RLG00000026447

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0018238
Physical Location & Seq
Forward (+)
3113928 .. 3116370
2443 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026447

Sequence Viewer

Length: 1311 bp
ATGGATCGGATCAAAGAGAGTGAATGGGAAACAGTGAACCGGAGTCGGAATCGCAAACGCAATCGCAGTTGGAGTCCGAATCCGAATGTGAAGCGGAATCGGAATCGCAATCGGAATCGCAGTTGGAGTCCGAATCCGAATCCGAATCCGAATCGCAACCGCAAATTGTATATATGTTGCCAGGAAGAAAACATCTCCAGGGGCTGCTACGTCATCCGCGCCATCGATTTGGAGCGTTTGATGGCTTGCTCCTGTGACTTTGATGAAGACAAATGTGTGGAAAACAAGTGCGCTAGCTGCGAATCCTGCCCCGATCAAGATTTGCGGCCAGTCGGTTTACTCTGCGGCGACCAGTACGATGTCCCCACCTGCATGGGCTGCTGTCCCTTTGGCTCCCAAGTTGTCTTCGTAGGCGGCGAGTTAGCACCGCGGTCGCATGATTTCAAACCCAGCCGAAAGGTTTTCGTCTATGACATTGAGGATGAGCTCCGGCTTCAGGGCTTGGAAAACGGCAACAACATCAAGGAGTTGGACAAAAGCTGCAACGGTCTTGCAAATATCCATCATGACATATATTATCCGCGGATGATGGAGATAGGAGGAGATCTCTATGCTCTCGGAGTTGTCAAATGTGACGTCAGTGTCTCTCAGGTATACAGGCGCCAATCGCAGCGGTGGGAAGCTCTGCCTCCACCCATACCCAGTTTCAGGCATGATTTCACTTGTCGTACTATATTTTCTCTACTTTCCACGGACAACAAGATCTTTCTGTCCACCTATTTCCCAAATATGCCGGTCAAATGTTTCGACACCGACCGTAAATGCTGGATAGCTGATTCCGGCTTCGACAGTGAGGTTTTCCCCTTTGCGGGTGAGGCTTTAGTCGTGGACTTGGATAAACCTTGCAAGGAGAAGTTGGTGTTTGCCTATGGTCGTAATACTATATACGTGTGGCGATTGGGATTGACTGATGATTTGAAAGTTTCTTATCTTACCACATACGGGTCTGTGAATGTGAAACCCAGGTTGCTTGGCTTATTCGGAAATTTGTTTGAAGCATCTAGGCAGCATCGTCTCATCGATCTAGGAGATGGAAAAATCTGCTTGGTTAGAGCCAGGAGCTACCAACTTGGTAGAGGTATTATAAATTCAGAAGGGGTTGAGAAGTTGTGTATTGCTATCATAGTATTCAAATATGAGTTTGATCCGACAGCACAAGCCTTGGCCTACAAGTTCCTGTGGCCAGGGTCTGGGAATTTAAAGCATGGGTTGATTCAAATATATGCTATAGAGGAGTTTCTTGCATATTGA

Protein Analysis

437

Amino Acids

50.0

Weight (kDa)

8.27

Isoelectric Point (pI)

50.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 54 - 376 1.6e-09 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018238)

Species Orthologous Gene IDs
rosa_laevigata RLG00000026445 RLG00000026447 RLG00000026453
rosa_multiflora Rmu_sc0006315.1_g000005 Rmu_sc0013545.1_g000003
rosa_roxburghii Rroxscaffold_4G00280560
rosa_rugosa Rorug01G0407600 Rorug01G0407600 Rorug01G0407700
rosa_samantha Rh1AG421800
rosa_wichuraiana Rw1G037550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1145
AarI CACCTGC 1 cut(s) 377
AasI GACNNNNNNGTC 1 cut(s) 641
AatII GACGTC 1 cut(s) 639
Acc36I ACCTGC 1 cut(s) 377
AccB1I GGYRCC 1 cut(s) 660
AccB7I CCANNNNNTGG 1 cut(s) 1250
AccI GTMKAC 1 cut(s) 654
AccII CGCG 3 cut(s) 219, 430, 583
AclWI GGATC 3 cut(s) 12, 17, 1199
AcoI YGGCCR 2 cut(s) 326, 1241
AcsI RAATTY 3 cut(s) 1045, 1147, 1255
AcuI CTGAAG 1 cut(s) 479
AcyI GRCGYC 2 cut(s) 636, 661
AfaI GTAC 2 cut(s) 356, 730
AfiI CCNNNNNNNGG 6 cut(s) 496, 708, 868, 869, 1002, 1250
AflIII ACRYGT 1 cut(s) 948
AgsI TTSAA 5 cut(s) 445, 979, 1055, 1192, 1277
AjnI CCWGG 5 cut(s) 180, 197, 1022, 1115, 1243
AluBI AGCT 6 cut(s) 297, 487, 540, 683, 833, 1122
AluI AGCT 6 cut(s) 297, 487, 540, 683, 833, 1122
Alw21I GWGCWC 1 cut(s) 489
Alw26I GTCTC 2 cut(s) 649, 1079
AlwI GGATC 3 cut(s) 12, 17, 1199
AlwNI CAGNNNCTG 2 cut(s) 204, 1250
AoxI GGCC 3 cut(s) 326, 1224, 1241
ApeKI GCWGC 6 cut(s) 204, 297, 378, 540, 670, 1066
ApoI RAATTY 3 cut(s) 1045, 1147, 1255
ArsI GACNNNNNNTTYG 4 cut(s) 621, 653, 958, 990
AspLEI GCGC 3 cut(s) 221, 293, 663
AsuHPI GGTGA 1 cut(s) 884
AsuNHI GCTAGC 1 cut(s) 293
BalI TGGCCA 1 cut(s) 1243
BanI GGYRCC 1 cut(s) 660
BanII GRGCYC 1 cut(s) 489
BbsI GAAGAC 2 cut(s) 273, 397
Bbv12I GWGCWC 1 cut(s) 489
BbvI GCAGC 6 cut(s) 191, 284, 365, 527, 682, 1078
BccI CCATC 5 cut(s) 230, 235, 570, 583, 1085
BceAI ACGGC 1 cut(s) 526
BcgI CGANNNNNNTGC 2 cut(s) 414, 448
BciT130I CCWGG 5 cut(s) 182, 199, 1024, 1117, 1245
BcoDI GTCTC 2 cut(s) 649, 1079
BfaI CTAG 3 cut(s) 294, 1062, 1085
BfmI CTRYAG 1 cut(s) 1287
BfoI RGCGCY 1 cut(s) 664
BfuAI ACCTGC 1 cut(s) 377
BglII AGATCT 2 cut(s) 604, 762
BisI GCNGC 9 cut(s) 205, 298, 326, 346, 379, 415, 541, 671, 1067
BlsI GCNGC 9 cut(s) 206, 299, 327, 347, 380, 416, 542, 672, 1068
Bme1390I CCNGG 5 cut(s) 182, 199, 1024, 1117, 1245
BmiI GGNNCC 2 cut(s) 394, 662
BmrFI CCNGG 5 cut(s) 182, 199, 1024, 1117, 1245
BmrI ACTGGG 1 cut(s) 696
BmsI GCATC 2 cut(s) 1067, 1078
BmtI GCTAGC 1 cut(s) 297
BmuI ACTGGG 1 cut(s) 696
BpiI GAAGAC 2 cut(s) 273, 397
BplI GAGNNNNNCTC 2 cut(s) 591, 623
BpmI CTGGAG 1 cut(s) 181
Bsa29I ATCGAT 2 cut(s) 225, 1080
BsaAI YACGTR 1 cut(s) 949
BsaHI GRCGYC 2 cut(s) 636, 661
BsaJI CCNNGG 7 cut(s) 198, 428, 581, 750, 1022, 1221, 1244
BsaWI WCCGGW 1 cut(s) 39
Bsc4I CCNNNNNNNGG 6 cut(s) 496, 708, 868, 869, 1002, 1250
Bse118I RCCGGY 1 cut(s) 793
Bse1I ACTGG 3 cut(s) 329, 352, 702
BseBI CCWGG 5 cut(s) 182, 199, 1024, 1117, 1245
BseCI ATCGAT 2 cut(s) 225, 1080
BseDI CCNNGG 7 cut(s) 198, 428, 581, 750, 1022, 1221, 1244
BseGI GGATG 3 cut(s) 213, 487, 591
BseLI CCNNNNNNNGG 6 cut(s) 496, 708, 868, 869, 1002, 1250
BseMII CTCAG 1 cut(s) 662
BseNI ACTGG 3 cut(s) 329, 352, 702
BseRI GAGGAG 2 cut(s) 615, 1307
BseXI GCAGC 6 cut(s) 191, 284, 365, 527, 682, 1078
BseYI CCCAGC 1 cut(s) 449
Bsh1236I CGCG 3 cut(s) 219, 430, 583
Bsh1285I CGRYCG 2 cut(s) 434, 817
BshFI GGCC 3 cut(s) 328, 1226, 1243
BshNI GGYRCC 1 cut(s) 660
BshVI ATCGAT 2 cut(s) 225, 1080
BsiEI CGRYCG 2 cut(s) 434, 817
BsiHKAI GWGCWC 1 cut(s) 489
BsiSI CCGG 4 cut(s) 40, 490, 794, 840
BslFI GGGAC 2 cut(s) 347, 369
BslI CCNNNNNNNGG 6 cut(s) 496, 708, 868, 869, 1002, 1250
BsmAI GTCTC 2 cut(s) 649, 1079
BsmBI CGTCTC 1 cut(s) 1079
BsmFI GGGAC 2 cut(s) 347, 369
BsnI GGCC 3 cut(s) 328, 1226, 1243
Bsp1286I GDGCHC 1 cut(s) 489
Bsp143I GATC 7 cut(s) 4, 9, 313, 604, 762, 1081, 1204
BspANI GGCC 3 cut(s) 328, 1226, 1243
BspCNI CTCAG 1 cut(s) 661
BspDI ATCGAT 2 cut(s) 225, 1080
BspFNI CGCG 3 cut(s) 219, 430, 583
BspHI TCATGA 1 cut(s) 565
BspLI GGNNCC 2 cut(s) 394, 662
BspMI ACCTGC 1 cut(s) 377
BspOI GCTAGC 1 cut(s) 297
BspPI GGATC 3 cut(s) 12, 17, 1199
BspT107I GGYRCC 1 cut(s) 660
BsrFI RCCGGY 1 cut(s) 793
BsrI ACTGG 3 cut(s) 329, 352, 702
BssAI RCCGGY 1 cut(s) 793
BssECI CCNNGG 7 cut(s) 198, 428, 581, 750, 1022, 1221, 1244
BssMI GATC 7 cut(s) 4, 9, 313, 604, 762, 1081, 1204
BssNAI GTATAC 1 cut(s) 655
BssNI GRCGYC 2 cut(s) 636, 661
BssT1I CCWWGG 1 cut(s) 1221
Bst1107I GTATAC 1 cut(s) 655
Bst2UI CCWGG 5 cut(s) 182, 199, 1024, 1117, 1245
Bst4CI ACNGT 4 cut(s) 34, 548, 818, 851
BstACI GRCGYC 2 cut(s) 636, 661
BstAPI GCANNNNNTGC 1 cut(s) 378
BstBAI YACGTR 1 cut(s) 949
BstC8I GCNNGC 2 cut(s) 247, 295
BstDEI CTNAG 1 cut(s) 648
BstDSI CCRYGG 3 cut(s) 428, 581, 750
BstF5I GGATG 3 cut(s) 213, 487, 591
BstFNI CGCG 3 cut(s) 219, 430, 583
BstH2I RGCGCY 1 cut(s) 664
BstHHI GCGC 3 cut(s) 221, 293, 663
BstKTI GATC 7 cut(s) 7, 12, 316, 607, 765, 1084, 1207
BstMAI GTCTC 2 cut(s) 649, 1079
BstMBI GATC 7 cut(s) 4, 9, 313, 604, 762, 1081, 1204
BstMCI CGRYCG 2 cut(s) 434, 817
BstMWI GCNNNNNNNGC 5 cut(s) 297, 306, 378, 667, 875
BstNI CCWGG 5 cut(s) 182, 199, 1024, 1117, 1245
BstSCI CCNGG 5 cut(s) 180, 197, 1022, 1115, 1243
BstSFI CTRYAG 1 cut(s) 1287
BstUI CGCG 3 cut(s) 219, 430, 583
BstV1I GCAGC 6 cut(s) 191, 284, 365, 527, 682, 1078
BstV2I GAAGAC 2 cut(s) 273, 397
BstX2I RGATCY 2 cut(s) 604, 762
BstXI CCANNNNNNTGG 2 cut(s) 229, 373
BstYI RGATCY 2 cut(s) 604, 762
BstZ17I GTATAC 1 cut(s) 655
Bsu15I ATCGAT 2 cut(s) 225, 1080
BsuRI GGCC 3 cut(s) 328, 1226, 1243
BsuTUI ATCGAT 2 cut(s) 225, 1080
BtgI CCRYGG 3 cut(s) 428, 581, 750
BtsCI GGATG 3 cut(s) 213, 487, 591
BtsIMutI CAGTG 3 cut(s) 39, 646, 856
BveI ACCTGC 1 cut(s) 377
Cac8I GCNNGC 2 cut(s) 247, 295
CaiI CAGNNNCTG 2 cut(s) 204, 1250
CciI TCATGA 1 cut(s) 565
CfoI GCGC 3 cut(s) 221, 293, 663
Cfr10I RCCGGY 1 cut(s) 793
Cfr42I CCGCGG 2 cut(s) 431, 584
ClaI ATCGAT 2 cut(s) 225, 1080
Csp6I GTAC 2 cut(s) 355, 729
CviAII CATG 5 cut(s) 373, 437, 566, 713, 1265
CviQI GTAC 2 cut(s) 355, 729
DdeI CTNAG 1 cut(s) 648
DinI GGCGCC 1 cut(s) 662
DpnI GATC 7 cut(s) 6, 11, 315, 606, 764, 1083, 1206
DpnII GATC 7 cut(s) 4, 9, 313, 604, 762, 1081, 1204
DraI TTTAAA 1 cut(s) 1260
DrdI GACNNNNNNGTC 1 cut(s) 641
DseDI GACNNNNNNGTC 1 cut(s) 641
EaeI YGGCCR 2 cut(s) 326, 1241
Ecl136II GAGCTC 1 cut(s) 487
Eco130I CCWWGG 1 cut(s) 1221
Eco24I GRGCYC 1 cut(s) 489
Eco53kI GAGCTC 1 cut(s) 487
Eco57I CTGAAG 1 cut(s) 479
EcoICRI GAGCTC 1 cut(s) 487
EcoRII CCWGG 5 cut(s) 180, 197, 1022, 1115, 1243
EcoT14I CCWWGG 1 cut(s) 1221
EcoT38I GRGCYC 1 cut(s) 489
EgeI GGCGCC 1 cut(s) 662
EheI GGCGCC 1 cut(s) 662
ErhI CCWWGG 1 cut(s) 1221
Esp3I CGTCTC 1 cut(s) 1079
FaeI CATG 5 cut(s) 376, 440, 569, 716, 1268
FaqI GGGAC 2 cut(s) 347, 369
FatI CATG 5 cut(s) 372, 436, 565, 712, 1264
FauI CCCGC 1 cut(s) 862
FblI GTMKAC 1 cut(s) 654
Fnu4HI GCNGC 9 cut(s) 205, 298, 326, 346, 379, 415, 541, 671, 1067
FokI GGATG 3 cut(s) 200, 494, 598
FriOI GRGCYC 1 cut(s) 489
Fsp4HI GCNGC 9 cut(s) 205, 298, 326, 346, 379, 415, 541, 671, 1067
FspBI CTAG 3 cut(s) 294, 1062, 1085
GlaI GCGC 3 cut(s) 220, 292, 662
GluI GCNGC 9 cut(s) 205, 298, 326, 346, 379, 415, 541, 671, 1067
GsaI CCCAGC 1 cut(s) 453
GsuI CTGGAG 1 cut(s) 181
HaeII RGCGCY 1 cut(s) 664
HaeIII GGCC 3 cut(s) 328, 1226, 1243
HapII CCGG 4 cut(s) 40, 490, 794, 840
HhaI GCGC 3 cut(s) 221, 293, 663
Hin1I GRCGYC 2 cut(s) 636, 661
Hin1II CATG 5 cut(s) 376, 440, 569, 716, 1268
Hin6I GCGC 3 cut(s) 219, 291, 661
HinP1I GCGC 3 cut(s) 219, 291, 661
HpaII CCGG 4 cut(s) 40, 490, 794, 840
HphI GGTGA 1 cut(s) 884
Hpy166II GTNNAC 5 cut(s) 37, 338, 655, 774, 889
Hpy188III TCNNGA 2 cut(s) 317, 566
Hpy8I GTNNAC 5 cut(s) 37, 338, 655, 774, 889
HpyAV CCTTC 1 cut(s) 1148
HpyCH4III ACNGT 4 cut(s) 34, 548, 818, 851
HpyCH4IV ACGT 3 cut(s) 210, 636, 948
HpyCH4V TGCA 5 cut(s) 372, 543, 554, 906, 1304
HpyF10VI GCNNNNNNNGC 5 cut(s) 297, 306, 378, 667, 875
HpyF3I CTNAG 1 cut(s) 648
HpySE526I ACGT 3 cut(s) 210, 636, 948
Hsp92I GRCGYC 2 cut(s) 636, 661
Hsp92II CATG 5 cut(s) 376, 440, 569, 716, 1268
HspAI GCGC 3 cut(s) 219, 291, 661
KasI GGCGCC 1 cut(s) 660
KspI CCGCGG 2 cut(s) 431, 584
Kzo9I GATC 7 cut(s) 4, 9, 313, 604, 762, 1081, 1204
LmnI GCTCC 5 cut(s) 232, 254, 398, 492, 1119
Lsp1109I GCAGC 6 cut(s) 191, 284, 365, 527, 682, 1078
LweI GCATC 2 cut(s) 1067, 1078
MaeI CTAG 3 cut(s) 294, 1062, 1085
MaeII ACGT 3 cut(s) 210, 636, 948
MaeIII GTNAC 2 cut(s) 254, 632
MalI GATC 7 cut(s) 6, 11, 315, 606, 764, 1083, 1206
MboI GATC 7 cut(s) 4, 9, 313, 604, 762, 1081, 1204
MboII GAAGA 3 cut(s) 197, 278, 397
MflI RGATCY 2 cut(s) 604, 762
MhlI GDGCHC 1 cut(s) 489
MlsI TGGCCA 1 cut(s) 1243
MluCI AATT 4 cut(s) 164, 1045, 1147, 1255
MluNI TGGCCA 1 cut(s) 1243
Mly113I GGCGCC 1 cut(s) 661
MlyI GAGTC 3 cut(s) 52, 82, 136
MmeI TCCRAC 5 cut(s) 26, 50, 104, 510, 1232
MnlI CCTC 7 cut(s) 472, 593, 699, 847, 868, 1130, 1285
Mox20I TGGCCA 1 cut(s) 1243
MscI TGGCCA 1 cut(s) 1243
MseI TTAA 1 cut(s) 1259
MslI CAYNNNNRTG 1 cut(s) 371
Msp20I TGGCCA 1 cut(s) 1243
MspA1I CMGCKG 3 cut(s) 430, 583, 673
MspI CCGG 4 cut(s) 40, 490, 794, 840
MspR9I CCNGG 5 cut(s) 182, 199, 1024, 1117, 1245
MvaI CCWGG 5 cut(s) 182, 199, 1024, 1117, 1245
MvnI CGCG 3 cut(s) 219, 430, 583
MwoI GCNNNNNNNGC 5 cut(s) 297, 306, 378, 667, 875
NarI GGCGCC 1 cut(s) 661
NdeII GATC 7 cut(s) 4, 9, 313, 604, 762, 1081, 1204
NheI GCTAGC 1 cut(s) 293
NlaIII CATG 5 cut(s) 376, 440, 569, 716, 1268
NlaIV GGNNCC 2 cut(s) 394, 662
NmuCI GTSAC 2 cut(s) 254, 632
PagI TCATGA 1 cut(s) 565
PaqCI CACCTGC 1 cut(s) 377
PcsI WCGNNNNNNNCGW 1 cut(s) 414
PflMI CCANNNNNTGG 1 cut(s) 1250
PkrI GCNGC 9 cut(s) 206, 299, 327, 347, 380, 416, 542, 672, 1068
PleI GAGTC 3 cut(s) 51, 81, 135
PluTI GGCGCC 1 cut(s) 664
PpsI GAGTC 3 cut(s) 51, 81, 135
Ppu21I YACGTR 1 cut(s) 949
PsiI TTATAA 1 cut(s) 1145
Psp124BI GAGCTC 1 cut(s) 489
Psp6I CCWGG 5 cut(s) 180, 197, 1022, 1115, 1243
PspFI CCCAGC 1 cut(s) 449
PspGI CCWGG 5 cut(s) 180, 197, 1022, 1115, 1243
PspN4I GGNNCC 2 cut(s) 394, 662
PstNI CAGNNNCTG 2 cut(s) 204, 1250
PsuI RGATCY 2 cut(s) 604, 762
RsaI GTAC 2 cut(s) 356, 730
RsaNI GTAC 2 cut(s) 355, 729
RseI CAYNNNNRTG 1 cut(s) 371
SacI GAGCTC 1 cut(s) 489
SacII CCGCGG 2 cut(s) 431, 584
SaqAI TTAA 1 cut(s) 1259
SatI GCNGC 9 cut(s) 205, 298, 326, 346, 379, 415, 541, 671, 1067
Sau3AI GATC 7 cut(s) 4, 9, 313, 604, 762, 1081, 1204
SchI GAGTC 3 cut(s) 52, 82, 136
ScrFI CCNGG 5 cut(s) 182, 199, 1024, 1117, 1245
SduI GDGCHC 1 cut(s) 489
SfaNI GCATC 2 cut(s) 1067, 1078
SfcI CTRYAG 1 cut(s) 1287
SfoI GGCGCC 1 cut(s) 662
Sfr303I CCGCGG 2 cut(s) 431, 584
SgrBI CCGCGG 2 cut(s) 431, 584
SmiMI CAYNNNNRTG 1 cut(s) 371
Sse9I AATT 4 cut(s) 164, 1045, 1147, 1255
SspDI GGCGCC 1 cut(s) 660
SspMI CTAG 3 cut(s) 294, 1062, 1085
SstI GAGCTC 1 cut(s) 489
StyD4I CCNGG 5 cut(s) 180, 197, 1022, 1115, 1243
StyI CCWWGG 1 cut(s) 1221
TaaI ACNGT 4 cut(s) 34, 548, 818, 851
TaiI ACGT 3 cut(s) 213, 639, 951
TaqI TCGA 4 cut(s) 225, 807, 846, 1080
TasI AATT 4 cut(s) 164, 1045, 1147, 1255
TauI GCSGC 3 cut(s) 328, 348, 417
Tru1I TTAA 1 cut(s) 1259
Tru9I TTAA 1 cut(s) 1259
TscAI CASTG 3 cut(s) 39, 646, 856
TseFI GTSAC 2 cut(s) 254, 632
TseI GCWGC 6 cut(s) 204, 297, 378, 540, 670, 1066
Tsp45I GTSAC 2 cut(s) 254, 632
TspDTI ATGAA 1 cut(s) 279
TspGWI ACGGA 1 cut(s) 767
TspRI CASTG 3 cut(s) 39, 646, 856
Van91I CCANNNNNTGG 1 cut(s) 1250
XapI RAATTY 3 cut(s) 1045, 1147, 1255
XmiI GTMKAC 1 cut(s) 654
XspI CTAG 3 cut(s) 294, 1062, 1085
ZraI GACGTC 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.