Rh1AG421800

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0018238
Physical Location & Seq
Forward (+)
65163665 .. 65164741
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG421800.1

Sequence Viewer

Length: 1077 bp
ATGGCTTGCTCCTGTGACTTTGATGAAGACAAAGGTGTGGAAATCAAGTGCGCTAGCTGCGAATCCTGCCCCAATCATGATTTGCGGCCAGTCGGTTTACTCTGCGGCGATTACTGCGATATCCCCGACTGCATGGGCTGCTGTCCCTTTGGCTCCCAGGTTGTCTTCGTAGGCGGCGAGTTATCACCGTGGGCGTATGATTGCAGACCCAGCCGAAAGGTTTTCGTCTATGACATTGAGGATGAGCTCCGGCTTCAGGGCTTAGAAAACGGCAACAACATCAAGGAGTTGGACAAAAGCTGCAACGGTGTTGCAAATATCCATCATGACATATTTTATCCGCGGATGATGGAGACAGGAGGAGATCTCTATGCTCTCGGAGTTGTCAAATGTGACGTCAGTGTCTCTCAGGTATACAGGCGCCAATCGCAGCGGTGGGAAGCTCTGCCTCCACCCATACCGAGTTTCAGTCATGATTTCACTAGTGAAACTCTATATTCTCTACTTTACACGGACAACAAGATCTTTCTGTCCACCTATTTCCCACAGATGCCGGTCAAATGTTTCGACACCGACCGTAAATGCTGGATAGCTGATTCCGGCTTCCACAGTGAGGTTTTCCCCTTTGTGGGTGAGGCTTTAGTCGTGGACTTGGATAAACCTTTCAAGGAGAAGTTGGTGTTTACCTATGATCGTGATATTATAAACGTGTGGCGATTGGGATTGACTGATGATTTGAAAGGTTCTTATCTTACCAGCTACGGGTCTGTGAATATGAAACCCAGGTTGCTTGGCTTATTGGAAAATTTGTGTGAACTATCTAAGCAGCTTCGTCTCATCGATCTAGGAGATGGAAAAATCTGCTTTGTTAGGGCCAGGAGCTACCCGGTTGAGGAACGTACTGTAAATTCACTAGGGCTTGAGAAGGTGCGTGTTGTTATCATAGTATTCAAATATGAGTTTGATCCGAGAGCACGAGCCTTGCCCTACAAGATCCTGTCTACCCGCGCCTTTACCATCATGCCCCATTGCAAGGAATCCTGCTTTGTCCGCCTGCTTAAATGCTTTGTGCTCTAG

Protein Analysis

358

Amino Acids

40.8

Weight (kDa)

5.52

Isoelectric Point (pI)

47.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 44 - 296 1.6e-07 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018238)

Species Orthologous Gene IDs
rosa_laevigata RLG00000026445 RLG00000026447 RLG00000026453
rosa_multiflora Rmu_sc0006315.1_g000005 Rmu_sc0013545.1_g000003
rosa_roxburghii Rroxscaffold_4G00280560
rosa_rugosa Rorug01G0407600 Rorug01G0407600 Rorug01G0407700
rosa_samantha Rh1AG421800
rosa_wichuraiana Rw1G037550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 704
AasI GACNNNNNNGTC 1 cut(s) 401
AatII GACGTC 1 cut(s) 399
AccB1I GGYRCC 1 cut(s) 420
AccI GTMKAC 2 cut(s) 414, 1001
AccII CGCG 2 cut(s) 343, 1008
AciI CCGC 8 cut(s) 85, 105, 174, 341, 343, 433, 1006, 1051
AclWI GGATC 2 cut(s) 959, 988
AcoI YGGCCR 1 cut(s) 86
AcsI RAATTY 2 cut(s) 805, 907
AcuI CTGAAG 1 cut(s) 239
AcyI GRCGYC 2 cut(s) 396, 421
AfaI GTAC 1 cut(s) 901
AfiI CCNNNNNNNGG 7 cut(s) 256, 613, 628, 629, 762, 892, 1033
AflIII ACRYGT 1 cut(s) 708
AgsI TTSAA 3 cut(s) 667, 739, 952
AhlI ACTAGT 1 cut(s) 482
AjnI CCWGG 3 cut(s) 156, 782, 875
AluBI AGCT 8 cut(s) 57, 247, 300, 443, 593, 759, 829, 882
AluI AGCT 8 cut(s) 57, 247, 300, 443, 593, 759, 829, 882
Alw21I GWGCWC 3 cut(s) 249, 976, 1074
Alw26I GTCTC 3 cut(s) 347, 409, 839
AlwI GGATC 2 cut(s) 959, 988
AoxI GGCC 2 cut(s) 86, 873
ApeKI GCWGC 5 cut(s) 57, 138, 300, 430, 826
ApoI RAATTY 2 cut(s) 805, 907
ArsI GACNNNNNNTTYG 4 cut(s) 381, 413, 718, 750
AspLEI GCGC 3 cut(s) 53, 423, 1010
AspS9I GGNCC 1 cut(s) 873
AsuC2I CCSGG 1 cut(s) 887
AsuHPI GGTGA 2 cut(s) 177, 644
AsuNHI GCTAGC 1 cut(s) 53
BanI GGYRCC 1 cut(s) 420
BanII GRGCYC 1 cut(s) 249
BauI CACGAG 1 cut(s) 975
BbsI GAAGAC 2 cut(s) 33, 157
Bbv12I GWGCWC 3 cut(s) 249, 976, 1074
BbvI GCAGC 5 cut(s) 44, 125, 287, 442, 838
BccI CCATC 4 cut(s) 330, 343, 845, 1025
BceAI ACGGC 1 cut(s) 286
BciT130I CCWGG 3 cut(s) 158, 784, 877
BcnI CCSGG 1 cut(s) 887
BcoDI GTCTC 3 cut(s) 347, 409, 839
BcuI ACTAGT 1 cut(s) 482
BfaI CTAG 5 cut(s) 54, 483, 845, 914, 1075
BfoI RGCGCY 1 cut(s) 424
BglII AGATCT 2 cut(s) 364, 522
BisI GCNGC 8 cut(s) 58, 86, 106, 139, 175, 301, 431, 827
BlsI GCNGC 8 cut(s) 59, 87, 107, 140, 176, 302, 432, 828
Bme1390I CCNGG 4 cut(s) 158, 784, 877, 887
BmgT120I GGNCC 1 cut(s) 873
BmiI GGNNCC 2 cut(s) 154, 422
BmrFI CCNGG 4 cut(s) 158, 784, 877, 887
BmsI GCATC 1 cut(s) 540
BmtI GCTAGC 1 cut(s) 57
BpiI GAAGAC 2 cut(s) 33, 157
BplI GAGNNNNNCTC 2 cut(s) 351, 383
BpuEI CTTGAG 1 cut(s) 941
BpuMI CCSGG 1 cut(s) 887
Bsa29I ATCGAT 1 cut(s) 840
BsaHI GRCGYC 2 cut(s) 396, 421
BsaJI CCNNGG 4 cut(s) 156, 188, 341, 782
Bsc4I CCNNNNNNNGG 7 cut(s) 256, 613, 628, 629, 762, 892, 1033
Bse118I RCCGGY 1 cut(s) 553
Bse1I ACTGG 1 cut(s) 89
Bse3DI GCAATG 1 cut(s) 1027
BseBI CCWGG 3 cut(s) 158, 784, 877
BseCI ATCGAT 1 cut(s) 840
BseDI CCNNGG 4 cut(s) 156, 188, 341, 782
BseGI GGATG 2 cut(s) 247, 351
BseLI CCNNNNNNNGG 7 cut(s) 256, 613, 628, 629, 762, 892, 1033
BseMI GCAATG 1 cut(s) 1027
BseMII CTCAG 1 cut(s) 422
BseNI ACTGG 1 cut(s) 89
BseRI GAGGAG 1 cut(s) 375
BseXI GCAGC 5 cut(s) 44, 125, 287, 442, 838
BseYI CCCAGC 1 cut(s) 209
Bsh1236I CGCG 2 cut(s) 343, 1008
Bsh1285I CGRYCG 1 cut(s) 577
BshFI GGCC 2 cut(s) 88, 875
BshNI GGYRCC 1 cut(s) 420
BshVI ATCGAT 1 cut(s) 840
BsiEI CGRYCG 1 cut(s) 577
BsiHKAI GWGCWC 3 cut(s) 249, 976, 1074
BsiSI CCGG 4 cut(s) 250, 554, 600, 887
BslFI GGGAC 1 cut(s) 129
BslI CCNNNNNNNGG 7 cut(s) 256, 613, 628, 629, 762, 892, 1033
BsmAI GTCTC 3 cut(s) 347, 409, 839
BsmBI CGTCTC 1 cut(s) 839
BsmFI GGGAC 1 cut(s) 129
BsnI GGCC 2 cut(s) 88, 875
Bsp1286I GDGCHC 3 cut(s) 249, 976, 1074
Bsp143I GATC 6 cut(s) 364, 522, 691, 841, 964, 993
BspACI CCGC 8 cut(s) 85, 105, 174, 341, 343, 433, 1006, 1051
BspANI GGCC 2 cut(s) 88, 875
BspCNI CTCAG 1 cut(s) 421
BspDI ATCGAT 1 cut(s) 840
BspFNI CGCG 2 cut(s) 343, 1008
BspHI TCATGA 3 cut(s) 76, 325, 472
BspLI GGNNCC 2 cut(s) 154, 422
BspOI GCTAGC 1 cut(s) 57
BspPI GGATC 2 cut(s) 959, 988
BspT107I GGYRCC 1 cut(s) 420
BsrDI GCAATG 1 cut(s) 1027
BsrFI RCCGGY 1 cut(s) 553
BsrI ACTGG 1 cut(s) 89
BssAI RCCGGY 1 cut(s) 553
BssECI CCNNGG 4 cut(s) 156, 188, 341, 782
BssMI GATC 6 cut(s) 364, 522, 691, 841, 964, 993
BssNAI GTATAC 1 cut(s) 415
BssNI GRCGYC 2 cut(s) 396, 421
BssSI CACGAG 1 cut(s) 975
Bst1107I GTATAC 1 cut(s) 415
Bst2BI CACGAG 1 cut(s) 975
Bst2UI CCWGG 3 cut(s) 158, 784, 877
Bst4CI ACNGT 5 cut(s) 189, 308, 578, 611, 904
BstACI GRCGYC 2 cut(s) 396, 421
BstAPI GCANNNNNTGC 1 cut(s) 138
BstC8I GCNNGC 3 cut(s) 7, 55, 1055
BstDEI CTNAG 3 cut(s) 262, 408, 822
BstDSI CCRYGG 2 cut(s) 188, 341
BstF5I GGATG 2 cut(s) 247, 351
BstFNI CGCG 2 cut(s) 343, 1008
BstH2I RGCGCY 1 cut(s) 424
BstHHI GCGC 3 cut(s) 53, 423, 1010
BstKTI GATC 6 cut(s) 367, 525, 694, 844, 967, 996
BstMAI GTCTC 3 cut(s) 347, 409, 839
BstMBI GATC 6 cut(s) 364, 522, 691, 841, 964, 993
BstMCI CGRYCG 1 cut(s) 577
BstMWI GCNNNNNNNGC 7 cut(s) 57, 66, 114, 138, 210, 427, 1050
BstNI CCWGG 3 cut(s) 158, 784, 877
BstSCI CCNGG 4 cut(s) 156, 782, 875, 885
BstUI CGCG 2 cut(s) 343, 1008
BstV1I GCAGC 5 cut(s) 44, 125, 287, 442, 838
BstV2I GAAGAC 2 cut(s) 33, 157
BstX2I RGATCY 3 cut(s) 364, 522, 993
BstYI RGATCY 3 cut(s) 364, 522, 993
BstZ17I GTATAC 1 cut(s) 415
Bsu15I ATCGAT 1 cut(s) 840
BsuRI GGCC 2 cut(s) 88, 875
BsuTUI ATCGAT 1 cut(s) 840
BtgI CCRYGG 2 cut(s) 188, 341
BtsCI GGATG 2 cut(s) 247, 351
BtsIMutI CAGTG 2 cut(s) 406, 616
Cac8I GCNNGC 3 cut(s) 7, 55, 1055
CciI TCATGA 3 cut(s) 76, 325, 472
CfoI GCGC 3 cut(s) 53, 423, 1010
Cfr10I RCCGGY 1 cut(s) 553
Cfr13I GGNCC 1 cut(s) 873
Cfr42I CCGCGG 1 cut(s) 344
ClaI ATCGAT 1 cut(s) 840
Csp6I GTAC 1 cut(s) 900
CviAII CATG 5 cut(s) 77, 133, 326, 473, 1021
CviQI GTAC 1 cut(s) 900
DdeI CTNAG 3 cut(s) 262, 408, 822
DinI GGCGCC 1 cut(s) 422
DpnI GATC 6 cut(s) 366, 524, 693, 843, 966, 995
DpnII GATC 6 cut(s) 364, 522, 691, 841, 964, 993
DrdI GACNNNNNNGTC 1 cut(s) 401
DseDI GACNNNNNNGTC 1 cut(s) 401
EaeI YGGCCR 1 cut(s) 86
EciI GGCGGA 1 cut(s) 1040
Ecl136II GAGCTC 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 249
Eco32I GATATC 1 cut(s) 121
Eco53kI GAGCTC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 239
EcoICRI GAGCTC 1 cut(s) 247
EcoRII CCWGG 3 cut(s) 156, 782, 875
EcoRV GATATC 1 cut(s) 121
EcoT38I GRGCYC 1 cut(s) 249
EgeI GGCGCC 1 cut(s) 422
EheI GGCGCC 1 cut(s) 422
Esp3I CGTCTC 1 cut(s) 839
FaeI CATG 5 cut(s) 80, 136, 329, 476, 1024
FaqI GGGAC 1 cut(s) 129
FatI CATG 5 cut(s) 76, 132, 325, 472, 1020
FauI CCCGC 1 cut(s) 1013
FblI GTMKAC 2 cut(s) 414, 1001
Fnu4HI GCNGC 8 cut(s) 58, 86, 106, 139, 175, 301, 431, 827
FokI GGATG 2 cut(s) 254, 358
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 8 cut(s) 58, 86, 106, 139, 175, 301, 431, 827
FspBI CTAG 5 cut(s) 54, 483, 845, 914, 1075
GlaI GCGC 3 cut(s) 52, 422, 1009
GluI GCNGC 8 cut(s) 58, 86, 106, 139, 175, 301, 431, 827
GsaI CCCAGC 1 cut(s) 213
HaeII RGCGCY 1 cut(s) 424
HaeIII GGCC 2 cut(s) 88, 875
HapII CCGG 4 cut(s) 250, 554, 600, 887
HhaI GCGC 3 cut(s) 53, 423, 1010
Hin1I GRCGYC 2 cut(s) 396, 421
Hin1II CATG 5 cut(s) 80, 136, 329, 476, 1024
Hin6I GCGC 3 cut(s) 51, 421, 1008
HinP1I GCGC 3 cut(s) 51, 421, 1008
HinfI GANTC 3 cut(s) 62, 596, 1037
HpaII CCGG 4 cut(s) 250, 554, 600, 887
HphI GGTGA 2 cut(s) 177, 644
Hpy166II GTNNAC 7 cut(s) 98, 415, 534, 649, 684, 815, 1002
Hpy188I TCNGA 2 cut(s) 380, 969
Hpy188III TCNNGA 4 cut(s) 77, 326, 473, 695
Hpy8I GTNNAC 7 cut(s) 98, 415, 534, 649, 684, 815, 1002
HpyAV CCTTC 1 cut(s) 919
HpyCH4III ACNGT 5 cut(s) 189, 308, 578, 611, 904
HpyCH4IV ACGT 3 cut(s) 396, 708, 898
HpyCH4V TGCA 5 cut(s) 132, 204, 303, 314, 1032
HpyF10VI GCNNNNNNNGC 7 cut(s) 57, 66, 114, 138, 210, 427, 1050
HpyF3I CTNAG 3 cut(s) 262, 408, 822
HpySE526I ACGT 3 cut(s) 396, 708, 898
Hsp92I GRCGYC 2 cut(s) 396, 421
Hsp92II CATG 5 cut(s) 80, 136, 329, 476, 1024
HspAI GCGC 3 cut(s) 51, 421, 1008
KasI GGCGCC 1 cut(s) 420
KspI CCGCGG 1 cut(s) 344
Kzo9I GATC 6 cut(s) 364, 522, 691, 841, 964, 993
LmnI GCTCC 4 cut(s) 14, 158, 252, 879
Lsp1109I GCAGC 5 cut(s) 44, 125, 287, 442, 838
LweI GCATC 1 cut(s) 540
MaeI CTAG 5 cut(s) 54, 483, 845, 914, 1075
MaeII ACGT 3 cut(s) 396, 708, 898
MaeIII GTNAC 2 cut(s) 14, 392
MalI GATC 6 cut(s) 366, 524, 693, 843, 966, 995
MboI GATC 6 cut(s) 364, 522, 691, 841, 964, 993
MboII GAAGA 2 cut(s) 38, 157
MflI RGATCY 3 cut(s) 364, 522, 993
MhlI GDGCHC 3 cut(s) 249, 976, 1074
MluCI AATT 2 cut(s) 805, 907
Mly113I GGCGCC 1 cut(s) 421
MmeI TCCRAC 1 cut(s) 270
MnlI CCTC 6 cut(s) 232, 353, 459, 607, 628, 886
MseI TTAA 1 cut(s) 1059
MspA1I CMGCKG 2 cut(s) 343, 433
MspI CCGG 4 cut(s) 250, 554, 600, 887
MspR9I CCNGG 4 cut(s) 158, 784, 877, 887
MvaI CCWGG 3 cut(s) 158, 784, 877
MvnI CGCG 2 cut(s) 343, 1008
MwoI GCNNNNNNNGC 7 cut(s) 57, 66, 114, 138, 210, 427, 1050
NarI GGCGCC 1 cut(s) 421
NciI CCSGG 1 cut(s) 887
NdeII GATC 6 cut(s) 364, 522, 691, 841, 964, 993
NheI GCTAGC 1 cut(s) 53
NlaIII CATG 5 cut(s) 80, 136, 329, 476, 1024
NlaIV GGNNCC 2 cut(s) 154, 422
NmuCI GTSAC 2 cut(s) 14, 392
PagI TCATGA 3 cut(s) 76, 325, 472
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PfeI GAWTC 3 cut(s) 62, 596, 1037
PkrI GCNGC 8 cut(s) 59, 87, 107, 140, 176, 302, 432, 828
PluTI GGCGCC 1 cut(s) 424
PsiI TTATAA 1 cut(s) 704
Psp124BI GAGCTC 1 cut(s) 249
Psp6I CCWGG 3 cut(s) 156, 782, 875
PspFI CCCAGC 1 cut(s) 209
PspGI CCWGG 3 cut(s) 156, 782, 875
PspN4I GGNNCC 2 cut(s) 154, 422
PspPI GGNCC 1 cut(s) 873
PsuI RGATCY 3 cut(s) 364, 522, 993
RsaI GTAC 1 cut(s) 901
RsaNI GTAC 1 cut(s) 900
SacI GAGCTC 1 cut(s) 249
SacII CCGCGG 1 cut(s) 344
SaqAI TTAA 1 cut(s) 1059
SatI GCNGC 8 cut(s) 58, 86, 106, 139, 175, 301, 431, 827
Sau3AI GATC 6 cut(s) 364, 522, 691, 841, 964, 993
Sau96I GGNCC 1 cut(s) 873
ScrFI CCNGG 4 cut(s) 158, 784, 877, 887
SduI GDGCHC 3 cut(s) 249, 976, 1074
SfaNI GCATC 1 cut(s) 540
SfoI GGCGCC 1 cut(s) 422
Sfr303I CCGCGG 1 cut(s) 344
SgrBI CCGCGG 1 cut(s) 344
SmlI CTYRAG 1 cut(s) 920
SmoI CTYRAG 1 cut(s) 920
SpeI ACTAGT 1 cut(s) 482
Sse9I AATT 2 cut(s) 805, 907
SsiI CCGC 8 cut(s) 85, 105, 174, 341, 343, 433, 1006, 1051
SspDI GGCGCC 1 cut(s) 420
SspMI CTAG 5 cut(s) 54, 483, 845, 914, 1075
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 4 cut(s) 156, 782, 875, 885
TaaI ACNGT 5 cut(s) 189, 308, 578, 611, 904
TaiI ACGT 3 cut(s) 399, 711, 901
TaqI TCGA 2 cut(s) 567, 840
TasI AATT 2 cut(s) 805, 907
TauI GCSGC 3 cut(s) 88, 108, 177
TfiI GAWTC 3 cut(s) 62, 596, 1037
Tru1I TTAA 1 cut(s) 1059
Tru9I TTAA 1 cut(s) 1059
TscAI CASTG 2 cut(s) 406, 616
TseFI GTSAC 2 cut(s) 14, 392
TseI GCWGC 5 cut(s) 57, 138, 300, 430, 826
Tsp45I GTSAC 2 cut(s) 14, 392
TspDTI ATGAA 2 cut(s) 39, 791
TspGWI ACGGA 1 cut(s) 527
TspRI CASTG 2 cut(s) 406, 616
XapI RAATTY 2 cut(s) 805, 907
XmiI GTMKAC 2 cut(s) 414, 1001
XspI CTAG 5 cut(s) 54, 483, 845, 914, 1075
ZraI GACGTC 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.