Rmu_sc0013545.1_g000003

RNA binding

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013545.1
Physical Location & Seq
Reverse (-)
9706 .. 10956
1251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013545.1_g000003.1.cds

Sequence Viewer

Length: 1251 bp
atggatcagatcaaagtgagtgaatcggaaacggagaatgtgaatcggaatcggaatcacagttggagtccgaatccgagttcgaatcgcaaccccaaattgtatgtatgttgccaggaagaaaacttcttcaggggctgctacagcatcctcgccatcgatttggagtgtttgatggcttgctcctgtgactttgatgaagacaaaggtgtggaaatcaagtgcgctagctgcgaatcttgccccgatcaagatttgcggccagtcggtttactctgcggcgattactgcgatatccccgactgcatgggctgctgtccctttggctcccaggttgtcttcgtaggcggcgagttatcaccgtgggcgtatgattgcagacccagccgaaaggttttcgtctatgacattgaggatgagctccggcttcagggcttagaaaacggcaacaacatcaaggagttggacaaaagctgcaacggtgttgcaaatatccatcatgacatattttatccgcggatgatggagacaggaggagatctctatgctctcggagttgtcaaatgtgacgtcagtgtctctcaggtatacaggcgccaatcgcagcggtgggaagctctgcctccacccataccgagtttcagtcatgatttcactagtgaaactctatattctctactttacacggacaacaagatctttctgtccacctatttcccacaaatgccggtcaaatgtttcgacaccgaccgtaaatgctggatagctgattccggcttccacagtgaggttttcccctttgtgggtgaggctttagtcgtggacttggataaacctttcaaggagaagttggtgtttacctatgatcgtgatattataaacgtgtggcgattgggattgactgatgatttgaaaggttcttatcttaccagctacgggtctgtgaatatgaaacccaggttgcttggcttattggaaaatttgtgtgaactatctaagcagcttcgtctcatcgatctaggagatggaaaaatctgctttgttagggccaggagctaccctgttgaggaacgtactgtaaattcactagggcttgagaaggtgcgtgttgttatcatagtattcaaatatgagtttgatccgagagcacgagccttgccctacaagatcctgtctacccgcgcctttaccatcatgccccattgcaaggaatcctgctttgtccgcctgcttaaatgctttgtgctctag

Protein Analysis

416

Amino Acids

47.56

Weight (kDa)

5.3

Isoelectric Point (pI)

49.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018238)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 878
AasI GACNNNNNNGTC 1 cut(s) 575
AatII GACGTC 1 cut(s) 573
AccB1I GGYRCC 1 cut(s) 594
AccI GTMKAC 2 cut(s) 588, 1175
AccII CGCG 2 cut(s) 517, 1182
AciI CCGC 8 cut(s) 259, 279, 348, 515, 517, 607, 1180, 1225
AclWI GGATC 3 cut(s) 12, 1133, 1162
AcoI YGGCCR 1 cut(s) 260
AcsI RAATTY 2 cut(s) 979, 1081
AcuI CTGAAG 2 cut(s) 115, 413
AcyI GRCGYC 2 cut(s) 570, 595
AfaI GTAC 1 cut(s) 1075
AfiI CCNNNNNNNGG 7 cut(s) 430, 787, 802, 803, 936, 1066, 1207
AflIII ACRYGT 1 cut(s) 882
AgsI TTSAA 3 cut(s) 841, 913, 1126
AhlI ACTAGT 1 cut(s) 656
AjnI CCWGG 4 cut(s) 114, 330, 956, 1049
AluBI AGCT 8 cut(s) 231, 421, 474, 617, 767, 933, 1003, 1056
AluI AGCT 8 cut(s) 231, 421, 474, 617, 767, 933, 1003, 1056
Alw21I GWGCWC 3 cut(s) 423, 1150, 1248
Alw26I GTCTC 3 cut(s) 521, 583, 1013
AlwI GGATC 3 cut(s) 12, 1133, 1162
AlwNI CAGNNNCTG 1 cut(s) 138
AoxI GGCC 2 cut(s) 260, 1047
ApeKI GCWGC 6 cut(s) 138, 231, 312, 474, 604, 1000
ApoI RAATTY 2 cut(s) 979, 1081
ArsI GACNNNNNNTTYG 4 cut(s) 555, 587, 892, 924
AspLEI GCGC 3 cut(s) 227, 597, 1184
AspS9I GGNCC 1 cut(s) 1047
AsuHPI GGTGA 2 cut(s) 351, 818
AsuII TTCGAA 1 cut(s) 83
AsuNHI GCTAGC 1 cut(s) 227
BanI GGYRCC 1 cut(s) 594
BanII GRGCYC 1 cut(s) 423
BauI CACGAG 1 cut(s) 1149
BbsI GAAGAC 2 cut(s) 207, 331
Bbv12I GWGCWC 3 cut(s) 423, 1150, 1248
BbvI GCAGC 6 cut(s) 125, 218, 299, 461, 616, 1012
BccI CCATC 6 cut(s) 164, 169, 504, 517, 1019, 1199
BceAI ACGGC 1 cut(s) 460
BciT130I CCWGG 4 cut(s) 116, 332, 958, 1051
BcoDI GTCTC 3 cut(s) 521, 583, 1013
BcuI ACTAGT 1 cut(s) 656
BfaI CTAG 5 cut(s) 228, 657, 1019, 1088, 1249
BfmI CTRYAG 1 cut(s) 142
BfoI RGCGCY 1 cut(s) 598
BglII AGATCT 2 cut(s) 538, 696
BisI GCNGC 9 cut(s) 139, 232, 260, 280, 313, 349, 475, 605, 1001
BlsI GCNGC 9 cut(s) 140, 233, 261, 281, 314, 350, 476, 606, 1002
Bme1390I CCNGG 4 cut(s) 116, 332, 958, 1051
BmgT120I GGNCC 1 cut(s) 1047
BmiI GGNNCC 2 cut(s) 328, 596
BmrFI CCNGG 4 cut(s) 116, 332, 958, 1051
BmsI GCATC 1 cut(s) 156
BmtI GCTAGC 1 cut(s) 231
BpiI GAAGAC 2 cut(s) 207, 331
BplI GAGNNNNNCTC 2 cut(s) 525, 557
Bpu14I TTCGAA 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 1115
Bsa29I ATCGAT 2 cut(s) 159, 1014
BsaHI GRCGYC 2 cut(s) 570, 595
BsaJI CCNNGG 4 cut(s) 330, 362, 515, 956
Bsc4I CCNNNNNNNGG 7 cut(s) 430, 787, 802, 803, 936, 1066, 1207
Bse118I RCCGGY 1 cut(s) 727
Bse1I ACTGG 1 cut(s) 263
Bse3DI GCAATG 1 cut(s) 1201
BseBI CCWGG 4 cut(s) 116, 332, 958, 1051
BseCI ATCGAT 2 cut(s) 159, 1014
BseDI CCNNGG 4 cut(s) 330, 362, 515, 956
BseGI GGATG 3 cut(s) 147, 421, 525
BseLI CCNNNNNNNGG 7 cut(s) 430, 787, 802, 803, 936, 1066, 1207
BseMI GCAATG 1 cut(s) 1201
BseMII CTCAG 1 cut(s) 596
BseNI ACTGG 1 cut(s) 263
BseRI GAGGAG 1 cut(s) 549
BseXI GCAGC 6 cut(s) 125, 218, 299, 461, 616, 1012
BseYI CCCAGC 1 cut(s) 383
Bsh1236I CGCG 2 cut(s) 517, 1182
Bsh1285I CGRYCG 1 cut(s) 751
BshFI GGCC 2 cut(s) 262, 1049
BshNI GGYRCC 1 cut(s) 594
BshVI ATCGAT 2 cut(s) 159, 1014
BsiEI CGRYCG 1 cut(s) 751
BsiHKAI GWGCWC 3 cut(s) 423, 1150, 1248
BsiSI CCGG 3 cut(s) 424, 728, 774
BslFI GGGAC 1 cut(s) 303
BslI CCNNNNNNNGG 7 cut(s) 430, 787, 802, 803, 936, 1066, 1207
BsmAI GTCTC 3 cut(s) 521, 583, 1013
BsmBI CGTCTC 1 cut(s) 1013
BsmFI GGGAC 1 cut(s) 303
BsnI GGCC 2 cut(s) 262, 1049
Bsp119I TTCGAA 1 cut(s) 83
Bsp1286I GDGCHC 3 cut(s) 423, 1150, 1248
Bsp143I GATC 9 cut(s) 4, 9, 247, 538, 696, 865, 1015, 1138, 1167
BspACI CCGC 8 cut(s) 259, 279, 348, 515, 517, 607, 1180, 1225
BspANI GGCC 2 cut(s) 262, 1049
BspCNI CTCAG 1 cut(s) 595
BspDI ATCGAT 2 cut(s) 159, 1014
BspFNI CGCG 2 cut(s) 517, 1182
BspHI TCATGA 2 cut(s) 499, 646
BspLI GGNNCC 2 cut(s) 328, 596
BspOI GCTAGC 1 cut(s) 231
BspPI GGATC 3 cut(s) 12, 1133, 1162
BspT104I TTCGAA 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 594
BsrDI GCAATG 1 cut(s) 1201
BsrFI RCCGGY 1 cut(s) 727
BsrI ACTGG 1 cut(s) 263
BssAI RCCGGY 1 cut(s) 727
BssECI CCNNGG 4 cut(s) 330, 362, 515, 956
BssMI GATC 9 cut(s) 4, 9, 247, 538, 696, 865, 1015, 1138, 1167
BssNAI GTATAC 1 cut(s) 589
BssNI GRCGYC 2 cut(s) 570, 595
BssSI CACGAG 1 cut(s) 1149
Bst1107I GTATAC 1 cut(s) 589
Bst2BI CACGAG 1 cut(s) 1149
Bst2UI CCWGG 4 cut(s) 116, 332, 958, 1051
Bst4CI ACNGT 6 cut(s) 62, 363, 482, 752, 785, 1078
BstACI GRCGYC 2 cut(s) 570, 595
BstAPI GCANNNNNTGC 1 cut(s) 312
BstBI TTCGAA 1 cut(s) 83
BstC8I GCNNGC 3 cut(s) 181, 229, 1229
BstDEI CTNAG 3 cut(s) 436, 582, 996
BstDSI CCRYGG 2 cut(s) 362, 515
BstF5I GGATG 3 cut(s) 147, 421, 525
BstFNI CGCG 2 cut(s) 517, 1182
BstH2I RGCGCY 1 cut(s) 598
BstHHI GCGC 3 cut(s) 227, 597, 1184
BstKTI GATC 9 cut(s) 7, 12, 250, 541, 699, 868, 1018, 1141, 1170
BstMAI GTCTC 3 cut(s) 521, 583, 1013
BstMBI GATC 9 cut(s) 4, 9, 247, 538, 696, 865, 1015, 1138, 1167
BstMCI CGRYCG 1 cut(s) 751
BstMWI GCNNNNNNNGC 8 cut(s) 144, 231, 240, 288, 312, 384, 601, 1224
BstNI CCWGG 4 cut(s) 116, 332, 958, 1051
BstSCI CCNGG 4 cut(s) 114, 330, 956, 1049
BstSFI CTRYAG 1 cut(s) 142
BstUI CGCG 2 cut(s) 517, 1182
BstV1I GCAGC 6 cut(s) 125, 218, 299, 461, 616, 1012
BstV2I GAAGAC 2 cut(s) 207, 331
BstX2I RGATCY 3 cut(s) 538, 696, 1167
BstXI CCANNNNNNTGG 1 cut(s) 163
BstYI RGATCY 3 cut(s) 538, 696, 1167
BstZ17I GTATAC 1 cut(s) 589
Bsu15I ATCGAT 2 cut(s) 159, 1014
BsuRI GGCC 2 cut(s) 262, 1049
BsuTUI ATCGAT 2 cut(s) 159, 1014
BtgI CCRYGG 2 cut(s) 362, 515
BtsCI GGATG 3 cut(s) 147, 421, 525
BtsIMutI CAGTG 2 cut(s) 580, 790
Cac8I GCNNGC 3 cut(s) 181, 229, 1229
CaiI CAGNNNCTG 1 cut(s) 138
CciI TCATGA 2 cut(s) 499, 646
CfoI GCGC 3 cut(s) 227, 597, 1184
Cfr10I RCCGGY 1 cut(s) 727
Cfr13I GGNCC 1 cut(s) 1047
Cfr42I CCGCGG 1 cut(s) 518
ClaI ATCGAT 2 cut(s) 159, 1014
Csp6I GTAC 1 cut(s) 1074
CviAII CATG 4 cut(s) 307, 500, 647, 1195
CviQI GTAC 1 cut(s) 1074
DdeI CTNAG 3 cut(s) 436, 582, 996
DinI GGCGCC 1 cut(s) 596
DpnI GATC 9 cut(s) 6, 11, 249, 540, 698, 867, 1017, 1140, 1169
DpnII GATC 9 cut(s) 4, 9, 247, 538, 696, 865, 1015, 1138, 1167
DrdI GACNNNNNNGTC 1 cut(s) 575
DseDI GACNNNNNNGTC 1 cut(s) 575
EaeI YGGCCR 1 cut(s) 260
EciI GGCGGA 1 cut(s) 1214
Ecl136II GAGCTC 1 cut(s) 421
Eco24I GRGCYC 1 cut(s) 423
Eco32I GATATC 1 cut(s) 295
Eco53kI GAGCTC 1 cut(s) 421
Eco57I CTGAAG 2 cut(s) 115, 413
EcoICRI GAGCTC 1 cut(s) 421
EcoRII CCWGG 4 cut(s) 114, 330, 956, 1049
EcoRV GATATC 1 cut(s) 295
EcoT38I GRGCYC 1 cut(s) 423
EgeI GGCGCC 1 cut(s) 596
EheI GGCGCC 1 cut(s) 596
Esp3I CGTCTC 1 cut(s) 1013
FaeI CATG 4 cut(s) 310, 503, 650, 1198
FaqI GGGAC 1 cut(s) 303
FatI CATG 4 cut(s) 306, 499, 646, 1194
FauI CCCGC 1 cut(s) 1187
FblI GTMKAC 2 cut(s) 588, 1175
Fnu4HI GCNGC 9 cut(s) 139, 232, 260, 280, 313, 349, 475, 605, 1001
FokI GGATG 3 cut(s) 134, 428, 532
FriOI GRGCYC 1 cut(s) 423
Fsp4HI GCNGC 9 cut(s) 139, 232, 260, 280, 313, 349, 475, 605, 1001
FspBI CTAG 5 cut(s) 228, 657, 1019, 1088, 1249
GlaI GCGC 3 cut(s) 226, 596, 1183
GluI GCNGC 9 cut(s) 139, 232, 260, 280, 313, 349, 475, 605, 1001
GsaI CCCAGC 1 cut(s) 387
HaeII RGCGCY 1 cut(s) 598
HaeIII GGCC 2 cut(s) 262, 1049
HapII CCGG 3 cut(s) 424, 728, 774
HhaI GCGC 3 cut(s) 227, 597, 1184
Hin1I GRCGYC 2 cut(s) 570, 595
Hin1II CATG 4 cut(s) 310, 503, 650, 1198
Hin6I GCGC 3 cut(s) 225, 595, 1182
HinP1I GCGC 3 cut(s) 225, 595, 1182
HpaII CCGG 3 cut(s) 424, 728, 774
HphI GGTGA 2 cut(s) 351, 818
Hpy166II GTNNAC 7 cut(s) 272, 589, 708, 823, 858, 989, 1176
Hpy188I TCNGA 8 cut(s) 9, 28, 48, 54, 72, 78, 554, 1143
Hpy188III TCNNGA 4 cut(s) 251, 500, 647, 869
Hpy8I GTNNAC 7 cut(s) 272, 589, 708, 823, 858, 989, 1176
HpyAV CCTTC 1 cut(s) 1093
HpyCH4III ACNGT 6 cut(s) 62, 363, 482, 752, 785, 1078
HpyCH4IV ACGT 3 cut(s) 570, 882, 1072
HpyCH4V TGCA 5 cut(s) 306, 378, 477, 488, 1206
HpyF10VI GCNNNNNNNGC 8 cut(s) 144, 231, 240, 288, 312, 384, 601, 1224
HpyF3I CTNAG 3 cut(s) 436, 582, 996
HpySE526I ACGT 3 cut(s) 570, 882, 1072
Hsp92I GRCGYC 2 cut(s) 570, 595
Hsp92II CATG 4 cut(s) 310, 503, 650, 1198
HspAI GCGC 3 cut(s) 225, 595, 1182
KasI GGCGCC 1 cut(s) 594
KspI CCGCGG 1 cut(s) 518
Kzo9I GATC 9 cut(s) 4, 9, 247, 538, 696, 865, 1015, 1138, 1167
LmnI GCTCC 4 cut(s) 188, 332, 426, 1053
Lsp1109I GCAGC 6 cut(s) 125, 218, 299, 461, 616, 1012
LweI GCATC 1 cut(s) 156
MaeI CTAG 5 cut(s) 228, 657, 1019, 1088, 1249
MaeII ACGT 3 cut(s) 570, 882, 1072
MaeIII GTNAC 2 cut(s) 188, 566
MalI GATC 9 cut(s) 6, 11, 249, 540, 698, 867, 1017, 1140, 1169
MboI GATC 9 cut(s) 4, 9, 247, 538, 696, 865, 1015, 1138, 1167
MboII GAAGA 4 cut(s) 121, 131, 212, 331
MflI RGATCY 3 cut(s) 538, 696, 1167
MhlI GDGCHC 3 cut(s) 423, 1150, 1248
MluCI AATT 3 cut(s) 98, 979, 1081
Mly113I GGCGCC 1 cut(s) 595
MlyI GAGTC 1 cut(s) 76
MmeI TCCRAC 2 cut(s) 44, 444
MnlI CCTC 7 cut(s) 161, 406, 527, 633, 781, 802, 1060
MseI TTAA 1 cut(s) 1233
MspA1I CMGCKG 2 cut(s) 517, 607
MspI CCGG 3 cut(s) 424, 728, 774
MspR9I CCNGG 4 cut(s) 116, 332, 958, 1051
MvaI CCWGG 4 cut(s) 116, 332, 958, 1051
MvnI CGCG 2 cut(s) 517, 1182
MwoI GCNNNNNNNGC 8 cut(s) 144, 231, 240, 288, 312, 384, 601, 1224
NarI GGCGCC 1 cut(s) 595
NdeII GATC 9 cut(s) 4, 9, 247, 538, 696, 865, 1015, 1138, 1167
NheI GCTAGC 1 cut(s) 227
NlaIII CATG 4 cut(s) 310, 503, 650, 1198
NlaIV GGNNCC 2 cut(s) 328, 596
NmuCI GTSAC 2 cut(s) 188, 566
NspV TTCGAA 1 cut(s) 83
PagI TCATGA 2 cut(s) 499, 646
PcsI WCGNNNNNNNCGW 1 cut(s) 348
PfeI GAWTC 9 cut(s) 23, 43, 49, 55, 73, 85, 236, 770, 1211
PkrI GCNGC 9 cut(s) 140, 233, 261, 281, 314, 350, 476, 606, 1002
PleI GAGTC 1 cut(s) 75
PluTI GGCGCC 1 cut(s) 598
PpsI GAGTC 1 cut(s) 75
PsiI TTATAA 1 cut(s) 878
Psp124BI GAGCTC 1 cut(s) 423
Psp6I CCWGG 4 cut(s) 114, 330, 956, 1049
PspFI CCCAGC 1 cut(s) 383
PspGI CCWGG 4 cut(s) 114, 330, 956, 1049
PspN4I GGNNCC 2 cut(s) 328, 596
PspPI GGNCC 1 cut(s) 1047
PstNI CAGNNNCTG 1 cut(s) 138
PsuI RGATCY 3 cut(s) 538, 696, 1167
RsaI GTAC 1 cut(s) 1075
RsaNI GTAC 1 cut(s) 1074
SacI GAGCTC 1 cut(s) 423
SacII CCGCGG 1 cut(s) 518
SaqAI TTAA 1 cut(s) 1233
SatI GCNGC 9 cut(s) 139, 232, 260, 280, 313, 349, 475, 605, 1001
Sau3AI GATC 9 cut(s) 4, 9, 247, 538, 696, 865, 1015, 1138, 1167
Sau96I GGNCC 1 cut(s) 1047
SchI GAGTC 1 cut(s) 76
ScrFI CCNGG 4 cut(s) 116, 332, 958, 1051
SduI GDGCHC 3 cut(s) 423, 1150, 1248
SfaNI GCATC 1 cut(s) 156
SfcI CTRYAG 1 cut(s) 142
SfoI GGCGCC 1 cut(s) 596
Sfr303I CCGCGG 1 cut(s) 518
SfuI TTCGAA 1 cut(s) 83
SgrBI CCGCGG 1 cut(s) 518
SmlI CTYRAG 1 cut(s) 1094
SmoI CTYRAG 1 cut(s) 1094
SpeI ACTAGT 1 cut(s) 656
Sse9I AATT 3 cut(s) 98, 979, 1081
SsiI CCGC 8 cut(s) 259, 279, 348, 515, 517, 607, 1180, 1225
SspDI GGCGCC 1 cut(s) 594
SspMI CTAG 5 cut(s) 228, 657, 1019, 1088, 1249
SstI GAGCTC 1 cut(s) 423
StyD4I CCNGG 4 cut(s) 114, 330, 956, 1049
TaaI ACNGT 6 cut(s) 62, 363, 482, 752, 785, 1078
TaiI ACGT 3 cut(s) 573, 885, 1075
TaqI TCGA 4 cut(s) 83, 159, 741, 1014
TasI AATT 3 cut(s) 98, 979, 1081
TauI GCSGC 3 cut(s) 262, 282, 351
TfiI GAWTC 9 cut(s) 23, 43, 49, 55, 73, 85, 236, 770, 1211
Tru1I TTAA 1 cut(s) 1233
Tru9I TTAA 1 cut(s) 1233
TscAI CASTG 2 cut(s) 580, 790
TseFI GTSAC 2 cut(s) 188, 566
TseI GCWGC 6 cut(s) 138, 231, 312, 474, 604, 1000
Tsp45I GTSAC 2 cut(s) 188, 566
TspDTI ATGAA 2 cut(s) 213, 965
TspGWI ACGGA 2 cut(s) 47, 701
TspRI CASTG 2 cut(s) 580, 790
XapI RAATTY 2 cut(s) 979, 1081
XmiI GTMKAC 2 cut(s) 588, 1175
XspI CTAG 5 cut(s) 228, 657, 1019, 1088, 1249
ZraI GACGTC 1 cut(s) 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.