Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0009723

Physical Location & Seq

Genomic Coordinates Reverse (-)

65147101 .. 65160804

Gene Structure 13704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G037520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGCTTGCACTGAAACAGGGTTATGAGGTTAGTGGCTCGGATATGGGATGGAGTAGCTTCATGGATGCATTGCAGGAAGCCGGGGCGTGTTTGCATATAGTGACGAGAATACCTGACGTCGTTGTTTCAAGTGCTATTCCTCAAGACAATGTGGAGATTTTGTATGAAAAGTCGGTTGGAGTTCCCGGCTACAATCTTATTGCTGTAAGCGGTAGCCATGGAAAGAGTACAACTGCAAGTATGCTTGCTTATGTTCTAGACGCCATGGGTGATAGTCTTATAGCAGTAGTTGGAGCTCACATGCCACAGTTCTCGGGTGGAAACATTATCTTGGGAGATGGTCAAAATTTTGTGCTAGAGGCTGATGAATATGATGGTTGCTTCCTGGGACTATCACCTTATATAGCTGTTGTAACAAATCTGGATTGGGAGCATGTTGATATTTTCGAAAACGAGGAAGCAGTTAAAGCTACTTTCCATAAATTCCTGAATCTAATCAGGGTGGGTGGACATCTCATTTTATGTGGGGATAGTCAGGGTGCCTATTCCTTGCTGACTGATGTAAAGCAAGCAATTGGATCAGATACTTTGAGCGGTCTAATGCATTCTCCGCTAGAAAAATGTTGCATTGGCTACATCATAACAACTTATGGAACTACAAGTTCTAATGAATGGAGTGCATCATCAATTAGGCCAAATTTAAAGGGTGGTAGTGATTATACACTGGTATTGGCAGACATCAGTCTTCAGGTTCCAGGAGTTCATAATGTCCTAAATTCACTAGCAGTTATTGCCACTGTGATAGCATTATACAATAACCAACGTGAAATTAACAATACAATAAATGGTTTGAGGTTGCATTTGAACAATTTTATAGGCGTTTCAAGACGTTTTGAAATGATTGGCACAATATGTGGATGCAATATATATGATGATTATGCCCATCATCCATGGAAGTTCAAGCAGTTATTCAAGCTGCCTGCCAGAAGTTCCCTATCAAGTCTCTTTTATCGTTTAGCAGCACTGAAGGATGATTTTGCCATTGCCCTCTGTGGTGCAGATCAAGTTGTAGTTACAGAGGTTTATGCAGCTAGAGAAATAGATGTTGGGAACGTTCGTGGAAGGGAGTTAGCTGCTTCTGTAATCACCCGCCATGGTGATGTGGTAGAGAGGTTGGTATATCAAATATGCAAGAACCCTCATCATGATACCATTGTCTTAACACTTGGAGCAGGTGATATAACAACAGTGGGGCCAAAGCTGCTCTATGAATTGCAAAGAAGTTACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mur_ligase Mur_ligase_C Mur_ligase_M

Protein Analysis

430

Amino Acids

46.71

Weight (kDa)

5.4

Isoelectric Point (pI)

30.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mur_ligase	PF01225	3 - 64	1.3e-07	Mur ligase family, catalytic domain
Mur_ligase_M	PF08245	69 - 180	9.1e-12	Mur ligase middle domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009723)

Species	Orthologous Gene IDs
malus_domestica	MD01G1208200.v1.1 MD07G1278800.v1.1
prunus_persica	Prupe.2G300700_v2.0.a1
pyrus_communis	pycom01g21880
rosa_chinensis	RchiOBHm_Chr1g0378261
rosa_laevigata	RLG00000026454 RLG00000026455
rosa_multiflora	Rmu_sc0006315.1_g000004 Rmu_sc0006315.1_g000010 Rmu_sc0013545.1_g000004
rosa_roxburghii	Rroxscaffold_4G00280540 Rroxscaffold_4G00280550 Rroxscaffold_4G00280600
rosa_rugosa	Rorug01G0407600 Rorug01G0407800
rosa_samantha	Rh1AG421700 Rh1AG422200 Rh1BG386900 Rh1CG400400 Rh1DG418000
rosa_wichuraiana	Rw0G013300 Rw1G037520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1223
AatII	GACGTC	1 cut(s)	120
Acc36I	ACCTGC	1 cut(s)	1223
AccB1I	GGYRCC	1 cut(s)	539
AccBSI	CCGCTC	1 cut(s)	594
AciI	CCGC	4 cut(s)	210, 594, 611, 1150
AclI	AACGTT	1 cut(s)	1113
AclWI	GGATC	1 cut(s)	586
AcsI	RAATTY	4 cut(s)	346, 482, 697, 775
AcuI	CTGAAG	2 cut(s)	731, 1046
AcyI	GRCGYC	2 cut(s)	117, 261
AfaI	GTAC	1 cut(s)	229
AgsI	TTSAA	6 cut(s)	129, 865, 885, 896, 961, 973
AjnI	CCWGG	2 cut(s)	384, 754
AjuI	GAANNNNNNNTTGG	4 cut(s)	159, 191, 1089, 1121
AluBI	AGCT	8 cut(s)	57, 296, 407, 470, 976, 1091, 1133, 1261
AluI	AGCT	8 cut(s)	57, 296, 407, 470, 976, 1091, 1133, 1261
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	1 cut(s)	1007
AlwI	GGATC	1 cut(s)	586
Ama87I	CYCGRG	1 cut(s)	313
AoxI	GGCC	2 cut(s)	692, 1253
ApeKI	GCWGC	5 cut(s)	976, 1019, 1088, 1133, 1261
ApoI	RAATTY	4 cut(s)	346, 482, 697, 775
AspS9I	GGNCC	1 cut(s)	1253
AsuC2I	CCSGG	2 cut(s)	82, 186
AsuHPI	GGTGA	5 cut(s)	281, 387, 1138, 1169, 1247
AsuII	TTCGAA	1 cut(s)	447
AvaI	CYCGRG	1 cut(s)	313
BaeI	ACNNNNGTAYC	2 cut(s)	1200, 1233
BanI	GGYRCC	1 cut(s)	539
BanII	GRGCYC	1 cut(s)	298
BbsI	GAAGAC	1 cut(s)	737
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	5 cut(s)	963, 1031, 1100, 1120, 1248
BccI	CCATC	4 cut(s)	42, 332, 368, 951
BciT130I	CCWGG	2 cut(s)	386, 756
BcnI	CCSGG	2 cut(s)	82, 186
BcoDI	GTCTC	1 cut(s)	1007
BfaI	CTAG	5 cut(s)	257, 356, 614, 782, 1092
BfuAI	ACCTGC	1 cut(s)	1223
BisI	GCNGC	5 cut(s)	977, 1020, 1089, 1134, 1262
BlsI	GCNGC	5 cut(s)	978, 1021, 1090, 1135, 1263
Bme1390I	CCNGG	4 cut(s)	82, 186, 386, 756
BmeT110I	CYCGRG	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	1253
BmiI	GGNNCC	3 cut(s)	541, 753, 1254
BmrFI	CCNGG	4 cut(s)	82, 186, 386, 756
BmsI	GCATC	3 cut(s)	55, 689, 908
BoxI	GACNNNNGTC	1 cut(s)	741
BpiI	GAAGAC	1 cut(s)	737
Bpu14I	TTCGAA	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	126
BpuMI	CCSGG	2 cut(s)	82, 186
BsaHI	GRCGYC	2 cut(s)	117, 261
BsaJI	CCNNGG	6 cut(s)	81, 217, 264, 385, 950, 1153
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bse1I	ACTGG	1 cut(s)	729
Bse3DI	GCAATG	2 cut(s)	68, 1041
BseBI	CCWGG	2 cut(s)	386, 756
BseDI	CCNNGG	6 cut(s)	81, 217, 264, 385, 950, 1153
BseGI	GGATG	5 cut(s)	53, 70, 923, 946, 1036
BseMI	GCAATG	2 cut(s)	68, 1041
BseNI	ACTGG	1 cut(s)	729
BseXI	GCAGC	5 cut(s)	963, 1031, 1100, 1120, 1248
BsgI	GTGCAG	1 cut(s)	1077
BshFI	GGCC	2 cut(s)	694, 1255
BshNI	GGYRCC	1 cut(s)	539
BsiHKAI	GWGCWC	1 cut(s)	298
BsiHKCI	CYCGRG	1 cut(s)	313
BsiSI	CCGG	2 cut(s)	81, 186
BslFI	GGGAC	1 cut(s)	402
BsmAI	GTCTC	1 cut(s)	1007
BsmFI	GGGAC	1 cut(s)	402
BsmI	GAATGC	1 cut(s)	604
BsnI	GGCC	2 cut(s)	694, 1255
BsoBI	CYCGRG	1 cut(s)	313
Bsp119I	TTCGAA	1 cut(s)	447
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	2 cut(s)	578, 1060
Bsp19I	CCATGG	4 cut(s)	217, 264, 950, 1153
BspACI	CCGC	4 cut(s)	210, 594, 611, 1150
BspANI	GGCC	2 cut(s)	694, 1255
BspHI	TCATGA	1 cut(s)	1204
BspLI	GGNNCC	3 cut(s)	541, 753, 1254
BspMI	ACCTGC	1 cut(s)	1223
BspPI	GGATC	1 cut(s)	586
BspT104I	TTCGAA	1 cut(s)	447
BspT107I	GGYRCC	1 cut(s)	539
BsrBI	CCGCTC	1 cut(s)	594
BsrDI	GCAATG	2 cut(s)	68, 1041
BsrI	ACTGG	1 cut(s)	729
BssECI	CCNNGG	6 cut(s)	81, 217, 264, 385, 950, 1153
BssMI	GATC	2 cut(s)	578, 1060
BssNI	GRCGYC	2 cut(s)	117, 261
BssT1I	CCWWGG	4 cut(s)	217, 264, 950, 1153
Bst2UI	CCWGG	2 cut(s)	386, 756
Bst4CI	ACNGT	3 cut(s)	309, 799, 1249
BstACI	GRCGYC	2 cut(s)	117, 261
BstAPI	GCANNNNNTGC	1 cut(s)	791
BstBI	TTCGAA	1 cut(s)	447
BstC8I	GCNNGC	4 cut(s)	6, 246, 570, 981
BstDSI	CCRYGG	4 cut(s)	217, 264, 950, 1153
BstF5I	GGATG	5 cut(s)	53, 70, 923, 946, 1036
BstKTI	GATC	2 cut(s)	581, 1063
BstMAI	GTCTC	1 cut(s)	1007
BstMBI	GATC	2 cut(s)	578, 1060
BstMWI	GCNNNNNNNGC	4 cut(s)	467, 610, 791, 1261
BstNI	CCWGG	2 cut(s)	386, 756
BstNSI	RCATGY	2 cut(s)	304, 437
BstPAI	GACNNNNGTC	1 cut(s)	741
BstSCI	CCNGG	4 cut(s)	80, 184, 384, 754
BstV1I	GCAGC	5 cut(s)	963, 1031, 1100, 1120, 1248
BstV2I	GAAGAC	1 cut(s)	737
BsuRI	GGCC	2 cut(s)	694, 1255
BtgI	CCRYGG	4 cut(s)	217, 264, 950, 1153
BtsCI	GGATG	5 cut(s)	53, 70, 923, 946, 1036
BtsIMutI	CAGTG	5 cut(s)	8, 722, 795, 1022, 1254
BveI	ACCTGC	1 cut(s)	1223
Cac8I	GCNNGC	4 cut(s)	6, 246, 570, 981
CciI	TCATGA	1 cut(s)	1204
Cfr13I	GGNCC	1 cut(s)	1253
CseI	GACGC	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	8 cut(s)	61, 218, 265, 301, 434, 951, 1154, 1205
CviQI	GTAC	1 cut(s)	228
DpnI	GATC	2 cut(s)	580, 1062
DpnII	GATC	2 cut(s)	578, 1060
DraI	TTTAAA	1 cut(s)	702
Ecl136II	GAGCTC	1 cut(s)	296
Eco130I	CCWWGG	4 cut(s)	217, 264, 950, 1153
Eco24I	GRGCYC	1 cut(s)	298
Eco53kI	GAGCTC	1 cut(s)	296
Eco57I	CTGAAG	2 cut(s)	731, 1046
Eco88I	CYCGRG	1 cut(s)	313
EcoICRI	GAGCTC	1 cut(s)	296
EcoRII	CCWGG	2 cut(s)	384, 754
EcoT14I	CCWWGG	4 cut(s)	217, 264, 950, 1153
EcoT22I	ATGCAT	2 cut(s)	70, 606
EcoT38I	GRGCYC	1 cut(s)	298
ErhI	CCWWGG	4 cut(s)	217, 264, 950, 1153
FaeI	CATG	8 cut(s)	64, 221, 268, 304, 437, 954, 1157, 1208
FaqI	GGGAC	1 cut(s)	402
FatI	CATG	8 cut(s)	60, 217, 264, 300, 433, 950, 1153, 1204
FauI	CCCGC	1 cut(s)	1157
Fnu4HI	GCNGC	5 cut(s)	977, 1020, 1089, 1134, 1262
FokI	GGATG	5 cut(s)	60, 77, 930, 933, 1043
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	5 cut(s)	977, 1020, 1089, 1134, 1262
FspBI	CTAG	5 cut(s)	257, 356, 614, 782, 1092
GluI	GCNGC	5 cut(s)	977, 1020, 1089, 1134, 1262
HaeIII	GGCC	2 cut(s)	694, 1255
HapII	CCGG	2 cut(s)	81, 186
HgaI	GACGC	1 cut(s)	269
Hin1I	GRCGYC	2 cut(s)	117, 261
Hin1II	CATG	8 cut(s)	64, 221, 268, 304, 437, 954, 1157, 1208
HinfI	GANTC	1 cut(s)	490
HpaII	CCGG	2 cut(s)	81, 186
HphI	GGTGA	5 cut(s)	281, 387, 1138, 1169, 1247
Hpy166II	GTNNAC	1 cut(s)	509
Hpy188I	TCNGA	2 cut(s)	40, 583
Hpy188III	TCNNGA	6 cut(s)	143, 257, 422, 487, 885, 1205
Hpy8I	GTNNAC	1 cut(s)	509
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	2 cut(s)	1021, 1116
HpyCH4III	ACNGT	3 cut(s)	309, 799, 1249
HpyCH4IV	ACGT	4 cut(s)	117, 823, 889, 1113
HpyF10VI	GCNNNNNNNGC	4 cut(s)	467, 610, 791, 1261
HpySE526I	ACGT	4 cut(s)	117, 823, 889, 1113
Hsp92I	GRCGYC	2 cut(s)	117, 261
Hsp92II	CATG	8 cut(s)	64, 221, 268, 304, 437, 954, 1157, 1208
Kzo9I	GATC	2 cut(s)	578, 1060
LmnI	GCTCC	3 cut(s)	293, 430, 1229
Lsp1109I	GCAGC	5 cut(s)	963, 1031, 1100, 1120, 1248
LweI	GCATC	3 cut(s)	55, 689, 908
MaeI	CTAG	5 cut(s)	257, 356, 614, 782, 1092
MaeII	ACGT	4 cut(s)	117, 823, 889, 1113
MaeIII	GTNAC	4 cut(s)	100, 412, 1072, 1283
MalI	GATC	2 cut(s)	580, 1062
MbiI	CCGCTC	1 cut(s)	594
MboI	GATC	2 cut(s)	578, 1060
MboII	GAAGA	1 cut(s)	737
MfeI	CAATTG	1 cut(s)	573
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	9 cut(s)	346, 482, 573, 687, 697, 775, 828, 868, 1271
MmeI	TCCRAC	2 cut(s)	157, 271
MnlI	CCTC	9 cut(s)	19, 150, 352, 448, 846, 1058, 1072, 1164, 1209
Mph1103I	ATGCAT	2 cut(s)	70, 606
MseI	TTAA	4 cut(s)	465, 701, 831, 1220
MslI	CAYNNNNRTG	1 cut(s)	1158
MspI	CCGG	2 cut(s)	81, 186
MspR9I	CCNGG	4 cut(s)	82, 186, 386, 756
MunI	CAATTG	1 cut(s)	573
Mva1269I	GAATGC	1 cut(s)	604
MvaI	CCWGG	2 cut(s)	386, 756
MwoI	GCNNNNNNNGC	4 cut(s)	467, 610, 791, 1261
NciI	CCSGG	2 cut(s)	82, 186
NcoI	CCATGG	4 cut(s)	217, 264, 950, 1153
NdeII	GATC	2 cut(s)	578, 1060
NlaIII	CATG	8 cut(s)	64, 221, 268, 304, 437, 954, 1157, 1208
NlaIV	GGNNCC	3 cut(s)	541, 753, 1254
NmuCI	GTSAC	1 cut(s)	100
NsiI	ATGCAT	2 cut(s)	70, 606
NspI	RCATGY	2 cut(s)	304, 437
NspV	TTCGAA	1 cut(s)	447
PagI	TCATGA	1 cut(s)	1204
PaqCI	CACCTGC	1 cut(s)	1223
PctI	GAATGC	1 cut(s)	604
PfeI	GAWTC	1 cut(s)	490
PfoI	TCCNGGA	1 cut(s)	754
PkrI	GCNGC	5 cut(s)	978, 1021, 1090, 1135, 1263
PshAI	GACNNNNGTC	1 cut(s)	741
Psp124BI	GAGCTC	1 cut(s)	298
Psp1406I	AACGTT	1 cut(s)	1113
Psp6I	CCWGG	2 cut(s)	384, 754
PspGI	CCWGG	2 cut(s)	384, 754
PspN4I	GGNNCC	3 cut(s)	541, 753, 1254
PspPI	GGNCC	1 cut(s)	1253
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
RseI	CAYNNNNRTG	1 cut(s)	1158
SacI	GAGCTC	1 cut(s)	298
SaqAI	TTAA	4 cut(s)	465, 701, 831, 1220
SatI	GCNGC	5 cut(s)	977, 1020, 1089, 1134, 1262
Sau3AI	GATC	2 cut(s)	578, 1060
Sau96I	GGNCC	1 cut(s)	1253
ScrFI	CCNGG	4 cut(s)	82, 186, 386, 756
SduI	GDGCHC	1 cut(s)	298
SfaNI	GCATC	3 cut(s)	55, 689, 908
SfuI	TTCGAA	1 cut(s)	447
SmiMI	CAYNNNNRTG	1 cut(s)	1158
SmlI	CTYRAG	1 cut(s)	141
SmoI	CTYRAG	1 cut(s)	141
Sse9I	AATT	9 cut(s)	346, 482, 573, 687, 697, 775, 828, 868, 1271
SsiI	CCGC	4 cut(s)	210, 594, 611, 1150
SspMI	CTAG	5 cut(s)	257, 356, 614, 782, 1092
SstI	GAGCTC	1 cut(s)	298
StyD4I	CCNGG	4 cut(s)	80, 184, 384, 754
StyI	CCWWGG	4 cut(s)	217, 264, 950, 1153
TaaI	ACNGT	3 cut(s)	309, 799, 1249
TaiI	ACGT	4 cut(s)	120, 826, 892, 1116
TaqI	TCGA	1 cut(s)	447
TasI	AATT	9 cut(s)	346, 482, 573, 687, 697, 775, 828, 868, 1271
TatI	WGTACW	1 cut(s)	227
TfiI	GAWTC	1 cut(s)	490
Tru1I	TTAA	4 cut(s)	465, 701, 831, 1220
Tru9I	TTAA	4 cut(s)	465, 701, 831, 1220
TscAI	CASTG	5 cut(s)	15, 729, 802, 1029, 1254
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	5 cut(s)	976, 1019, 1088, 1133, 1261
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	6 cut(s)	49, 180, 381, 684, 752, 1284
TspRI	CASTG	5 cut(s)	15, 729, 802, 1029, 1254
XapI	RAATTY	4 cut(s)	346, 482, 697, 775
XbaI	TCTAGA	1 cut(s)	256
XceI	RCATGY	2 cut(s)	304, 437
XspI	CTAG	5 cut(s)	257, 356, 614, 782, 1092
ZraI	GACGTC	1 cut(s)	118
Zsp2I	ATGCAT	2 cut(s)	70, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.