RLG00000027456

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
11847038 .. 11850720
3683 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027456

Sequence Viewer

Length: 1953 bp
ATGGTACTCAAGGAAATTCTTGATCCTGAGGGACCAATCCTTCAAAAGTGGAATCTGATATTTGTAATATCATGTCTCTTTGCTGTGTTACTGGATCCTTTGTTCCTCTACACTCCTCTAATCAACCAAGACATGAAGTGCATTGGACTAGACAAAAAGTTGAAGATAGCAGCTGTGGTTTTTCGATCGATCACAGATTTTGTTTATATAGTGAAAATCATTTTTCATGTTTATAAACTAGAGAAAGTAACAGTTATGGCTCTATGGCAGTCATCCATCCTAGTTGACGTTTTAGCTGTTCTCCCTATTCCACAGGTAGTAATTCTCATTTTCTTTAGGGGCTCGAGATCTTTGGAAGCAATGAAGTTTATGAACTTTCTAGTTCTCGTCCAATACGTTCCACGAGTTCTGCGCATCTATCTCGCATGTAAGGAGTTCAAAAATTCTCCAAAAGGAAAGTTTGGATTATGGATAAAAGGTGGACTCAATTTCTTCATGTACACTCTTGCTAGTCATATATTTGGAGCCTTTTGGTACTTTTTCTCTATTCAACGAATGTTGACATGCTGGCGATATGCTTGTCGAAGTGAAGATGGATGTAGACCTAGTACTTTTGACTGTCATGATCATCGTAGCAACAGATATATCAGATTGCTAAATGATAAATGTCCTACAAATCCATCGGATTCAACGCTCTTTGATTTTGGCATATTTCTCGATGCTCTTCAATCAAGTATAGTTGGATCAAAAAATTATTCACAAAAGTTGTCGAAATGTTTTTGGTGGGGTCTACGAAACCTGAGAATTTTCTTAAAGCTCCTAAGCCTCTCTCGGTATTTATTTCTCAATATCCTTTCGATTCTTCCCTTGCAACTTCAAAGGGATATTTTAGTTTATAAGGAGAAGTTGGAAGAGGAAGGTCGAAAGATAGAGTTGTGGTTATCTGAAAATCGCCTCCCAATGCGTTTAAAGTCGGAGATCATGGAAAAGGTGGTGCAACAAAAACTTGAAGAAAATAGGGATGTTAATGTGGATAATTTCCTATCTATTCTACCAGAGGAACGTCGGAGCTATATCGAAAGTTATAAACAGAAATTGCACGAGAAAGACTTAGAAGTGACATTGCTTGAAAGAATGGATGAAAGAGTGTTGAAAGCGATTTGTGAGAATCTTCAGCCTATAGAGTTTCCTGCCAAACTCGTCATTATGCAAGAAGGTCAACCAATTGAAGAACTGTTCTTCATTGTAGTCGGATCTGTACGACGGCATTCAAGAAATAGGCCGATGTTCCAGGAATACGAAACTGAATTATGCGGAGAAGAACTTCTGGTTTGGCCATTAACGACCTCCTTTCCTGCCGTATTACCCAGAGCAACCAAGACAGTTATGGTGGGTGAAGGTTTTAGTGCCCTTCTCCTTACGGCCAGTGATATAAAGAGTGTCGGCTCTAAATTCAGGCCACAGTGGGATCACATTACTTCTTACTGGTTGACTATGCTAAAGAAAGTGCCAAAGCTTCAATATATGGATGAAGAAGTGTTGAAAGAATTCTTACCACATCTTAACAAGCAGGATCAATTTGCAGCTAGATCCTCGTATGGTATTCAGGCGAATGTACCACTTAAATCCATGTACTTCATCACAGAGGGATCTCTAAAATTTACAAAAAGTGATAACGGTGATGAGGAGTTTTTTCGTTCTGCAGGAGAATTCTATGGAGAAGAACTCCTTGATTGGGTATTAGATACGTCCTTTCCTGCCATAACCCCCATTTCCACCCATTCTGCTCTTTGCAGCGATCACAATGAAGCTACCATGTTGGCTATCACCGCTGAGGACTTAAAGAGTGTAGCTTCTAAATTCAGCTCGCACTTCAGTACCCTTCAAACAGATTCTCAATTAGATCTTTCAACTTTTGTCAACTTGACTAGGCTAAAGAAAGTAAGTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

651

Amino Acids

75.4

Weight (kDa)

8.27

Isoelectric Point (pI)

48.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 234, 897, 1086
Acc16I TGCGCA 1 cut(s) 413
AccI GTMKAC 2 cut(s) 601, 790
AciI CCGC 2 cut(s) 1314, 1830
AclWI GGATC 9 cut(s) 17, 89, 102, 751, 1261, 1476, 1581, 1584, 1657
AcoI YGGCCR 2 cut(s) 1334, 1422
AcsI RAATTY 8 cut(s) 15, 442, 804, 1451, 1547, 1658, 1709, 1859
AcuI CTGAAG 2 cut(s) 1157, 1858
AfaI GTAC 8 cut(s) 6, 500, 536, 610, 1260, 1617, 1634, 1879
AfiI CCNNNNNNNGG 1 cut(s) 1735
AjnI CCWGG 1 cut(s) 1290
AloI GAACNNNNNNTCC 2 cut(s) 86, 118
AluBI AGCT 9 cut(s) 173, 296, 817, 1071, 1516, 1586, 1811, 1853, 1866
AluI AGCT 9 cut(s) 173, 296, 817, 1071, 1516, 1586, 1811, 1853, 1866
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 9 cut(s) 17, 89, 102, 751, 1261, 1476, 1581, 1584, 1657
Ama87I CYCGRG 1 cut(s) 343
AoxI GGCC 4 cut(s) 1280, 1334, 1422, 1457
ApeKI GCWGC 3 cut(s) 170, 1583, 1794
ApoI RAATTY 8 cut(s) 15, 442, 804, 1451, 1547, 1658, 1709, 1859
Asp700I GAANNNNTTC 2 cut(s) 1323, 1547
AspLEI GCGC 1 cut(s) 414
AspS9I GGNCC 1 cut(s) 32
AsuHPI GGTGA 3 cut(s) 1406, 1691, 1819
AvaI CYCGRG 1 cut(s) 343
AvaII GGWCC 1 cut(s) 32
AxyI CCTNAGG 1 cut(s) 27
BaeGI GKGCMC 1 cut(s) 1411
BaeI ACNNNNGTAYC 2 cut(s) 1861, 1894
BalI TGGCCA 1 cut(s) 1336
BamHI GGATCC 1 cut(s) 94
BanII GRGCYC 1 cut(s) 344
BauI CACGAG 2 cut(s) 402, 1100
BbvCI CCTCAGC 1 cut(s) 1833
BbvI GCAGC 3 cut(s) 182, 1595, 1806
BccI CCATC 3 cut(s) 284, 587, 688
BceAI ACGGC 3 cut(s) 1280, 1343, 1437
BcgI CGANNNNNNTGC 4 cut(s) 403, 437, 697, 731
BciT130I CCWGG 1 cut(s) 1292
BclI TGATCA 1 cut(s) 625
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 9 cut(s) 149, 239, 281, 380, 510, 606, 1587, 1929, 1951
BfmI CTRYAG 2 cut(s) 1179, 1701
BglII AGATCT 2 cut(s) 347, 1903
BisI GCNGC 3 cut(s) 171, 1584, 1795
BlsI GCNGC 3 cut(s) 172, 1585, 1796
BmcAI AGTACT 1 cut(s) 610
Bme1390I CCNGG 1 cut(s) 1292
Bme18I GGWCC 1 cut(s) 32
BmeT110I CYCGRG 1 cut(s) 343
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 3 cut(s) 33, 96, 526
BmrFI CCNGG 1 cut(s) 1292
BmsI GCATC 2 cut(s) 423, 709
BplI GAGNNNNNCTC 2 cut(s) 1710, 1742
Bpu10I CCTNAGC 2 cut(s) 821, 1833
Bsa29I ATCGAT 1 cut(s) 188
Bsc4I CCNNNNNNNGG 1 cut(s) 1735
Bse1I ACTGG 3 cut(s) 96, 1425, 1490
Bse21I CCTNAGG 1 cut(s) 27
Bse3DI GCAATG 2 cut(s) 366, 1121
BseBI CCWGG 1 cut(s) 1292
BseCI ATCGAT 1 cut(s) 188
BseGI GGATG 6 cut(s) 272, 276, 602, 1027, 1144, 1534
BseLI CCNNNNNNNGG 1 cut(s) 1735
BseMI GCAATG 2 cut(s) 366, 1121
BseMII CTCAG 3 cut(s) 18, 791, 1824
BseNI ACTGG 3 cut(s) 96, 1425, 1490
BseRI GAGGAG 2 cut(s) 105, 1700
BseSI GKGCMC 1 cut(s) 1411
BseXI GCAGC 3 cut(s) 182, 1595, 1806
Bsh1285I CGRYCG 1 cut(s) 188
BshFI GGCC 4 cut(s) 1282, 1336, 1424, 1459
BshVI ATCGAT 1 cut(s) 188
BsiEI CGRYCG 1 cut(s) 188
BsiHKCI CYCGRG 1 cut(s) 343
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 1735
BsmAI GTCTC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 45
BsmI GAATGC 1 cut(s) 1267
BsnI GGCC 4 cut(s) 1282, 1336, 1424, 1459
BsoBI CYCGRG 1 cut(s) 343
Bsp1286I GDGCHC 2 cut(s) 344, 1411
Bsp1407I TGTACA 1 cut(s) 498
BspACI CCGC 2 cut(s) 1314, 1830
BspANI GGCC 4 cut(s) 1282, 1336, 1424, 1459
BspCNI CTCAG 3 cut(s) 19, 792, 1825
BspDI ATCGAT 1 cut(s) 188
BspHI TCATGA 1 cut(s) 622
BspLI GGNNCC 3 cut(s) 33, 96, 526
BspMAI CTGCAG 1 cut(s) 1705
BspPI GGATC 9 cut(s) 17, 89, 102, 751, 1261, 1476, 1581, 1584, 1657
BspQI GCTCTTC 1 cut(s) 729
BsrDI GCAATG 2 cut(s) 366, 1121
BsrGI TGTACA 1 cut(s) 498
BsrI ACTGG 3 cut(s) 96, 1425, 1490
BssSI CACGAG 2 cut(s) 402, 1100
Bst2BI CACGAG 2 cut(s) 402, 1100
Bst2UI CCWGG 1 cut(s) 1292
Bst4CI ACNGT 6 cut(s) 253, 620, 1236, 1384, 1464, 1679
Bst6I CTCTTC 2 cut(s) 729, 906
BstAUI TGTACA 1 cut(s) 498
BstC8I GCNNGC 2 cut(s) 569, 1868
BstDEI CTNAG 5 cut(s) 27, 800, 821, 1111, 1833
BstF5I GGATG 6 cut(s) 272, 276, 602, 1027, 1144, 1534
BstHHI GCGC 1 cut(s) 414
BstMAI GTCTC 1 cut(s) 80
BstMCI CGRYCG 1 cut(s) 188
BstMWI GCNNNNNNNGC 1 cut(s) 1829
BstNI CCWGG 1 cut(s) 1292
BstNSI RCATGY 2 cut(s) 429, 567
BstSCI CCNGG 1 cut(s) 1290
BstSFI CTRYAG 2 cut(s) 1179, 1701
BstSLI GKGCMC 1 cut(s) 1411
BstV1I GCAGC 3 cut(s) 182, 1595, 1806
BstX2I RGATCY 6 cut(s) 94, 347, 1253, 1589, 1649, 1903
BstYI RGATCY 6 cut(s) 94, 347, 1253, 1589, 1649, 1903
Bsu15I ATCGAT 1 cut(s) 188
Bsu36I CCTNAGG 1 cut(s) 27
BsuRI GGCC 4 cut(s) 1282, 1336, 1424, 1459
BsuTUI ATCGAT 1 cut(s) 188
BtsCI GGATG 6 cut(s) 272, 276, 602, 1027, 1144, 1534
BtsIMutI CAGTG 2 cut(s) 1432, 1469
Cac8I GCNNGC 2 cut(s) 569, 1868
CciI TCATGA 1 cut(s) 622
CfoI GCGC 1 cut(s) 414
Cfr13I GGNCC 1 cut(s) 32
ClaI ATCGAT 1 cut(s) 188
Csp6I GTAC 8 cut(s) 5, 499, 535, 609, 1259, 1616, 1633, 1878
CviQI GTAC 8 cut(s) 5, 499, 535, 609, 1259, 1616, 1633, 1878
DdeI CTNAG 5 cut(s) 27, 800, 821, 1111, 1833
DraI TTTAAA 1 cut(s) 969
EaeI YGGCCR 2 cut(s) 1334, 1422
Eam1104I CTCTTC 2 cut(s) 729, 906
EarI CTCTTC 2 cut(s) 729, 906
Eco24I GRGCYC 1 cut(s) 344
Eco47I GGWCC 1 cut(s) 32
Eco57I CTGAAG 2 cut(s) 1157, 1858
Eco81I CCTNAGG 1 cut(s) 27
Eco88I CYCGRG 1 cut(s) 343
EcoRI GAATTC 2 cut(s) 1547, 1709
EcoRII CCWGG 1 cut(s) 1290
EcoT38I GRGCYC 1 cut(s) 344
FalI AAGNNNNNCTT 2 cut(s) 1713, 1745
FaqI GGGAC 1 cut(s) 45
FbaI TGATCA 1 cut(s) 625
FblI GTMKAC 2 cut(s) 601, 790
Fnu4HI GCNGC 3 cut(s) 171, 1584, 1795
FokI GGATG 6 cut(s) 259, 263, 609, 1034, 1151, 1541
FriOI GRGCYC 1 cut(s) 344
Fsp4HI GCNGC 3 cut(s) 171, 1584, 1795
FspBI CTAG 9 cut(s) 149, 239, 281, 380, 510, 606, 1587, 1929, 1951
FspI TGCGCA 1 cut(s) 413
GlaI GCGC 1 cut(s) 413
GluI GCNGC 3 cut(s) 171, 1584, 1795
HaeIII GGCC 4 cut(s) 1282, 1336, 1424, 1459
HhaI GCGC 1 cut(s) 414
Hin6I GCGC 1 cut(s) 412
HinP1I GCGC 1 cut(s) 412
HincII GTYRAC 5 cut(s) 286, 561, 1220, 1491, 1921
HindII GTYRAC 5 cut(s) 286, 561, 1220, 1491, 1921
HindIII AAGCTT 1 cut(s) 1514
HinfI GANTC 6 cut(s) 52, 483, 686, 859, 1168, 1892
HphI GGTGA 3 cut(s) 1406, 1691, 1819
Hpy166II GTNNAC 9 cut(s) 286, 482, 501, 561, 602, 791, 1220, 1491, 1921
Hpy188I TCNGA 7 cut(s) 57, 650, 685, 946, 976, 1068, 1253
Hpy188III TCNNGA 6 cut(s) 20, 26, 345, 623, 716, 1272
Hpy8I GTNNAC 9 cut(s) 286, 482, 501, 561, 602, 791, 1220, 1491, 1921
Hpy99I CGWCG 2 cut(s) 1068, 1266
HpyAV CCTTC 6 cut(s) 50, 911, 1208, 1391, 1421, 1892
HpyCH4III ACNGT 6 cut(s) 253, 620, 1236, 1384, 1464, 1679
HpyCH4IV ACGT 4 cut(s) 288, 396, 1063, 1748
HpyCH4V TGCA 8 cut(s) 141, 871, 997, 1099, 1210, 1583, 1703, 1794
HpyF10VI GCNNNNNNNGC 1 cut(s) 1829
HpyF3I CTNAG 5 cut(s) 27, 800, 821, 1111, 1833
HpySE526I ACGT 4 cut(s) 288, 396, 1063, 1748
HspAI GCGC 1 cut(s) 412
Ksp22I TGATCA 1 cut(s) 625
LguI GCTCTTC 1 cut(s) 729
LmnI GCTCC 3 cut(s) 524, 822, 1068
Lsp1109I GCAGC 3 cut(s) 182, 1595, 1806
LweI GCATC 2 cut(s) 423, 709
MaeI CTAG 9 cut(s) 149, 239, 281, 380, 510, 606, 1587, 1929, 1951
MaeII ACGT 4 cut(s) 288, 396, 1063, 1748
MaeIII GTNAC 3 cut(s) 87, 247, 1117
MfeI CAATTG 1 cut(s) 1224
MflI RGATCY 6 cut(s) 94, 347, 1253, 1589, 1649, 1903
MhlI GDGCHC 2 cut(s) 344, 1411
MlsI TGGCCA 1 cut(s) 1336
MluNI TGGCCA 1 cut(s) 1336
MlyI GAGTC 1 cut(s) 477
MmeI TCCRAC 5 cut(s) 721, 888, 954, 1046, 1231
Mox20I TGGCCA 1 cut(s) 1336
MroXI GAANNNNTTC 2 cut(s) 1323, 1547
MscI TGGCCA 1 cut(s) 1336
MseI TTAA 7 cut(s) 812, 968, 1026, 1340, 1563, 1623, 1841
Msp20I TGGCCA 1 cut(s) 1336
MspA1I CMGCKG 2 cut(s) 173, 1832
MspR9I CCNGG 1 cut(s) 1292
MunI CAATTG 1 cut(s) 1224
Mva1269I GAATGC 1 cut(s) 1267
MvaI CCWGG 1 cut(s) 1292
MwoI GCNNNNNNNGC 1 cut(s) 1829
NlaIV GGNNCC 3 cut(s) 33, 96, 526
NmuCI GTSAC 1 cut(s) 1117
NsbI TGCGCA 1 cut(s) 413
NspI RCATGY 2 cut(s) 429, 567
PaeR7I CTCGAG 1 cut(s) 343
PagI TCATGA 1 cut(s) 622
PciSI GCTCTTC 1 cut(s) 729
PcsI WCGNNNNNNNCGW 1 cut(s) 393
PctI GAATGC 1 cut(s) 1267
PdmI GAANNNNTTC 2 cut(s) 1323, 1547
PfeI GAWTC 5 cut(s) 52, 686, 859, 1168, 1892
PfoI TCCNGGA 1 cut(s) 1290
PkrI GCNGC 3 cut(s) 172, 1585, 1796
Ple19I CGATCG 1 cut(s) 188
PleI GAGTC 1 cut(s) 477
PpsI GAGTC 1 cut(s) 477
PsiI TTATAA 3 cut(s) 234, 897, 1086
Psp6I CCWGG 1 cut(s) 1290
PspGI CCWGG 1 cut(s) 1290
PspN4I GGNNCC 3 cut(s) 33, 96, 526
PspPI GGNCC 1 cut(s) 32
PstI CTGCAG 1 cut(s) 1705
PsuI RGATCY 6 cut(s) 94, 347, 1253, 1589, 1649, 1903
PvuI CGATCG 1 cut(s) 188
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 8 cut(s) 6, 500, 536, 610, 1260, 1617, 1634, 1879
RsaNI GTAC 8 cut(s) 5, 499, 535, 609, 1259, 1616, 1633, 1878
SapI GCTCTTC 1 cut(s) 729
SaqAI TTAA 7 cut(s) 812, 968, 1026, 1340, 1563, 1623, 1841
SatI GCNGC 3 cut(s) 171, 1584, 1795
Sau96I GGNCC 1 cut(s) 32
ScaI AGTACT 1 cut(s) 610
SchI GAGTC 1 cut(s) 477
ScrFI CCNGG 1 cut(s) 1292
SduI GDGCHC 2 cut(s) 344, 1411
SfaNI GCATC 2 cut(s) 423, 709
SfcI CTRYAG 2 cut(s) 1179, 1701
Sfr274I CTCGAG 1 cut(s) 343
SinI GGWCC 1 cut(s) 32
SlaI CTCGAG 1 cut(s) 343
SmlI CTYRAG 2 cut(s) 8, 343
SmoI CTYRAG 2 cut(s) 8, 343
SsiI CCGC 2 cut(s) 1314, 1830
SspMI CTAG 9 cut(s) 149, 239, 281, 380, 510, 606, 1587, 1929, 1951
StyD4I CCNGG 1 cut(s) 1290
TaaI ACNGT 6 cut(s) 253, 620, 1236, 1384, 1464, 1679
TaiI ACGT 4 cut(s) 291, 399, 1066, 1751
TaqI TCGA 9 cut(s) 184, 188, 344, 583, 717, 770, 857, 922, 1077
TatI WGTACW 3 cut(s) 498, 608, 1632
TfiI GAWTC 5 cut(s) 52, 686, 859, 1168, 1892
Tru1I TTAA 7 cut(s) 812, 968, 1026, 1340, 1563, 1623, 1841
Tru9I TTAA 7 cut(s) 812, 968, 1026, 1340, 1563, 1623, 1841
TscAI CASTG 2 cut(s) 1432, 1469
TseFI GTSAC 1 cut(s) 1117
TseI GCWGC 3 cut(s) 170, 1583, 1794
Tsp45I GTSAC 1 cut(s) 1117
TspRI CASTG 2 cut(s) 1432, 1469
VpaK11BI GGWCC 1 cut(s) 32
XapI RAATTY 8 cut(s) 15, 442, 804, 1451, 1547, 1658, 1709, 1859
XceI RCATGY 2 cut(s) 429, 567
XcmI CCANNNNNNNNNTGG 1 cut(s) 1384
XhoI CTCGAG 1 cut(s) 343
XmiI GTMKAC 2 cut(s) 601, 790
XmnI GAANNNNTTC 2 cut(s) 1323, 1547
XspI CTAG 9 cut(s) 149, 239, 281, 380, 510, 606, 1587, 1929, 1951
ZrmI AGTACT 1 cut(s) 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.