Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0018220

Physical Location & Seq

Genomic Coordinates Forward (+)

62184078 .. 62187879

Gene Structure 3802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG458700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCTCCGACAAGGAGGAAGACGACCAAGCAGAGGAGAAAGGCGAGGGCTGGTTTTACCATCAAGATCAACAAGGAGGAACAAAAACAAGTTGAGGCCTCGGAGCGTGAGATTGCGGATCTGAATCTGGGCGACAAGTGTGTAACCTCAGGTAGCAAGGGGCAAGAATCAGAGGGTTCTGGAGACATTAAAGGTGATGACTATTTGGGCGAGGATGTGTCAGGTAGCAAGGGGAAAGAATCAAAGGATCATCTAAGAACTGCCCGTGATGACTTTTTGGGCATAAATATTCCAGGCAGAGGAGGAAAGACGCATTCGGAGCAGGACTCGACGCAAAGCACTCTGGCGAGAAATCGAGCTTTGATTGGAGGTTGTGCGCTCAGCAAAGCTCCGGTGTACAATGGCGGCAGAGCAGGGGGTCCTTCTAGAAAATCCCGAGAGATTCCGGTGGGGAATTCAGAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

155

Amino Acids

16.59

Weight (kDa)

9.54

Isoelectric Point (pI)

50.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018220)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007560 RLG00000028271 RLG00000030525
rosa_multiflora	Rmu_sc0000161.1_g000023 Rmu_sc0001190.1_g000013 Rmu_sc0003961.1_g000003 Rmu_sc0005514.1_g000024 Rmu_sc0007061.1_g000012
rosa_samantha	Rh2CG458700 Rh5CG209200
rosa_wichuraiana	Rw4G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	116, 405
AclWI	GGATC	2 cut(s)	126, 255
AcsI	RAATTY	1 cut(s)	454
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	2 cut(s)	33, 299
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	2 cut(s)	359, 389
AluI	AGCT	2 cut(s)	359, 389
Alw26I	GTCTC	1 cut(s)	177
AlwI	GGATC	2 cut(s)	126, 255
Ama87I	CYCGRG	1 cut(s)	435
AoxI	GGCC	1 cut(s)	96
ApoI	RAATTY	1 cut(s)	454
AspLEI	GCGC	1 cut(s)	379
AspS9I	GGNCC	1 cut(s)	419
AsuHPI	GGTGA	1 cut(s)	206
AvaI	CYCGRG	1 cut(s)	435
AvaII	GGWCC	1 cut(s)	419
AxyI	CCTNAGG	1 cut(s)	148
BbsI	GAAGAC	1 cut(s)	26
BccI	CCATC	1 cut(s)	68
BciT130I	CCWGG	1 cut(s)	294
BcoDI	GTCTC	1 cut(s)	177
BfaI	CTAG	1 cut(s)	426
BisI	GCNGC	1 cut(s)	406
BlpI	GCTNAGC	1 cut(s)	380
BlsI	GCNGC	1 cut(s)	407
Bme1390I	CCNGG	1 cut(s)	294
Bme18I	GGWCC	1 cut(s)	419
BmeT110I	CYCGRG	1 cut(s)	435
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	2 cut(s)	6, 420
BmrFI	CCNGG	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	26
BplI	GAGNNNNNCTC	2 cut(s)	311, 343
BpmI	CTGGAG	1 cut(s)	201
Bpu1102I	GCTNAGC	1 cut(s)	380
BsaBI	GATNNNNATC	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	99
BsaWI	WCCGGW	2 cut(s)	391, 445
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 299
Bse21I	CCTNAGG	1 cut(s)	148
Bse8I	GATNNNNATC	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	1 cut(s)	220
BseJI	GATNNNNATC	1 cut(s)	123
BseLI	CCNNNNNNNGG	2 cut(s)	33, 299
BseMII	CTCAG	2 cut(s)	162, 394
BseRI	GAGGAG	2 cut(s)	49, 315
BshFI	GGCC	1 cut(s)	98
BsiHKCI	CYCGRG	1 cut(s)	435
BsiSI	CCGG	2 cut(s)	392, 446
BslI	CCNNNNNNNGG	2 cut(s)	33, 299
BsmAI	GTCTC	1 cut(s)	177
BsmI	GAATGC	1 cut(s)	313
BsnI	GGCC	1 cut(s)	98
BsoBI	CYCGRG	1 cut(s)	435
Bsp1407I	TGTACA	1 cut(s)	396
Bsp143I	GATC	3 cut(s)	66, 118, 247
Bsp1720I	GCTNAGC	1 cut(s)	380
BspACI	CCGC	2 cut(s)	116, 405
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	2 cut(s)	161, 393
BspLI	GGNNCC	2 cut(s)	6, 420
BspPI	GGATC	2 cut(s)	126, 255
BsrGI	TGTACA	1 cut(s)	396
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	3 cut(s)	66, 118, 247
Bst2UI	CCWGG	1 cut(s)	294
BstAUI	TGTACA	1 cut(s)	396
BstDEI	CTNAG	3 cut(s)	148, 254, 380
BstF5I	GGATG	1 cut(s)	220
BstHHI	GCGC	1 cut(s)	379
BstKTI	GATC	3 cut(s)	69, 121, 250
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	3 cut(s)	66, 118, 247
BstMWI	GCNNNNNNNGC	1 cut(s)	319
BstNI	CCWGG	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	292
BstV2I	GAAGAC	1 cut(s)	26
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
Bsu36I	CCTNAGG	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	220
CfoI	GCGC	1 cut(s)	379
Cfr13I	GGNCC	1 cut(s)	419
CseI	GACGC	2 cut(s)	319, 340
Csp6I	GTAC	1 cut(s)	397
CviJI	RGCY	5 cut(s)	5, 50, 98, 359, 389
CviKI_1	RGCY	5 cut(s)	5, 50, 98, 359, 389
CviQI	GTAC	1 cut(s)	397
DdeI	CTNAG	3 cut(s)	148, 254, 380
DpnI	GATC	3 cut(s)	68, 120, 249
DpnII	GATC	3 cut(s)	66, 118, 247
Eco147I	AGGCCT	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	419
Eco81I	CCTNAGG	1 cut(s)	148
Eco88I	CYCGRG	1 cut(s)	435
EcoO109I	RGGNCCY	1 cut(s)	419
EcoRI	GAATTC	1 cut(s)	454
EcoRII	CCWGG	1 cut(s)	292
FaiI	YATR	1 cut(s)	284
Fnu4HI	GCNGC	1 cut(s)	406
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	1 cut(s)	406
FspBI	CTAG	1 cut(s)	426
GlaI	GCGC	1 cut(s)	378
GluI	GCNGC	1 cut(s)	406
GsuI	CTGGAG	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	2 cut(s)	392, 446
HgaI	GACGC	2 cut(s)	319, 340
HhaI	GCGC	1 cut(s)	379
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HinfI	GANTC	5 cut(s)	124, 167, 239, 326, 442
HpaII	CCGG	2 cut(s)	392, 446
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	6 cut(s)	9, 103, 123, 172, 319, 460
Hpy188III	TCNNGA	4 cut(s)	64, 180, 426, 435
Hpy8I	GTNNAC	1 cut(s)	397
Hpy99I	CGWCG	1 cut(s)	334
HpyAV	CCTTC	1 cut(s)	432
HpyF10VI	GCNNNNNNNGC	1 cut(s)	319
HpyF3I	CTNAG	3 cut(s)	148, 254, 380
HspAI	GCGC	1 cut(s)	377
Kzo9I	GATC	3 cut(s)	66, 118, 247
LmnI	GCTCC	4 cut(s)	10, 103, 319, 394
MaeI	CTAG	1 cut(s)	426
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	3 cut(s)	68, 120, 249
MboI	GATC	3 cut(s)	66, 118, 247
MboII	GAAGA	1 cut(s)	31
MflI	RGATCY	1 cut(s)	118
MluCI	AATT	1 cut(s)	454
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	1 cut(s)	32
MseI	TTAA	1 cut(s)	189
MspI	CCGG	2 cut(s)	392, 446
MspR9I	CCNGG	1 cut(s)	294
Mva1269I	GAATGC	1 cut(s)	313
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	1 cut(s)	319
NdeII	GATC	3 cut(s)	66, 118, 247
NlaIV	GGNNCC	2 cut(s)	6, 420
PceI	AGGCCT	1 cut(s)	98
PctI	GAATGC	1 cut(s)	313
PfeI	GAWTC	4 cut(s)	124, 167, 239, 442
PkrI	GCNGC	1 cut(s)	407
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
PpuMI	RGGWCCY	1 cut(s)	419
Psp5II	RGGWCCY	1 cut(s)	419
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	2 cut(s)	6, 420
PspPI	GGNCC	1 cut(s)	419
PspPPI	RGGWCCY	1 cut(s)	419
PsuI	RGATCY	1 cut(s)	118
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	1 cut(s)	406
Sau3AI	GATC	3 cut(s)	66, 118, 247
Sau96I	GGNCC	1 cut(s)	419
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	1 cut(s)	294
SetI	ASST	7 cut(s)	149, 154, 196, 226, 361, 373, 391
SinI	GGWCC	1 cut(s)	419
Sse9I	AATT	1 cut(s)	454
SseBI	AGGCCT	1 cut(s)	98
SsiI	CCGC	2 cut(s)	116, 405
SspI	AATATT	1 cut(s)	289
SspMI	CTAG	1 cut(s)	426
StuI	AGGCCT	1 cut(s)	98
StyD4I	CCNGG	1 cut(s)	292
TaqI	TCGA	2 cut(s)	329, 355
TasI	AATT	1 cut(s)	454
TatI	WGTACW	1 cut(s)	396
TauI	GCSGC	1 cut(s)	408
TfiI	GAWTC	4 cut(s)	124, 167, 239, 442
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
VpaK11BI	GGWCC	1 cut(s)	419
XapI	RAATTY	1 cut(s)	454
XbaI	TCTAGA	1 cut(s)	425
XspI	CTAG	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.