Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0018220

Physical Location & Seq

Genomic Coordinates Reverse (-)

20891218 .. 20891573

Gene Structure 356 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028271

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGTCTAATCTGCGGCGCGCTGGATCCCATCTGAAGCTCGAAGTCGTCCCTCCACCCTCAATCTCTGATCGGCGGTGCACTGGATCCCATCCGAAGCTCGAAGAGGCTCGAAGTGCTGGTCTTAACTTTGGAACTCCTGGGGTTTTAGGCAGAAGAGGAAAGACGCAATCGGAGCAGGACTCAGCGCAAAGCACTCTGGCGAGAAATCGAGCTTCGATTGGAGGTTGTGCGCTGAGCAAAGCTCCGTTGTACAATGGCGGCAGAGCAGGGAGTCCTTCTAGAAAATCCCGGGAGATTCCGGTAGGGAATTCGGAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

107

Amino Acids

11.18

Weight (kDa)

10.84

Isoelectric Point (pI)

72.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018220)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007560 RLG00000028271 RLG00000030525
rosa_multiflora	Rmu_sc0000161.1_g000023 Rmu_sc0001190.1_g000013 Rmu_sc0003961.1_g000003 Rmu_sc0005514.1_g000024 Rmu_sc0007061.1_g000012
rosa_samantha	Rh2CG458700 Rh5CG209200
rosa_wichuraiana	Rw4G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	18
AciI	CCGC	3 cut(s)	13, 73, 258
AclWI	GGATC	4 cut(s)	18, 31, 78, 91
AcsI	RAATTY	1 cut(s)	307
AcuI	CTGAAG	1 cut(s)	53
AfaI	GTAC	1 cut(s)	251
AjnI	CCWGG	1 cut(s)	136
AluBI	AGCT	4 cut(s)	37, 97, 212, 242
AluI	AGCT	4 cut(s)	37, 97, 212, 242
Alw21I	GWGCWC	1 cut(s)	80
Alw44I	GTGCAC	1 cut(s)	76
AlwI	GGATC	4 cut(s)	18, 31, 78, 91
Ama87I	CYCGRG	1 cut(s)	288
ApaLI	GTGCAC	1 cut(s)	76
ApoI	RAATTY	1 cut(s)	307
ArsI	GACNNNNNNTTYG	2 cut(s)	103, 135
AspLEI	GCGC	4 cut(s)	18, 20, 187, 232
AsuC2I	CCSGG	2 cut(s)	289, 290
AvaI	CYCGRG	1 cut(s)	288
BaeGI	GKGCMC	1 cut(s)	80
BamHI	GGATCC	2 cut(s)	23, 83
Bbv12I	GWGCWC	1 cut(s)	80
BccI	CCATC	2 cut(s)	36, 96
BciT130I	CCWGG	1 cut(s)	138
BcnI	CCSGG	2 cut(s)	289, 290
BfaI	CTAG	1 cut(s)	279
BisI	GCNGC	2 cut(s)	14, 259
BlpI	GCTNAGC	1 cut(s)	233
BlsI	GCNGC	2 cut(s)	15, 260
Bme1390I	CCNGG	3 cut(s)	138, 289, 290
BmeT110I	CYCGRG	1 cut(s)	288
BmiI	GGNNCC	2 cut(s)	25, 85
BmrFI	CCNGG	3 cut(s)	138, 289, 290
BplI	GAGNNNNNCTC	4 cut(s)	164, 196, 226, 258
Bpu1102I	GCTNAGC	1 cut(s)	233
BpuMI	CCSGG	2 cut(s)	289, 290
BsaJI	CCNNGG	2 cut(s)	137, 288
BsaWI	WCCGGW	1 cut(s)	298
Bse1I	ACTGG	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	2 cut(s)	137, 288
BseGI	GGATG	1 cut(s)	88
BseMII	CTCAG	2 cut(s)	195, 224
BseNI	ACTGG	1 cut(s)	85
BsePI	GCGCGC	1 cut(s)	16
BseSI	GKGCMC	1 cut(s)	80
Bsh1236I	CGCG	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	80
BsiHKCI	CYCGRG	1 cut(s)	288
BsiSI	CCGG	2 cut(s)	289, 299
BslFI	GGGAC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	32
BsoBI	CYCGRG	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp1407I	TGTACA	1 cut(s)	249
Bsp143I	GATC	3 cut(s)	23, 67, 83
Bsp1720I	GCTNAGC	1 cut(s)	233
BspACI	CCGC	3 cut(s)	13, 73, 258
BspCNI	CTCAG	2 cut(s)	194, 225
BspFNI	CGCG	1 cut(s)	18
BspLI	GGNNCC	2 cut(s)	25, 85
BspPI	GGATC	4 cut(s)	18, 31, 78, 91
BsrGI	TGTACA	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	85
BssECI	CCNNGG	2 cut(s)	137, 288
BssHII	GCGCGC	1 cut(s)	16
BssMI	GATC	3 cut(s)	23, 67, 83
Bst2UI	CCWGG	1 cut(s)	138
Bst6I	CTCTTC	2 cut(s)	96, 148
BstAUI	TGTACA	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	18
BstDEI	CTNAG	2 cut(s)	181, 233
BstF5I	GGATG	1 cut(s)	88
BstFNI	CGCG	1 cut(s)	18
BstHHI	GCGC	4 cut(s)	18, 20, 187, 232
BstKTI	GATC	3 cut(s)	26, 70, 86
BstMBI	GATC	3 cut(s)	23, 67, 83
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 172
BstNI	CCWGG	1 cut(s)	138
BstSCI	CCNGG	3 cut(s)	136, 287, 288
BstSLI	GKGCMC	1 cut(s)	80
BstUI	CGCG	1 cut(s)	18
BstX2I	RGATCY	2 cut(s)	23, 83
BstYI	RGATCY	2 cut(s)	23, 83
BtsCI	GGATG	1 cut(s)	88
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	1 cut(s)	18
CfoI	GCGC	4 cut(s)	18, 20, 187, 232
Cfr9I	CCCGGG	1 cut(s)	288
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	250
CviJI	RGCY	5 cut(s)	37, 97, 107, 212, 242
CviKI_1	RGCY	5 cut(s)	37, 97, 107, 212, 242
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	2 cut(s)	181, 233
DpnI	GATC	3 cut(s)	25, 69, 85
DpnII	GATC	3 cut(s)	23, 67, 83
Eam1104I	CTCTTC	2 cut(s)	96, 148
EarI	CTCTTC	2 cut(s)	96, 148
Eco57I	CTGAAG	1 cut(s)	53
Eco88I	CYCGRG	1 cut(s)	288
EcoRI	GAATTC	1 cut(s)	307
EcoRII	CCWGG	1 cut(s)	136
FaqI	GGGAC	1 cut(s)	32
Fnu4HI	GCNGC	2 cut(s)	14, 259
FokI	GGATG	1 cut(s)	75
Fsp4HI	GCNGC	2 cut(s)	14, 259
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	4 cut(s)	17, 19, 186, 231
GluI	GCNGC	2 cut(s)	14, 259
HapII	CCGG	2 cut(s)	289, 299
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	4 cut(s)	18, 20, 187, 232
Hin6I	GCGC	4 cut(s)	16, 18, 185, 230
HinP1I	GCGC	4 cut(s)	16, 18, 185, 230
HinfI	GANTC	3 cut(s)	179, 271, 295
HpaII	CCGG	2 cut(s)	289, 299
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188I	TCNGA	5 cut(s)	33, 67, 93, 172, 313
Hpy188III	TCNNGA	1 cut(s)	279
Hpy8I	GTNNAC	1 cut(s)	78
HpyAV	CCTTC	1 cut(s)	285
HpyCH4V	TGCA	1 cut(s)	78
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 172
HpyF3I	CTNAG	2 cut(s)	181, 233
HspAI	GCGC	4 cut(s)	16, 18, 185, 230
Kzo9I	GATC	3 cut(s)	23, 67, 83
LmnI	GCTCC	3 cut(s)	172, 247, 313
MaeI	CTAG	1 cut(s)	279
MalI	GATC	3 cut(s)	25, 69, 85
MboI	GATC	3 cut(s)	23, 67, 83
MboII	GAAGA	2 cut(s)	113, 165
MflI	RGATCY	2 cut(s)	23, 83
MhlI	GDGCHC	1 cut(s)	80
MluCI	AATT	1 cut(s)	307
MlyI	GAGTC	2 cut(s)	173, 280
MnlI	CCTC	5 cut(s)	60, 67, 97, 149, 215
MseI	TTAA	1 cut(s)	123
MspI	CCGG	2 cut(s)	289, 299
MspR9I	CCNGG	3 cut(s)	138, 289, 290
MvaI	CCWGG	1 cut(s)	138
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	2 cut(s)	113, 172
NciI	CCSGG	2 cut(s)	289, 290
NdeII	GATC	3 cut(s)	23, 67, 83
NlaIV	GGNNCC	2 cut(s)	25, 85
PauI	GCGCGC	1 cut(s)	16
PfeI	GAWTC	1 cut(s)	295
PkrI	GCNGC	2 cut(s)	15, 260
PleI	GAGTC	2 cut(s)	173, 279
PpsI	GAGTC	2 cut(s)	173, 279
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
PspN4I	GGNNCC	2 cut(s)	25, 85
PsuI	RGATCY	2 cut(s)	23, 83
PteI	GCGCGC	1 cut(s)	16
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	2 cut(s)	14, 259
Sau3AI	GATC	3 cut(s)	23, 67, 83
SchI	GAGTC	2 cut(s)	173, 280
ScrFI	CCNGG	3 cut(s)	138, 289, 290
SduI	GDGCHC	1 cut(s)	80
SetI	ASST	5 cut(s)	39, 99, 214, 226, 244
SmaI	CCCGGG	1 cut(s)	290
Sse9I	AATT	1 cut(s)	307
SsiI	CCGC	3 cut(s)	13, 73, 258
SspMI	CTAG	1 cut(s)	279
StyD4I	CCNGG	3 cut(s)	136, 287, 288
TaqI	TCGA	5 cut(s)	39, 99, 109, 208, 215
TasI	AATT	1 cut(s)	307
TatI	WGTACW	1 cut(s)	249
TauI	GCSGC	2 cut(s)	16, 261
TfiI	GAWTC	1 cut(s)	295
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	1 cut(s)	85
TspGWI	ACGGA	1 cut(s)	234
TspMI	CCCGGG	1 cut(s)	288
TspRI	CASTG	1 cut(s)	85
VneI	GTGCAC	1 cut(s)	76
XapI	RAATTY	1 cut(s)	307
XbaI	TCTAGA	1 cut(s)	278
XmaI	CCCGGG	1 cut(s)	288
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.