Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000112.1

Orthogroup ID

OG0009717

Physical Location & Seq

Genomic Coordinates Reverse (-)

126161 .. 128517

Gene Structure 2357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000112.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1860 bp

atgtatatgcaggtggaatcagcaagtaaagagcaactacgatggaagacagaacttgaaaatatgatgagaactgaaagaaagatgagaattgaacggagcaagggtccggaggtagaacaatggctagccaaaaatggtctccctatgcgtttaatgcccgagataatggaaaaggtagtacaagtggatttagaacaaaacagggatgttgatgtggagaatatcctttcgattcttcccttgcaacttcaaagggatattttagtttataaggagaagttggaagaggaaggtcgaaagatagagttgtggttatctgaaaatcgcctcccaatgcgtttaaagtcggagatcatggaaaaggtggtgcaacaaaaacgtgaagaaaatagggatgttcatgtggataatttcctatctattctaccagaggaacgtcggaactatatcgaaagttacaaacggaaattgcaagagaaagacttagaagttggctcgtggttatctaaaaatggcatccccgtggatacaaagtcacagatcatggagaaggttcaagtagaacttgaagaaaacagggatgtggaagtgaagaatatcctctccattcttccttcagatctccaaagacgtcttgaatggtatatgcctttgagtaggctgaagcgggtaacattgcttgaaagaatggatgaaagagtgttgaacgcgatttgtgagaatcttcagcctatagagtttccagccaaactcgtcattatgcaagaggatcaaccaattgaagatctgttcttcattgtagtcggatctgtacgacggcattcgagaaataggccgatgttccaggaatacgaaactgaattatgcggagaagaacttctggtttggccattaacaacctcctttcctgccgtattacccagagcaaccaagaccgttatggtgggtgaaggttttagtgcccttctccttacggccagtgatataaagagtgtcggctctaaattcagaccacagtgggatctcattacttcttactggttgactatgctaaagaaagtgccaaagcttcaatatatggatgaagaagttttgaaagaattcttaccgcatcttaacaagcaggatcaatttgcagctagatcctcctatggtattcaggagaatgtaccacttaaatccatgtacttcatcacagagggatctctaaaatttacaaaaagtgataacggtgatgaggtgttttttcgttctacaggggaattctatggagaagaactcctagattgggtattagatacgtcctttcctgccataacccccatttccacccattctgctctttgcagcgatcatattaatgaagctactgtgttggctatcaccgccgaggacttaaagagtgtagcttctaaattcagctcgcacttcagcacccttcaaacggattctcaatttgatctttcaacttttgtcaacttgactaggctaaagaaagtgccaaaacttcaaactatggacgaagaagttttgaaagcaatctctgagcatcttataaccaaggtgtttaattatctgaagatcattgaagagggaaaaccacttcatatgatgttattcattgtgaagggaaatgcatacctagagaagaaacatagcacagatacagtgatgctaaagcctggacaattctatggagaagaactgctagattggccatcatggacctcttttcctaccatgcccttatcaatgttcactgtcaaagtacaccatggagaagctgttgaattcctcgttctcatggccaacgatctggagaaagtagtgtctaaattcaggtcgcatttcagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

619

Amino Acids

72.24

Weight (kDa)

5.52

Isoelectric Point (pI)

50.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009717)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20710 FvH4_7g20710 FvH4_7g20710 FvH4_7g20710 FvH4_7g20710 FvH4_7g20740 FvH4_7g20740 FvH4_7g20740
rosa_chinensis	RchiOBHm_Chr1g0364861 RchiOBHm_Chr1g0364961
rosa_laevigata	RLG00000027456
rosa_multiflora	Rmu_ssc0000112.1_g000024
rosa_roxburghii	Rroxscaffold_4G00291640 Rroxscaffold_4G00292050
rosa_rugosa	Rorug01G0318600 Rorug01G0318600 Rorug01G0318600
rosa_samantha	Rh1AG327500 Rh1BG288700 Rh1CG305400 Rh1DG320300
rosa_wichuraiana	Rw1G029020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	273, 1559
AatII	GACGTC	1 cut(s)	637
AccII	CGCG	1 cut(s)	713
AccIII	TCCGGA	1 cut(s)	109
AciI	CCGC	4 cut(s)	670, 870, 1112, 1389
AclWI	GGATC	6 cut(s)	780, 817, 1032, 1137, 1140, 1213
AcoI	YGGCCR	4 cut(s)	890, 978, 1718, 1809
AcsI	RAATTY	7 cut(s)	1007, 1103, 1214, 1265, 1418, 1793, 1838
AcuI	CTGAAG	5 cut(s)	603, 686, 713, 1417, 1601
AcyI	GRCGYC	1 cut(s)	634
AfaI	GTAC	5 cut(s)	183, 816, 1173, 1190, 1773
AfiI	CCNNNNNNNGG	2 cut(s)	1291, 1447
AjnI	CCWGG	2 cut(s)	846, 1684
AluBI	AGCT	7 cut(s)	1072, 1142, 1370, 1412, 1425, 1787, 1857
AluI	AGCT	7 cut(s)	1072, 1142, 1370, 1412, 1425, 1787, 1857
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	6 cut(s)	780, 817, 1032, 1137, 1140, 1213
Ama87I	CYCGRG	1 cut(s)	161
Aor13HI	TCCGGA	1 cut(s)	109
AoxI	GGCC	5 cut(s)	836, 890, 978, 1718, 1809
ApeKI	GCWGC	2 cut(s)	1139, 1350
ApoI	RAATTY	7 cut(s)	1007, 1103, 1214, 1265, 1418, 1793, 1838
AseI	ATTAAT	1 cut(s)	1362
Asp700I	GAANNNNTTC	2 cut(s)	879, 1103
AspS9I	GGNCC	2 cut(s)	107, 1728
AsuHPI	GGTGA	3 cut(s)	962, 1247, 1378
AsuNHI	GCTAGC	1 cut(s)	127
AvaI	CYCGRG	1 cut(s)	161
AvaII	GGWCC	2 cut(s)	107, 1728
BaeGI	GKGCMC	1 cut(s)	967
BalI	TGGCCA	3 cut(s)	892, 1720, 1811
BauI	CACGAG	1 cut(s)	499
BbsI	GAAGAC	1 cut(s)	53
BbvI	GCAGC	2 cut(s)	1151, 1362
BccI	CCATC	2 cut(s)	36, 1729
BceAI	ACGGC	3 cut(s)	836, 899, 993
BciT130I	CCWGG	2 cut(s)	848, 1686
BciVI	GTATCC	1 cut(s)	523
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	7 cut(s)	128, 1143, 1286, 1488, 1646, 1712, 1858
BfmI	CTRYAG	2 cut(s)	735, 1257
BfuI	GTATCC	1 cut(s)	523
BglII	AGATCT	2 cut(s)	622, 787
BisI	GCNGC	2 cut(s)	1140, 1351
BlsI	GCNGC	2 cut(s)	1141, 1352
Bme1390I	CCNGG	2 cut(s)	848, 1686
Bme18I	GGWCC	2 cut(s)	107, 1728
BmeT110I	CYCGRG	1 cut(s)	161
BmgT120I	GGNCC	2 cut(s)	107, 1728
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	2 cut(s)	848, 1686
BmsI	GCATC	4 cut(s)	528, 1123, 1561, 1665
BmtI	GCTAGC	1 cut(s)	131
BpiI	GAAGAC	1 cut(s)	53
BplI	GAGNNNNNCTC	2 cut(s)	1266, 1298
BpmI	CTGGAG	1 cut(s)	1841
BsaHI	GRCGYC	1 cut(s)	634
BsaI	GGTCTC	1 cut(s)	146
BsaJI	CCNNGG	4 cut(s)	525, 1392, 1563, 1777
BsaWI	WCCGGW	1 cut(s)	109
BsaXI	ACNNNNNCTCC	4 cut(s)	91, 121, 1773, 1803
Bsc4I	CCNNNNNNNGG	2 cut(s)	1291, 1447
Bse1I	ACTGG	2 cut(s)	981, 1046
Bse3DI	GCAATG	1 cut(s)	677
BseAI	TCCGGA	1 cut(s)	109
BseBI	CCWGG	2 cut(s)	848, 1686
BseDI	CCNNGG	4 cut(s)	525, 1392, 1563, 1777
BseGI	GGATG	6 cut(s)	214, 403, 519, 589, 700, 1090
BseLI	CCNNNNNNNGG	2 cut(s)	1291, 1447
BseMI	GCAATG	1 cut(s)	677
BseMII	CTCAG	1 cut(s)	1539
BseNI	ACTGG	2 cut(s)	981, 1046
BseSI	GKGCMC	1 cut(s)	967
BseXI	GCAGC	2 cut(s)	1151, 1362
Bsh1236I	CGCG	1 cut(s)	713
BshFI	GGCC	5 cut(s)	838, 892, 980, 1720, 1811
BsiHKCI	CYCGRG	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	110
BslI	CCNNNNNNNGG	2 cut(s)	1291, 1447
BsmAI	GTCTC	1 cut(s)	146
BsmI	GAATGC	1 cut(s)	823
BsnI	GGCC	5 cut(s)	838, 892, 980, 1720, 1811
Bso31I	GGTCTC	1 cut(s)	146
BsoBI	CYCGRG	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	967
Bsp13I	TCCGGA	1 cut(s)	109
Bsp19I	CCATGG	1 cut(s)	1777
BspACI	CCGC	4 cut(s)	670, 870, 1112, 1389
BspANI	GGCC	5 cut(s)	838, 892, 980, 1720, 1811
BspCNI	CTCAG	1 cut(s)	1540
BspEI	TCCGGA	1 cut(s)	109
BspFNI	CGCG	1 cut(s)	713
BspLI	GGNNCC	1 cut(s)	108
BspOI	GCTAGC	1 cut(s)	131
BspPI	GGATC	6 cut(s)	780, 817, 1032, 1137, 1140, 1213
BspTNI	GGTCTC	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	677
BsrI	ACTGG	2 cut(s)	981, 1046
BssECI	CCNNGG	4 cut(s)	525, 1392, 1563, 1777
BssNI	GRCGYC	1 cut(s)	634
BssSI	CACGAG	1 cut(s)	499
BssT1I	CCWWGG	2 cut(s)	1563, 1777
Bst2BI	CACGAG	1 cut(s)	499
Bst2UI	CCWGG	2 cut(s)	848, 1686
Bst4CI	ACNGT	6 cut(s)	940, 1020, 1235, 1375, 1672, 1765
Bst6I	CTCTTC	2 cut(s)	282, 1587
BstACI	GRCGYC	1 cut(s)	634
BstC8I	GCNNGC	2 cut(s)	129, 1427
BstDEI	CTNAG	2 cut(s)	487, 1548
BstDSI	CCRYGG	2 cut(s)	525, 1777
BstF5I	GGATG	6 cut(s)	214, 403, 519, 589, 700, 1090
BstFNI	CGCG	1 cut(s)	713
BstMAI	GTCTC	1 cut(s)	146
BstMWI	GCNNNNNNNGC	3 cut(s)	157, 1388, 1717
BstNI	CCWGG	2 cut(s)	848, 1686
BstSCI	CCNGG	2 cut(s)	846, 1684
BstSFI	CTRYAG	2 cut(s)	735, 1257
BstSLI	GKGCMC	1 cut(s)	967
BstUI	CGCG	1 cut(s)	713
BstV1I	GCAGC	2 cut(s)	1151, 1362
BstV2I	GAAGAC	1 cut(s)	53
BstX2I	RGATCY	6 cut(s)	622, 787, 809, 1024, 1145, 1205
BstXI	CCANNNNNNTGG	1 cut(s)	1819
BstYI	RGATCY	6 cut(s)	622, 787, 809, 1024, 1145, 1205
BsuI	GTATCC	1 cut(s)	523
BsuRI	GGCC	5 cut(s)	838, 892, 980, 1720, 1811
BtgI	CCRYGG	2 cut(s)	525, 1777
BtsCI	GGATG	6 cut(s)	214, 403, 519, 589, 700, 1090
BtsIMutI	CAGTG	4 cut(s)	988, 1025, 1677, 1761
Cac8I	GCNNGC	2 cut(s)	129, 1427
Cfr13I	GGNCC	2 cut(s)	107, 1728
Csp6I	GTAC	5 cut(s)	182, 815, 1172, 1189, 1772
CviAII	CATG	8 cut(s)	358, 404, 547, 1186, 1725, 1744, 1778, 1807
CviQI	GTAC	5 cut(s)	182, 815, 1172, 1189, 1772
DdeI	CTNAG	2 cut(s)	487, 1548
DraI	TTTAAA	1 cut(s)	345
EaeI	YGGCCR	4 cut(s)	890, 978, 1718, 1809
Eam1104I	CTCTTC	2 cut(s)	282, 1587
EarI	CTCTTC	2 cut(s)	282, 1587
Eco130I	CCWWGG	2 cut(s)	1563, 1777
Eco31I	GGTCTC	1 cut(s)	146
Eco47I	GGWCC	2 cut(s)	107, 1728
Eco57I	CTGAAG	5 cut(s)	603, 686, 713, 1417, 1601
Eco88I	CYCGRG	1 cut(s)	161
EcoRI	GAATTC	3 cut(s)	1103, 1265, 1793
EcoRII	CCWGG	2 cut(s)	846, 1684
EcoT14I	CCWWGG	2 cut(s)	1563, 1777
EcoT22I	ATGCAT	1 cut(s)	1642
ErhI	CCWWGG	2 cut(s)	1563, 1777
FaeI	CATG	8 cut(s)	361, 407, 550, 1189, 1728, 1747, 1781, 1810
FalI	AAGNNNNNCTT	2 cut(s)	552, 584
FatI	CATG	8 cut(s)	357, 403, 546, 1185, 1724, 1743, 1777, 1806
FauI	CCCGC	1 cut(s)	663
FauNDI	CATATG	1 cut(s)	1611
Fnu4HI	GCNGC	2 cut(s)	1140, 1351
FokI	GGATG	6 cut(s)	221, 410, 506, 596, 707, 1097
Fsp4HI	GCNGC	2 cut(s)	1140, 1351
FspBI	CTAG	7 cut(s)	128, 1143, 1286, 1488, 1646, 1712, 1858
GluI	GCNGC	2 cut(s)	1140, 1351
GsuI	CTGGAG	1 cut(s)	1841
HaeIII	GGCC	5 cut(s)	838, 892, 980, 1720, 1811
HapII	CCGG	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	634
Hin1II	CATG	8 cut(s)	361, 407, 550, 1189, 1728, 1747, 1781, 1810
HincII	GTYRAC	2 cut(s)	1047, 1480
HindII	GTYRAC	2 cut(s)	1047, 1480
HindIII	AAGCTT	1 cut(s)	1070
HinfI	GANTC	4 cut(s)	17, 235, 724, 1451
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	3 cut(s)	962, 1247, 1378
Hpy166II	GTNNAC	4 cut(s)	1047, 1480, 1761, 1774
Hpy188I	TCNGA	8 cut(s)	322, 352, 444, 622, 809, 1013, 1549, 1581
Hpy188III	TCNNGA	5 cut(s)	110, 638, 828, 1163, 1820
Hpy8I	GTNNAC	4 cut(s)	1047, 1480, 1761, 1774
Hpy99I	CGWCG	2 cut(s)	444, 822
HpyAV	CCTTC	7 cut(s)	287, 547, 627, 947, 977, 1451, 1624
HpyCH4III	ACNGT	6 cut(s)	940, 1020, 1235, 1375, 1672, 1765
HpyCH4IV	ACGT	4 cut(s)	382, 439, 634, 1304
HpyCH4V	TGCA	8 cut(s)	10, 247, 373, 475, 766, 1139, 1350, 1640
HpyF10VI	GCNNNNNNNGC	3 cut(s)	157, 1388, 1717
HpyF3I	CTNAG	2 cut(s)	487, 1548
HpySE526I	ACGT	4 cut(s)	382, 439, 634, 1304
Hsp92I	GRCGYC	1 cut(s)	634
Hsp92II	CATG	8 cut(s)	361, 407, 550, 1189, 1728, 1747, 1781, 1810
Kpn2I	TCCGGA	1 cut(s)	109
LmnI	GCTCC	1 cut(s)	99
Lsp1109I	GCAGC	2 cut(s)	1151, 1362
LweI	GCATC	4 cut(s)	528, 1123, 1561, 1665
MaeI	CTAG	7 cut(s)	128, 1143, 1286, 1488, 1646, 1712, 1858
MaeII	ACGT	4 cut(s)	382, 439, 634, 1304
MaeIII	GTNAC	3 cut(s)	458, 537, 673
MfeI	CAATTG	1 cut(s)	780
MflI	RGATCY	6 cut(s)	622, 787, 809, 1024, 1145, 1205
MhlI	GDGCHC	1 cut(s)	967
MlsI	TGGCCA	3 cut(s)	892, 1720, 1811
MluNI	TGGCCA	3 cut(s)	892, 1720, 1811
MmeI	TCCRAC	4 cut(s)	264, 330, 422, 787
Mox20I	TGGCCA	3 cut(s)	892, 1720, 1811
Mph1103I	ATGCAT	1 cut(s)	1642
MroI	TCCGGA	1 cut(s)	109
MroXI	GAANNNNTTC	2 cut(s)	879, 1103
MscI	TGGCCA	3 cut(s)	892, 1720, 1811
MseI	TTAA	8 cut(s)	155, 344, 896, 1119, 1179, 1362, 1400, 1572
MslI	CAYNNNNRTG	2 cut(s)	524, 1362
Msp20I	TGGCCA	3 cut(s)	892, 1720, 1811
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	2 cut(s)	848, 1686
MunI	CAATTG	1 cut(s)	780
Mva1269I	GAATGC	1 cut(s)	823
MvaI	CCWGG	2 cut(s)	848, 1686
MvnI	CGCG	1 cut(s)	713
MwoI	GCNNNNNNNGC	3 cut(s)	157, 1388, 1717
NcoI	CCATGG	1 cut(s)	1777
NdeI	CATATG	1 cut(s)	1611
NheI	GCTAGC	1 cut(s)	127
NlaIII	CATG	8 cut(s)	361, 407, 550, 1189, 1728, 1747, 1781, 1810
NlaIV	GGNNCC	1 cut(s)	108
NmeAIII	GCCGAG	1 cut(s)	1417
NmuCI	GTSAC	1 cut(s)	537
NsiI	ATGCAT	1 cut(s)	1642
PctI	GAATGC	1 cut(s)	823
PdmI	GAANNNNTTC	2 cut(s)	879, 1103
PfeI	GAWTC	4 cut(s)	17, 235, 724, 1451
PfoI	TCCNGGA	1 cut(s)	846
PkrI	GCNGC	2 cut(s)	1141, 1352
PshBI	ATTAAT	1 cut(s)	1362
PsiI	TTATAA	2 cut(s)	273, 1559
Psp6I	CCWGG	2 cut(s)	846, 1684
PspGI	CCWGG	2 cut(s)	846, 1684
PspN4I	GGNNCC	1 cut(s)	108
PspPI	GGNCC	2 cut(s)	107, 1728
PsuI	RGATCY	6 cut(s)	622, 787, 809, 1024, 1145, 1205
RsaI	GTAC	5 cut(s)	183, 816, 1173, 1190, 1773
RsaNI	GTAC	5 cut(s)	182, 815, 1172, 1189, 1772
RseI	CAYNNNNRTG	2 cut(s)	524, 1362
SaqAI	TTAA	8 cut(s)	155, 344, 896, 1119, 1179, 1362, 1400, 1572
SatI	GCNGC	2 cut(s)	1140, 1351
Sau96I	GGNCC	2 cut(s)	107, 1728
ScrFI	CCNGG	2 cut(s)	848, 1686
SduI	GDGCHC	1 cut(s)	967
SfaNI	GCATC	4 cut(s)	528, 1123, 1561, 1665
SfcI	CTRYAG	2 cut(s)	735, 1257
SinI	GGWCC	2 cut(s)	107, 1728
SmiMI	CAYNNNNRTG	2 cut(s)	524, 1362
SsiI	CCGC	4 cut(s)	670, 870, 1112, 1389
SspMI	CTAG	7 cut(s)	128, 1143, 1286, 1488, 1646, 1712, 1858
StyD4I	CCNGG	2 cut(s)	846, 1684
StyI	CCWWGG	2 cut(s)	1563, 1777
TaaI	ACNGT	6 cut(s)	940, 1020, 1235, 1375, 1672, 1765
TaiI	ACGT	4 cut(s)	385, 442, 637, 1307
TaqI	TCGA	4 cut(s)	233, 298, 453, 827
TatI	WGTACW	3 cut(s)	181, 1188, 1771
TfiI	GAWTC	4 cut(s)	17, 235, 724, 1451
Tru1I	TTAA	8 cut(s)	155, 344, 896, 1119, 1179, 1362, 1400, 1572
Tru9I	TTAA	8 cut(s)	155, 344, 896, 1119, 1179, 1362, 1400, 1572
TscAI	CASTG	4 cut(s)	988, 1025, 1677, 1768
TseFI	GTSAC	1 cut(s)	537
TseI	GCWGC	2 cut(s)	1139, 1350
Tsp45I	GTSAC	1 cut(s)	537
TspDTI	ATGAA	8 cut(s)	392, 711, 787, 1101, 1183, 1380, 1598, 1612
TspGWI	ACGGA	3 cut(s)	112, 481, 1463
TspRI	CASTG	4 cut(s)	988, 1025, 1677, 1768
VpaK11BI	GGWCC	2 cut(s)	107, 1728
VspI	ATTAAT	1 cut(s)	1362
XapI	RAATTY	7 cut(s)	1007, 1103, 1214, 1265, 1418, 1793, 1838
XcmI	CCANNNNNNNNNTGG	1 cut(s)	940
XmnI	GAANNNNTTC	2 cut(s)	879, 1103
XspI	CTAG	7 cut(s)	128, 1143, 1286, 1488, 1646, 1712, 1858
ZraI	GACGTC	1 cut(s)	635
Zsp2I	ATGCAT	1 cut(s)	1642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.