Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001190.1

Orthogroup ID

OG0018220

Physical Location & Seq

Genomic Coordinates Forward (+)

58012 .. 58704

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001190.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atgcgaccgaaaagtggccaaaaactcgaacttcacacgaacatcgtctccgattacttcctctgccacctccaagtccaattacttcgtcttctttatttttctccgtcgtccctctgccctcaatctccaatctcggatcgacggtgcactggatctcatccgaagctcgaagtcgtccttctgccctcaatctccgatcggcggttcgctagatcgcattcgaagctcgaagagattagatccagtaggtttttgtcatcggagagaagactcgaagctttggataaagccggaagtgctggtctccgcttcagaactcctggggttttaggcagacgaggaaagaagcattctgagcgggactcgacgcaaagcactccggcaagaaatcgagcttcgattggaggttatgcactgagcaaaactccaatgtacaatagcggcattgcagggagtccttcaagaaaatcccgggagattctggtggggaattcagatgttgatttggtgattggatatagagttaaggttttggtggatttgatttgtttgatttgtgttttgagtttcaggtattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

193

Amino Acids

21.59

Weight (kDa)

10.21

Isoelectric Point (pI)

60.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018220)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007560 RLG00000028271 RLG00000030525
rosa_multiflora	Rmu_sc0000161.1_g000023 Rmu_sc0001190.1_g000013 Rmu_sc0003961.1_g000003 Rmu_sc0005514.1_g000024 Rmu_sc0007061.1_g000012
rosa_samantha	Rh2CG458700 Rh5CG209200
rosa_wichuraiana	Rw4G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	361
AciI	CCGC	4 cut(s)	205, 310, 361, 444
AclWI	GGATC	3 cut(s)	147, 163, 237
AcoI	YGGCCR	1 cut(s)	16
AcsI	RAATTY	1 cut(s)	493
AcuI	CTGAAG	1 cut(s)	298
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	2 cut(s)	14, 204
AgsI	TTSAA	1 cut(s)	465
AjnI	CCWGG	1 cut(s)	322
AloI	GAACNNNNNNTCC	2 cut(s)	32, 64
AluBI	AGCT	4 cut(s)	169, 229, 281, 398
AluI	AGCT	4 cut(s)	169, 229, 281, 398
Alw21I	GWGCWC	1 cut(s)	152
Alw26I	GTCTC	2 cut(s)	52, 311
Alw44I	GTGCAC	1 cut(s)	148
AlwI	GGATC	3 cut(s)	147, 163, 237
Ama87I	CYCGRG	1 cut(s)	474
AoxI	GGCC	1 cut(s)	16
ApaLI	GTGCAC	1 cut(s)	148
ApoI	RAATTY	1 cut(s)	493
AsuC2I	CCSGG	2 cut(s)	475, 476
AsuHPI	GGTGA	1 cut(s)	523
AsuII	TTCGAA	1 cut(s)	224
AvaI	CYCGRG	1 cut(s)	474
BaeGI	GKGCMC	1 cut(s)	152
BalI	TGGCCA	1 cut(s)	18
BbsI	GAAGAC	2 cut(s)	83, 277
Bbv12I	GWGCWC	1 cut(s)	152
BciT130I	CCWGG	1 cut(s)	324
BcnI	CCSGG	2 cut(s)	475, 476
BcoDI	GTCTC	2 cut(s)	52, 311
BfaI	CTAG	1 cut(s)	213
BisI	GCNGC	1 cut(s)	445
BlsI	GCNGC	1 cut(s)	446
Bme1390I	CCNGG	3 cut(s)	324, 475, 476
BmeT110I	CYCGRG	1 cut(s)	474
BmrFI	CCNGG	3 cut(s)	324, 475, 476
BpiI	GAAGAC	2 cut(s)	83, 277
BplI	GAGNNNNNCTC	4 cut(s)	350, 382, 412, 444
Bpu14I	TTCGAA	1 cut(s)	224
BpuMI	CCSGG	2 cut(s)	475, 476
BsaI	GGTCTC	1 cut(s)	311
BsaJI	CCNNGG	2 cut(s)	323, 474
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 204
Bse1I	ACTGG	2 cut(s)	157, 246
Bse3DI	GCAATG	1 cut(s)	447
BseBI	CCWGG	1 cut(s)	324
BseDI	CCNNGG	2 cut(s)	323, 474
BseGI	GGATG	1 cut(s)	160
BseLI	CCNNNNNNNGG	2 cut(s)	14, 204
BseMI	GCAATG	1 cut(s)	447
BseMII	CTCAG	2 cut(s)	348, 410
BseNI	ACTGG	2 cut(s)	157, 246
BseSI	GKGCMC	1 cut(s)	152
Bsh1285I	CGRYCG	2 cut(s)	8, 202
BshFI	GGCC	1 cut(s)	18
BsiEI	CGRYCG	2 cut(s)	8, 202
BsiHKAI	GWGCWC	1 cut(s)	152
BsiHKCI	CYCGRG	1 cut(s)	474
BsiSI	CCGG	3 cut(s)	294, 383, 475
BslFI	GGGAC	2 cut(s)	97, 377
BslI	CCNNNNNNNGG	2 cut(s)	14, 204
BsmAI	GTCTC	2 cut(s)	52, 311
BsmBI	CGTCTC	1 cut(s)	52
BsmFI	GGGAC	2 cut(s)	97, 377
BsmI	GAATGC	2 cut(s)	220, 352
BsnI	GGCC	1 cut(s)	18
Bso31I	GGTCTC	1 cut(s)	311
BsoBI	CYCGRG	1 cut(s)	474
Bsp119I	TTCGAA	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp1407I	TGTACA	1 cut(s)	435
Bsp143I	GATC	5 cut(s)	139, 155, 199, 215, 242
BspACI	CCGC	4 cut(s)	205, 310, 361, 444
BspANI	GGCC	1 cut(s)	18
BspCNI	CTCAG	2 cut(s)	349, 411
BspPI	GGATC	3 cut(s)	147, 163, 237
BspT104I	TTCGAA	1 cut(s)	224
BspTNI	GGTCTC	1 cut(s)	311
BsrBI	CCGCTC	1 cut(s)	361
BsrDI	GCAATG	1 cut(s)	447
BsrGI	TGTACA	1 cut(s)	435
BsrI	ACTGG	2 cut(s)	157, 246
BssECI	CCNNGG	2 cut(s)	323, 474
BssMI	GATC	5 cut(s)	139, 155, 199, 215, 242
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	1 cut(s)	147
Bst6I	CTCTTC	1 cut(s)	228
BstAUI	TGTACA	1 cut(s)	435
BstBI	TTCGAA	1 cut(s)	224
BstDEI	CTNAG	2 cut(s)	357, 419
BstF5I	GGATG	1 cut(s)	160
BstKTI	GATC	5 cut(s)	142, 158, 202, 218, 245
BstMAI	GTCTC	2 cut(s)	52, 311
BstMBI	GATC	5 cut(s)	139, 155, 199, 215, 242
BstMCI	CGRYCG	2 cut(s)	8, 202
BstMWI	GCNNNNNNNGC	3 cut(s)	226, 299, 358
BstNI	CCWGG	1 cut(s)	324
BstSCI	CCNGG	3 cut(s)	322, 473, 474
BstSLI	GKGCMC	1 cut(s)	152
BstV2I	GAAGAC	2 cut(s)	83, 277
BstX2I	RGATCY	2 cut(s)	155, 242
BstYI	RGATCY	2 cut(s)	155, 242
BsuRI	GGCC	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	160
BtsIMutI	CAGTG	2 cut(s)	150, 416
Cfr9I	CCCGGG	1 cut(s)	474
CseI	GACGC	1 cut(s)	379
Csp6I	GTAC	1 cut(s)	436
CviJI	RGCY	6 cut(s)	18, 169, 229, 281, 293, 398
CviKI_1	RGCY	6 cut(s)	18, 169, 229, 281, 293, 398
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	2 cut(s)	357, 419
DpnI	GATC	5 cut(s)	141, 157, 201, 217, 244
DpnII	GATC	5 cut(s)	139, 155, 199, 215, 242
EaeI	YGGCCR	1 cut(s)	16
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	311
Eco57I	CTGAAG	1 cut(s)	298
Eco88I	CYCGRG	1 cut(s)	474
EcoRI	GAATTC	1 cut(s)	493
EcoRII	CCWGG	1 cut(s)	322
Esp3I	CGTCTC	1 cut(s)	52
FaiI	YATR	2 cut(s)	414, 522
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FaqI	GGGAC	2 cut(s)	97, 377
FauI	CCCGC	1 cut(s)	354
Fnu4HI	GCNGC	1 cut(s)	445
FokI	GGATG	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	445
FspBI	CTAG	1 cut(s)	213
GluI	GCNGC	1 cut(s)	445
HaeIII	GGCC	1 cut(s)	18
HapII	CCGG	3 cut(s)	294, 383, 475
HgaI	GACGC	1 cut(s)	379
HindIII	AAGCTT	1 cut(s)	279
HinfI	GANTC	4 cut(s)	273, 365, 457, 481
HpaII	CCGG	3 cut(s)	294, 383, 475
HphI	GGTGA	1 cut(s)	523
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188I	TCNGA	8 cut(s)	52, 139, 165, 199, 265, 317, 358, 499
Hpy188III	TCNNGA	1 cut(s)	465
Hpy8I	GTNNAC	1 cut(s)	150
Hpy99I	CGWCG	3 cut(s)	112, 147, 373
HpyAV	CCTTC	2 cut(s)	191, 471
HpyCH4III	ACNGT	1 cut(s)	147
HpyCH4V	TGCA	3 cut(s)	150, 416, 452
HpyF10VI	GCNNNNNNNGC	3 cut(s)	226, 299, 358
HpyF3I	CTNAG	2 cut(s)	357, 419
Kzo9I	GATC	5 cut(s)	139, 155, 199, 215, 242
MaeI	CTAG	1 cut(s)	213
MalI	GATC	5 cut(s)	141, 157, 201, 217, 244
MbiI	CCGCTC	1 cut(s)	361
MboI	GATC	5 cut(s)	139, 155, 199, 215, 242
MboII	GAAGA	3 cut(s)	83, 245, 282
MflI	RGATCY	2 cut(s)	155, 242
MhlI	GDGCHC	1 cut(s)	152
MlsI	TGGCCA	1 cut(s)	18
MluCI	AATT	2 cut(s)	80, 493
MluNI	TGGCCA	1 cut(s)	18
MlyI	GAGTC	3 cut(s)	267, 359, 466
MnlI	CCTC	7 cut(s)	71, 80, 125, 132, 199, 335, 401
Mox20I	TGGCCA	1 cut(s)	18
MscI	TGGCCA	1 cut(s)	18
MseI	TTAA	1 cut(s)	528
Msp20I	TGGCCA	1 cut(s)	18
MspI	CCGG	3 cut(s)	294, 383, 475
MspR9I	CCNGG	3 cut(s)	324, 475, 476
Mva1269I	GAATGC	2 cut(s)	220, 352
MvaI	CCWGG	1 cut(s)	324
MwoI	GCNNNNNNNGC	3 cut(s)	226, 299, 358
NciI	CCSGG	2 cut(s)	475, 476
NdeII	GATC	5 cut(s)	139, 155, 199, 215, 242
NspV	TTCGAA	1 cut(s)	224
PctI	GAATGC	2 cut(s)	220, 352
PfeI	GAWTC	1 cut(s)	481
PkrI	GCNGC	1 cut(s)	446
Ple19I	CGATCG	1 cut(s)	202
PleI	GAGTC	3 cut(s)	267, 359, 465
PpsI	GAGTC	3 cut(s)	267, 359, 465
Psp6I	CCWGG	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	322
PsuI	RGATCY	2 cut(s)	155, 242
PvuI	CGATCG	1 cut(s)	202
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	1 cut(s)	445
Sau3AI	GATC	5 cut(s)	139, 155, 199, 215, 242
SchI	GAGTC	3 cut(s)	267, 359, 466
ScrFI	CCNGG	3 cut(s)	324, 475, 476
SduI	GDGCHC	1 cut(s)	152
SetI	ASST	9 cut(s)	72, 171, 231, 254, 283, 400, 412, 534, 578
SfuI	TTCGAA	1 cut(s)	224
SmaI	CCCGGG	1 cut(s)	476
Sse9I	AATT	2 cut(s)	80, 493
SsiI	CCGC	4 cut(s)	205, 310, 361, 444
SspMI	CTAG	1 cut(s)	213
StyD4I	CCNGG	3 cut(s)	322, 473, 474
TaaI	ACNGT	1 cut(s)	147
TaqI	TCGA	9 cut(s)	27, 142, 171, 224, 231, 276, 368, 394, 401
TaqII	GACCGA	1 cut(s)	22
TasI	AATT	2 cut(s)	80, 493
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	1 cut(s)	447
TfiI	GAWTC	1 cut(s)	481
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TscAI	CASTG	2 cut(s)	157, 423
TspGWI	ACGGA	1 cut(s)	96
TspMI	CCCGGG	1 cut(s)	474
TspRI	CASTG	2 cut(s)	157, 423
VneI	GTGCAC	1 cut(s)	148
XapI	RAATTY	1 cut(s)	493
XmaI	CCCGGG	1 cut(s)	474
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.