Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0009717

Physical Location & Seq

Genomic Coordinates Forward (+)

56690802 .. 56692634

Gene Structure 1833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G029020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGTTGACATGCTGGCGATATGCTTGTCGAAGTGAAGATGGATGTAAACGTAGTACTTTTGACTGTCATGATCATCGTAGCAACAGATATATCAGATTGCTAAATGATAAATGTCCTACAAATCCATCGGATTCAACGCTCTTTGATTTTGGCATATTTCTCGATGCTCTTCAGTCAAGTATAGTTGGATCAAAAAATTATTCACAGAAGTTGTCGAAATGTTTTTGGTGGGGTCTACGAAATCTGAGTTCTCTCGGTTCAAACCTCCAACCTAGTATCAATACATGGGAGACCCTCTTCGCGACATTTACTTCTATTACTGGCTTGCTACTGTTTTTATACCTAATTGGAAATCTACAGATGTATATGCAGGTGGAATCAGCAAGTAAAGAGCAACTACGATGGAAGACAGAACTTGAAAATATGATGAGAACTGAAAGAAAGATGAGAATTGAACGGAGCAAGGGTCCGGAGGTAGAACAATGGCTAGCCAAAAATGGTCTCCCTATGCGTTTAATGCCCGAGATAATGGAAAAGGTAGTACAAGTGGATTTAGAACAAAACAGGGATGTTGATGTGGAGAATATCCTTTCGATTCTTCCCTTGCAACTTCAAAGGGATATTTTAGTTTATAAGGAGAAGTTGGAAGAGGAAGGTCGAAAGATAGAGTTGTGGTTATCTGAAAATCGCCTCCCAATGCGTTTAAAGTCGGAGATCATGGAAAAGGTGGTGCAACAAAAACGTGAAGAAAATAGGGATGTTCATGTGGATAATTTCCTATCTATTCTACCAGAGGAACGTCGGAACTATATCGAAAGTTACAAACGGAAATTGCAAGAGAAAGACTTAGAAGTTGGCTCGTGGTTATCTAAAAATGGCATCCCCGTGGATACAAAGTCACAGATCATGGAGAAGGTTCAAGTAGAACTTGAAGAAAACAGGGATGTGGAAGTGAAGAATATCCTCTCCATTCTTCCTTCAGATCTCCAAAGACGTCTTGAATGGTATATGCCTTTGAGTAGGCTGAAGCGGGTGACATTGCTTGAAAGAATGGATGAAAGAGTGTTGAACGCGATTTGTGAGAATCTTCAGCCTATAGAGTTTCCAGCCAAACTCGTCATTATGCAAGAGGATCAACCAATTGAAGATCTGTTCTTCATTGTAGTCGGATCTGTACGACGGCATTCGAGAAATAGGCCGATGTTCCAGGAATACGAAACTGAATTATGCGGAGAAGAACTTCTGGTTTGGCCATTAACAACCTCCTTTCCTGCCGTATTACCCAGAGCAACCAAGACCGTTATGGTGGGTGAAGGTTTTAGTGCCTTCTCCTTACGGCCAGTGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

449

Amino Acids

52.84

Weight (kDa)

5.9

Isoelectric Point (pI)

65.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009717)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20710 FvH4_7g20710 FvH4_7g20710 FvH4_7g20710 FvH4_7g20710 FvH4_7g20740 FvH4_7g20740 FvH4_7g20740
rosa_chinensis	RchiOBHm_Chr1g0364861 RchiOBHm_Chr1g0364961
rosa_laevigata	RLG00000027456
rosa_multiflora	Rmu_ssc0000112.1_g000024
rosa_roxburghii	Rroxscaffold_4G00291640 Rroxscaffold_4G00292050
rosa_rugosa	Rorug01G0318600 Rorug01G0318600 Rorug01G0318600
rosa_samantha	Rh1AG327500 Rh1BG288700 Rh1CG305400 Rh1DG320300
rosa_wichuraiana	Rw1G029020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	633
AarI	CACCTGC	1 cut(s)	361
AatII	GACGTC	1 cut(s)	997
Acc36I	ACCTGC	1 cut(s)	361
AccI	GTMKAC	1 cut(s)	235
AccII	CGCG	2 cut(s)	302, 1073
AccIII	TCCGGA	1 cut(s)	469
AciI	CCGC	2 cut(s)	1030, 1230
AclWI	GGATC	3 cut(s)	196, 1140, 1177
AcoI	YGGCCR	2 cut(s)	1250, 1337
AcuI	CTGAAG	4 cut(s)	155, 963, 1046, 1073
AcyI	GRCGYC	1 cut(s)	994
AfaI	GTAC	3 cut(s)	55, 543, 1176
AjnI	CCWGG	1 cut(s)	1206
Alw26I	GTCTC	2 cut(s)	284, 506
AlwI	GGATC	3 cut(s)	196, 1140, 1177
Ama87I	CYCGRG	1 cut(s)	521
Aor13HI	TCCGGA	1 cut(s)	469
AoxI	GGCC	3 cut(s)	1196, 1250, 1337
Asp700I	GAANNNNTTC	1 cut(s)	1239
AspS9I	GGNCC	1 cut(s)	467
AsuHPI	GGTGA	2 cut(s)	1045, 1322
AsuNHI	GCTAGC	1 cut(s)	487
AvaI	CYCGRG	1 cut(s)	521
AvaII	GGWCC	1 cut(s)	467
BalI	TGGCCA	1 cut(s)	1252
BauI	CACGAG	1 cut(s)	859
BbsI	GAAGAC	1 cut(s)	413
BccI	CCATC	3 cut(s)	32, 133, 396
BceAI	ACGGC	2 cut(s)	1196, 1259
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BciT130I	CCWGG	1 cut(s)	1208
BciVI	GTATCC	1 cut(s)	883
BclI	TGATCA	1 cut(s)	70
BcoDI	GTCTC	2 cut(s)	284, 506
BfaI	CTAG	2 cut(s)	273, 488
BfmI	CTRYAG	2 cut(s)	356, 1095
BfuAI	ACCTGC	1 cut(s)	361
BfuI	GTATCC	1 cut(s)	883
BglII	AGATCT	2 cut(s)	982, 1147
BmcAI	AGTACT	1 cut(s)	55
Bme1390I	CCNGG	1 cut(s)	1208
Bme18I	GGWCC	1 cut(s)	467
BmeT110I	CYCGRG	1 cut(s)	521
BmgT120I	GGNCC	1 cut(s)	467
BmiI	GGNNCC	1 cut(s)	468
BmrFI	CCNGG	1 cut(s)	1208
BmsI	GCATC	2 cut(s)	154, 888
BmtI	GCTAGC	1 cut(s)	491
BpiI	GAAGAC	1 cut(s)	413
BsaHI	GRCGYC	1 cut(s)	994
BsaI	GGTCTC	2 cut(s)	284, 506
BsaJI	CCNNGG	1 cut(s)	885
BsaWI	WCCGGW	1 cut(s)	469
BsaXI	ACNNNNNCTCC	2 cut(s)	451, 481
Bse1I	ACTGG	2 cut(s)	325, 1340
Bse3DI	GCAATG	1 cut(s)	1037
BseAI	TCCGGA	1 cut(s)	469
BseBI	CCWGG	1 cut(s)	1208
BseDI	CCNNGG	1 cut(s)	885
BseGI	GGATG	6 cut(s)	47, 574, 763, 879, 949, 1060
BseMI	GCAATG	1 cut(s)	1037
BseMII	CTCAG	1 cut(s)	236
BseNI	ACTGG	2 cut(s)	325, 1340
Bsh1236I	CGCG	2 cut(s)	302, 1073
BshFI	GGCC	3 cut(s)	1198, 1252, 1339
BsiHKCI	CYCGRG	1 cut(s)	521
BsiSI	CCGG	1 cut(s)	470
BsmAI	GTCTC	2 cut(s)	284, 506
BsmI	GAATGC	1 cut(s)	1183
BsnI	GGCC	3 cut(s)	1198, 1252, 1339
Bso31I	GGTCTC	2 cut(s)	284, 506
BsoBI	CYCGRG	1 cut(s)	521
Bsp13I	TCCGGA	1 cut(s)	469
Bsp143I	GATC	8 cut(s)	70, 188, 714, 903, 982, 1132, 1147, 1169
Bsp68I	TCGCGA	1 cut(s)	302
BspACI	CCGC	2 cut(s)	1030, 1230
BspANI	GGCC	3 cut(s)	1198, 1252, 1339
BspCNI	CTCAG	1 cut(s)	237
BspEI	TCCGGA	1 cut(s)	469
BspFNI	CGCG	2 cut(s)	302, 1073
BspHI	TCATGA	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	468
BspMI	ACCTGC	1 cut(s)	361
BspOI	GCTAGC	1 cut(s)	491
BspPI	GGATC	3 cut(s)	196, 1140, 1177
BspQI	GCTCTTC	1 cut(s)	174
BspTNI	GGTCTC	2 cut(s)	284, 506
BsrDI	GCAATG	1 cut(s)	1037
BsrI	ACTGG	2 cut(s)	325, 1340
BssECI	CCNNGG	1 cut(s)	885
BssMI	GATC	8 cut(s)	70, 188, 714, 903, 982, 1132, 1147, 1169
BssNI	GRCGYC	1 cut(s)	994
BssSI	CACGAG	1 cut(s)	859
Bst2BI	CACGAG	1 cut(s)	859
Bst2UI	CCWGG	1 cut(s)	1208
Bst4CI	ACNGT	3 cut(s)	65, 333, 1300
Bst6I	CTCTTC	3 cut(s)	174, 302, 642
BstACI	GRCGYC	1 cut(s)	994
BstC8I	GCNNGC	3 cut(s)	14, 326, 489
BstDEI	CTNAG	2 cut(s)	245, 847
BstDSI	CCRYGG	1 cut(s)	885
BstF5I	GGATG	6 cut(s)	47, 574, 763, 879, 949, 1060
BstFNI	CGCG	2 cut(s)	302, 1073
BstKTI	GATC	8 cut(s)	73, 191, 717, 906, 985, 1135, 1150, 1172
BstMAI	GTCTC	2 cut(s)	284, 506
BstMBI	GATC	8 cut(s)	70, 188, 714, 903, 982, 1132, 1147, 1169
BstMWI	GCNNNNNNNGC	1 cut(s)	517
BstNI	CCWGG	1 cut(s)	1208
BstNSI	RCATGY	1 cut(s)	12
BstSCI	CCNGG	1 cut(s)	1206
BstSFI	CTRYAG	2 cut(s)	356, 1095
BstUI	CGCG	2 cut(s)	302, 1073
BstV2I	GAAGAC	1 cut(s)	413
BstX2I	RGATCY	3 cut(s)	982, 1147, 1169
BstYI	RGATCY	3 cut(s)	982, 1147, 1169
BsuI	GTATCC	1 cut(s)	883
BsuRI	GGCC	3 cut(s)	1198, 1252, 1339
BtgI	CCRYGG	1 cut(s)	885
BtsCI	GGATG	6 cut(s)	47, 574, 763, 879, 949, 1060
BtsIMutI	CAGTG	1 cut(s)	1347
BtuMI	TCGCGA	1 cut(s)	302
BveI	ACCTGC	1 cut(s)	361
Cac8I	GCNNGC	3 cut(s)	14, 326, 489
CciI	TCATGA	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	467
Csp6I	GTAC	3 cut(s)	54, 542, 1175
CviAII	CATG	6 cut(s)	9, 68, 285, 718, 764, 907
CviQI	GTAC	3 cut(s)	54, 542, 1175
DdeI	CTNAG	2 cut(s)	245, 847
DpnI	GATC	8 cut(s)	72, 190, 716, 905, 984, 1134, 1149, 1171
DpnII	GATC	8 cut(s)	70, 188, 714, 903, 982, 1132, 1147, 1169
DraI	TTTAAA	1 cut(s)	705
EaeI	YGGCCR	2 cut(s)	1250, 1337
Eam1104I	CTCTTC	3 cut(s)	174, 302, 642
EarI	CTCTTC	3 cut(s)	174, 302, 642
Eco31I	GGTCTC	2 cut(s)	284, 506
Eco47I	GGWCC	1 cut(s)	467
Eco57I	CTGAAG	4 cut(s)	155, 963, 1046, 1073
Eco88I	CYCGRG	1 cut(s)	521
EcoRII	CCWGG	1 cut(s)	1206
FaeI	CATG	6 cut(s)	12, 71, 288, 721, 767, 910
FalI	AAGNNNNNCTT	2 cut(s)	912, 944
FatI	CATG	6 cut(s)	8, 67, 284, 717, 763, 906
FauI	CCCGC	1 cut(s)	1023
FbaI	TGATCA	1 cut(s)	70
FblI	GTMKAC	1 cut(s)	235
FokI	GGATG	6 cut(s)	54, 581, 770, 866, 956, 1067
FspBI	CTAG	2 cut(s)	273, 488
HaeIII	GGCC	3 cut(s)	1198, 1252, 1339
HapII	CCGG	1 cut(s)	470
Hin1I	GRCGYC	1 cut(s)	994
Hin1II	CATG	6 cut(s)	12, 71, 288, 721, 767, 910
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	4 cut(s)	131, 377, 595, 1084
HpaII	CCGG	1 cut(s)	470
HphI	GGTGA	2 cut(s)	1045, 1322
Hpy166II	GTNNAC	3 cut(s)	6, 47, 236
Hpy188I	TCNGA	8 cut(s)	95, 130, 246, 682, 712, 804, 982, 1169
Hpy188III	TCNNGA	6 cut(s)	68, 161, 301, 470, 998, 1188
Hpy8I	GTNNAC	3 cut(s)	6, 47, 236
Hpy99I	CGWCG	2 cut(s)	804, 1182
HpyAV	CCTTC	5 cut(s)	647, 907, 987, 1307, 1336
HpyCH4III	ACNGT	3 cut(s)	65, 333, 1300
HpyCH4IV	ACGT	4 cut(s)	49, 742, 799, 994
HpyCH4V	TGCA	5 cut(s)	370, 607, 733, 835, 1126
HpyF10VI	GCNNNNNNNGC	1 cut(s)	517
HpyF3I	CTNAG	2 cut(s)	245, 847
HpySE526I	ACGT	4 cut(s)	49, 742, 799, 994
Hsp92I	GRCGYC	1 cut(s)	994
Hsp92II	CATG	6 cut(s)	12, 71, 288, 721, 767, 910
Kpn2I	TCCGGA	1 cut(s)	469
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	8 cut(s)	70, 188, 714, 903, 982, 1132, 1147, 1169
LguI	GCTCTTC	1 cut(s)	174
LmnI	GCTCC	1 cut(s)	459
LweI	GCATC	2 cut(s)	154, 888
MaeI	CTAG	2 cut(s)	273, 488
MaeII	ACGT	4 cut(s)	49, 742, 799, 994
MaeIII	GTNAC	3 cut(s)	818, 897, 1033
MalI	GATC	8 cut(s)	72, 190, 716, 905, 984, 1134, 1149, 1171
MboI	GATC	8 cut(s)	70, 188, 714, 903, 982, 1132, 1147, 1169
MfeI	CAATTG	1 cut(s)	1140
MflI	RGATCY	3 cut(s)	982, 1147, 1169
MlsI	TGGCCA	1 cut(s)	1252
MluCI	AATT	7 cut(s)	196, 345, 450, 772, 830, 1140, 1223
MluNI	TGGCCA	1 cut(s)	1252
MmeI	TCCRAC	6 cut(s)	166, 292, 624, 690, 782, 1147
MnlI	CCTC	9 cut(s)	275, 305, 466, 643, 701, 787, 974, 1123, 1273
Mox20I	TGGCCA	1 cut(s)	1252
MroI	TCCGGA	1 cut(s)	469
MroXI	GAANNNNTTC	1 cut(s)	1239
MscI	TGGCCA	1 cut(s)	1252
MseI	TTAA	3 cut(s)	515, 704, 1256
MslI	CAYNNNNRTG	1 cut(s)	884
Msp20I	TGGCCA	1 cut(s)	1252
MspI	CCGG	1 cut(s)	470
MspR9I	CCNGG	1 cut(s)	1208
MunI	CAATTG	1 cut(s)	1140
Mva1269I	GAATGC	1 cut(s)	1183
MvaI	CCWGG	1 cut(s)	1208
MvnI	CGCG	2 cut(s)	302, 1073
MwoI	GCNNNNNNNGC	1 cut(s)	517
NdeII	GATC	8 cut(s)	70, 188, 714, 903, 982, 1132, 1147, 1169
NheI	GCTAGC	1 cut(s)	487
NlaIII	CATG	6 cut(s)	12, 71, 288, 721, 767, 910
NlaIV	GGNNCC	1 cut(s)	468
NmuCI	GTSAC	2 cut(s)	897, 1033
NruI	TCGCGA	1 cut(s)	302
NspI	RCATGY	1 cut(s)	12
PagI	TCATGA	1 cut(s)	67
PaqCI	CACCTGC	1 cut(s)	361
PciSI	GCTCTTC	1 cut(s)	174
PctI	GAATGC	1 cut(s)	1183
PdmI	GAANNNNTTC	1 cut(s)	1239
PfeI	GAWTC	4 cut(s)	131, 377, 595, 1084
PfoI	TCCNGGA	1 cut(s)	1206
PsiI	TTATAA	1 cut(s)	633
Psp6I	CCWGG	1 cut(s)	1206
PspGI	CCWGG	1 cut(s)	1206
PspN4I	GGNNCC	1 cut(s)	468
PspPI	GGNCC	1 cut(s)	467
PsuI	RGATCY	3 cut(s)	982, 1147, 1169
RruI	TCGCGA	1 cut(s)	302
RsaI	GTAC	3 cut(s)	55, 543, 1176
RsaNI	GTAC	3 cut(s)	54, 542, 1175
RseI	CAYNNNNRTG	1 cut(s)	884
SapI	GCTCTTC	1 cut(s)	174
SaqAI	TTAA	3 cut(s)	515, 704, 1256
Sau3AI	GATC	8 cut(s)	70, 188, 714, 903, 982, 1132, 1147, 1169
Sau96I	GGNCC	1 cut(s)	467
ScaI	AGTACT	1 cut(s)	55
ScrFI	CCNGG	1 cut(s)	1208
SfaNI	GCATC	2 cut(s)	154, 888
SfcI	CTRYAG	2 cut(s)	356, 1095
SinI	GGWCC	1 cut(s)	467
SmiMI	CAYNNNNRTG	1 cut(s)	884
Sse9I	AATT	7 cut(s)	196, 345, 450, 772, 830, 1140, 1223
SsiI	CCGC	2 cut(s)	1030, 1230
SspMI	CTAG	2 cut(s)	273, 488
StyD4I	CCNGG	1 cut(s)	1206
TaaI	ACNGT	3 cut(s)	65, 333, 1300
TaiI	ACGT	4 cut(s)	52, 745, 802, 997
TaqI	TCGA	7 cut(s)	28, 162, 215, 593, 658, 813, 1187
TasI	AATT	7 cut(s)	196, 345, 450, 772, 830, 1140, 1223
TatI	WGTACW	2 cut(s)	53, 541
TfiI	GAWTC	4 cut(s)	131, 377, 595, 1084
Tru1I	TTAA	3 cut(s)	515, 704, 1256
Tru9I	TTAA	3 cut(s)	515, 704, 1256
TscAI	CASTG	1 cut(s)	1347
TseFI	GTSAC	2 cut(s)	897, 1033
Tsp45I	GTSAC	2 cut(s)	897, 1033
TspDTI	ATGAA	3 cut(s)	752, 1071, 1147
TspGWI	ACGGA	2 cut(s)	472, 841
TspRI	CASTG	1 cut(s)	1347
VpaK11BI	GGWCC	1 cut(s)	467
XceI	RCATGY	1 cut(s)	12
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1300
XmiI	GTMKAC	1 cut(s)	235
XmnI	GAANNNNTTC	1 cut(s)	1239
XspI	CTAG	2 cut(s)	273, 488
ZraI	GACGTC	1 cut(s)	995
ZrmI	AGTACT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.