstMBI	GATC	1 cut(s)	96
BstMWI	GCNNNNNNNGC	3 cut(s)	283, 287, 554
BstNSI	RCATGY	2 cut(s)	302, 409
BstSCI	CCNGG	1 cut(s)	399
BstV1I	GCAGC	2 cut(s)	234, 385
BstX2I	RGATCY	1 cut(s)	96
BstYI	RGATCY	1 cut(s)	96
BsuI	GTATCC	1 cut(s)	377
BsuRI	GGCC	3 cut(s)	105, 281, 562
BtrI	CACGTC	1 cut(s)	76
BtsI	GCAGTG	1 cut(s)	454
BtsIMutI	CAGTG	1 cut(s)	454
Cac8I	GCNNGC	2 cut(s)	279, 288
CciI	TCATGA	1 cut(s)	342
CfoI	GCGC	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	477
CviAII	CATG	7 cut(s)	38, 283, 299, 324, 343, 380, 406
CviQI	GTAC	1 cut(s)	477
DdeI	CTNAG	1 cut(s)	244
DpnI	GATC	1 cut(s)	98
DpnII	GATC	1 cut(s)	96
DraIII	CACNNNGTG	1 cut(s)	247
EaeI	YGGCCR	3 cut(s)	103, 279, 560
EcoRI	GAATTC	1 cut(s)	214
FaeI	CATG	7 cut(s)	41, 286, 302, 327, 346, 383, 409
FalI	AAGNNNNNCTT	2 cut(s)	7, 39
FatI	CATG	7 cut(s)	37, 282, 298, 323, 342, 379, 405
FauI	CCCGC	1 cut(s)	52
Fnu4HI	GCNGC	2 cut(s)	223, 374
Fsp4HI	GCNGC	2 cut(s)	223, 374
GlaI	GCGC	1 cut(s)	276
GluI	GCNGC	2 cut(s)	223, 374
GsaI	CCCAGC	1 cut(s)	14
HaeIII	GGCC	3 cut(s)	105, 281, 562
HapII	CCGG	2 cut(s)	102, 400
HhaI	GCGC	1 cut(s)	277
Hin1II	CATG	7 cut(s)	41, 286, 302, 327, 346, 383, 409
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HincII	GTYRAC	1 cut(s)	588
HindII	GTYRAC	1 cut(s)	588
HinfI	GANTC	1 cut(s)	238
HpaII	CCGG	2 cut(s)	102, 400
Hpy166II	GTNNAC	1 cut(s)	588
Hpy188I	TCNGA	2 cut(s)	92, 359
Hpy188III	TCNNGA	4 cut(s)	145, 175, 343, 491
Hpy8I	GTNNAC	1 cut(s)	588
Hpy99I	CGWCG	2 cut(s)	181, 184
HpyCH4IV	ACGT	2 cut(s)	75, 182
HpyCH4V	TGCA	2 cut(s)	290, 392
HpyF10VI	GCNNNNNNNGC	3 cut(s)	283, 287, 554
HpyF3I	CTNAG	1 cut(s)	244
HpySE526I	ACGT	2 cut(s)	75, 182
Hsp92II	CATG	7 cut(s)	41, 286, 302, 327, 346, 383, 409
HspAI	GCGC	1 cut(s)	275
Kzo9I	GATC	1 cut(s)	96
LmnI	GCTCC	1 cut(s)	444
LpnPI	CCDG	6 cut(s)	24, 115, 263, 378, 413, 477
Lsp1109I	GCAGC	2 cut(s)	234, 385
LweI	GCATC	1 cut(s)	79
MaeII	ACGT	2 cut(s)	75, 182
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	1 cut(s)	98
MboI	GATC	1 cut(s)	96
MfeI	CAATTG	1 cut(s)	564
MflI	RGATCY	1 cut(s)	96
MhlI	GDGCHC	1 cut(s)	357
MlsI	TGGCCA	2 cut(s)	281, 562
MluCI	AATT	8 cut(s)	5, 49, 130, 206, 214, 252, 505, 564
MluNI	TGGCCA	2 cut(s)	281, 562
MmeI	TCCRAC	2 cut(s)	215, 505
MnlI	CCTC	4 cut(s)	44, 251, 339, 498
Mox20I	TGGCCA	2 cut(s)	281, 562
MscI	TGGCCA	2 cut(s)	281, 562
MseI	TTAA	2 cut(s)	333, 455
MslI	CAYNNNNRTG	1 cut(s)	303
Msp20I	TGGCCA	2 cut(s)	281, 562
MspCI	CTTAAG	1 cut(s)	454
MspI	CCGG	2 cut(s)	102, 400
MspR9I	CCNGG	1 cut(s)	401
MunI	CAATTG	1 cut(s)	564
MwoI	GCNNNNNNNGC	3 cut(s)	283, 287, 554
NciI	CCSGG	1 cut(s)	401
NdeII	GATC	1 cut(s)	96
NlaIII	CATG	7 cut(s)	41, 286, 302, 327, 346, 383, 409
NmuCI	GTSAC	1 cut(s)	319
NspI	RCATGY	2 cut(s)	302, 409
PagI	TCATGA	1 cut(s)	342
PciI	ACATGT	1 cut(s)	298
PfeI	GAWTC	1 cut(s)	238
PkrI	GCNGC	2 cut(s)	224, 375
PscI	ACATGT	1 cut(s)	298
PspFI	CCCAGC	1 cut(s)	10
PsuI	RGATCY	1 cut(s)	96
RsaI	GTAC	1 cut(s)	478
RsaNI	GTAC	1 cut(s)	477
RseI	CAYNNNNRTG	1 cut(s)	303
SaqAI	TTAA	2 cut(s)	333, 455
SatI	GCNGC	2 cut(s)	223, 374
Sau3AI	GATC	1 cut(s)	96
ScaI	AGTACT	1 cut(s)	478
ScrFI	CCNGG	1 cut(s)	401
SduI	GDGCHC	1 cut(s)	357
SetI	ASST	6 cut(s)	78, 167, 185, 350, 378, 580
SfaNI	GCATC	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	303
SmlI	CTYRAG	2 cut(s)	454, 489
SmoI	CTYRAG	2 cut(s)	454, 489
Sse9I	AATT	8 cut(s)	5, 49, 130, 206, 214, 252, 505, 564
SsiI	CCGC	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	399
TaiI	ACGT	2 cut(s)	78, 185
TaqI	TCGA	2 cut(s)	176, 218
TasI	AATT	8 cut(s)	5, 49, 130, 206, 214, 252, 505, 564
TatI	WGTACW	1 cut(s)	476
TfiI	GAWTC	1 cut(s)	238
Tru1I	TTAA	2 cut(s)	333, 455
Tru9I	TTAA	2 cut(s)	333, 455
TscAI	CASTG	1 cut(s)	454
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	2 cut(s)	222, 373
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	3 cut(s)	17, 368, 410
TspGWI	ACGGA	1 cut(s)	124
TspRI	CASTG	1 cut(s)	454
Vha464I	CTTAAG	1 cut(s)	454
XapI	RAATTY	4 cut(s)	5, 130, 214, 505
XceI	RCATGY	2 cut(s)	302, 409
ZrmI	AGTACT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.