Mur ligase family, catalytic domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD01G1208200.v1.1 MD07G1278800.v1.1 |
| prunus_persica | Prupe.2G300700_v2.0.a1 |
| pyrus_communis | pycom01g21880 |
| rosa_chinensis | RchiOBHm_Chr1g0378261 |
| rosa_laevigata | RLG00000026454 RLG00000026455 |
| rosa_multiflora | Rmu_sc0006315.1_g000004 Rmu_sc0006315.1_g000010 Rmu_sc0013545.1_g000004 |
| rosa_roxburghii | Rroxscaffold_4G00280540 Rroxscaffold_4G00280550 Rroxscaffold_4G00280600 |
| rosa_rugosa | Rorug01G0407600 Rorug01G0407800 |
| rosa_samantha | Rh1AG421700 Rh1AG422200 Rh1BG386900 Rh1CG400400 Rh1DG418000 |
| rosa_wichuraiana | Rw0G013300 Rw1G037520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 280, 360 |
| AclI | AACGTT | 1 cut(s) | 243 |
| AclWI | GGATC | 1 cut(s) | 337 |
| AcoI | YGGCCR | 1 cut(s) | 327 |
| AcuI | CTGAAG | 1 cut(s) | 176 |
| AgsI | TTSAA | 3 cut(s) | 65, 77, 320 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 219, 251 |
| AluBI | AGCT | 2 cut(s) | 80, 263 |
| AluI | AGCT | 2 cut(s) | 80, 263 |
| Alw26I | GTCTC | 1 cut(s) | 111 |
| AlwI | GGATC | 1 cut(s) | 337 |
| AoxI | GGCC | 1 cut(s) | 327 |
| ApeKI | GCWGC | 4 cut(s) | 80, 149, 218, 263 |
| AsuC2I | CCSGG | 1 cut(s) | 347 |
| AsuHPI | GGTGA | 1 cut(s) | 268 |
| BbvI | GCAGC | 4 cut(s) | 67, 161, 205, 250 |
| BccI | CCATC | 1 cut(s) | 54 |
| BcnI | CCSGG | 1 cut(s) | 347 |
| BcoDI | GTCTC | 1 cut(s) | 111 |
| BfaI | CTAG | 1 cut(s) | 222 |
| BfmI | CTRYAG | 1 cut(s) | 338 |
| BisI | GCNGC | 4 cut(s) | 81, 150, 219, 264 |
| BlsI | GCNGC | 4 cut(s) | 82, 151, 220, 265 |
| Bme1390I | CCNGG | 1 cut(s) | 347 |
| BmrFI | CCNGG | 1 cut(s) | 347 |
| BmsI | GCATC | 1 cut(s) | 11 |
| BpuMI | CCSGG | 1 cut(s) | 347 |
| BsaWI | WCCGGW | 1 cut(s) | 376 |
| Bse3DI | GCAATG | 1 cut(s) | 171 |
| BseGI | GGATG | 3 cut(s) | 26, 49, 166 |
| BseMI | GCAATG | 1 cut(s) | 171 |
| BseX3I | CGGCCG | 1 cut(s) | 327 |
| BseXI | GCAGC | 4 cut(s) | 67, 161, 205, 250 |
| BsgI | GTGCAG | 1 cut(s) | 207 |
| Bsh1285I | CGRYCG | 1 cut(s) | 330 |
| BshFI | GGCC | 1 cut(s) | 329 |
| BsiEI | CGRYCG | 1 cut(s) | 330 |
| BsiSI | CCGG | 3 cut(s) | 326, 347, 377 |
| BsmAI | GTCTC | 1 cut(s) | 111 |
| BsnI | GGCC | 1 cut(s) | 329 |
| Bsp143I | GATC | 3 cut(s) | 190, 342, 391 |
| BspACI | CCGC | 2 cut(s) | 280, 360 |
| BspANI | GGCC | 1 cut(s) | 329 |
| BspPI | GGATC | 1 cut(s) | 337 |
| BsrDI | GCAATG | 1 cut(s) | 171 |
| BssMI | GATC | 3 cut(s) | 190, 342, 391 |
| Bst4CI | ACNGT | 1 cut(s) | 140 |
| BstC8I | GCNNGC | 1 cut(s) | 85 |
| BstF5I | GGATG | 3 cut(s) | 26, 49, 166 |
| BstKTI | GATC | 3 cut(s) | 193, 345, 394 |
| BstMAI | GTCTC | 1 cut(s) | 111 |
| BstMBI | GATC | 3 cut(s) | 190, 342, 391 |
| BstMCI | CGRYCG | 1 cut(s) | 330 |
| BstSCI | CCNGG | 1 cut(s) | 345 |
| BstSFI | CTRYAG | 1 cut(s) | 338 |
| BstV1I | GCAGC | 4 cut(s) | 67, 161, 205, 250 |
| BstX2I | RGATCY | 1 cut(s) | 342 |
| BstYI | RGATCY | 1 cut(s) | 342 |
| BstZI | CGGCCG | 1 cut(s) | 327 |
| BsuRI | GGCC | 1 cut(s) | 329 |
| BtsCI | GGATG | 3 cut(s) | 26, 49, 166 |
| BtsIMutI | CAGTG | 1 cut(s) | 152 |
| Cac8I | GCNNGC | 1 cut(s) | 85 |
| CviJI | RGCY | 4 cut(s) | 80, 127, 263, 329 |
| CviKI_1 | RGCY | 4 cut(s) | 80, 127, 263, 329 |
| DpnI | GATC | 3 cut(s) | 192, 344, 393 |
| DpnII | GATC | 3 cut(s) | 190, 342, 391 |
| EaeI | YGGCCR | 1 cut(s) | 327 |
| EagI | CGGCCG | 1 cut(s) | 327 |
| EciI | GGCGGA | 1 cut(s) | 349 |
| EclXI | CGGCCG | 1 cut(s) | 327 |
| Eco52I | CGGCCG | 1 cut(s) | 327 |
| Eco57I | CTGAAG | 1 cut(s) | 176 |
| FaiI | YATR | 8 cut(s) | 16, 29, 31, 33, 42, 132, 216, 285 |
| FauI | CCCGC | 1 cut(s) | 287 |
| Fnu4HI | GCNGC | 4 cut(s) | 81, 150, 219, 264 |
| FokI | GGATG | 3 cut(s) | 33, 36, 173 |
| Fsp4HI | GCNGC | 4 cut(s) | 81, 150, 219, 264 |
| FspBI | CTAG | 1 cut(s) | 222 |
| GluI | GCNGC | 4 cut(s) | 81, 150, 219, 264 |
| HaeIII | GGCC | 1 cut(s) | 329 |
| HapII | CCGG | 3 cut(s) | 326, 347, 377 |
| HpaII | CCGG | 3 cut(s) | 326, 347, 377 |
| HphI | GGTGA | 1 cut(s) | 268 |
| Hpy188I | TCNGA | 1 cut(s) | 314 |
| Hpy188III | TCNNGA | 1 cut(s) | 405 |
| HpyAV | CCTTC | 2 cut(s) | 151, 246 |
| HpyCH4III | ACNGT | 1 cut(s) | 140 |
| HpyCH4IV | ACGT | 1 cut(s) | 243 |
| HpyCH4V | TGCA | 1 cut(s) | 188 |
| HpySE526I | ACGT | 1 cut(s) | 243 |
| Kzo9I | GATC | 3 cut(s) | 190, 342, 391 |
| LpnPI | CCDG | 5 cut(s) | 97, 101, 339, 360, 390 |
| Lsp1109I | GCAGC | 4 cut(s) | 67, 161, 205, 250 |
| LweI | GCATC | 1 cut(s) | 11 |
| MaeI | CTAG | 1 cut(s) | 222 |
| MaeII | ACGT | 1 cut(s) | 243 |
| MaeIII | GTNAC | 1 cut(s) | 202 |
| MalI | GATC | 3 cut(s) | 192, 344, 393 |
| MboI | GATC | 3 cut(s) | 190, 342, 391 |
| MboII | GAAGA | 1 cut(s) | 346 |
| MflI | RGATCY | 1 cut(s) | 342 |
| MluCI | AATT | 1 cut(s) | 372 |
| MmeI | TCCRAC | 1 cut(s) | 313 |
| MnlI | CCTC | 4 cut(s) | 138, 188, 202, 398 |
| MspI | CCGG | 3 cut(s) | 326, 347, 377 |
| MspR9I | CCNGG | 1 cut(s) | 347 |
| NciI | CCSGG | 1 cut(s) | 347 |
| NdeII | GATC | 3 cut(s) | 190, 342, 391 |
| PkrI | GCNGC | 4 cut(s) | 82, 151, 220, 265 |
| Psp1406I | AACGTT | 1 cut(s) | 243 |
| PsuI | RGATCY | 1 cut(s) | 342 |
| SatI | GCNGC | 4 cut(s) | 81, 150, 219, 264 |
| Sau3AI | GATC | 3 cut(s) | 190, 342, 391 |
| ScrFI | CCNGG | 1 cut(s) | 347 |
| SetI | ASST | 5 cut(s) | 82, 213, 246, 265, 339 |
| SfaNI | GCATC | 1 cut(s) | 11 |
| SfcI | CTRYAG | 1 cut(s) | 338 |
| Sse9I | AATT | 1 cut(s) | 372 |
| SsiI | CCGC | 2 cut(s) | 280, 360 |
| SspMI | CTAG | 1 cut(s) | 222 |
| StyD4I | CCNGG | 1 cut(s) | 345 |
| TaaI | ACNGT | 1 cut(s) | 140 |
| TaiI | ACGT | 1 cut(s) | 246 |
| TaqI | TCGA | 1 cut(s) | 390 |
| TaqII | GACCGA | 1 cut(s) | 390 |
| TasI | AATT | 1 cut(s) | 372 |
| TscAI | CASTG | 1 cut(s) | 159 |
| TseI | GCWGC | 4 cut(s) | 80, 149, 218, 263 |
| TspRI | CASTG | 1 cut(s) | 159 |
| XspI | CTAG | 1 cut(s) | 222 |