Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007061.1

Orthogroup ID

OG0018220

Physical Location & Seq

Genomic Coordinates Reverse (-)

59530 .. 62400

Gene Structure 2871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007061.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

atgttgatgttgacggaaggtggcaagacacagtcctctacatgtgggaaagagtcctctacatgtgggtgtggttttcggtacaaaagcaaacagagcttaaggtcgtccgaacaattcacagggggacgggatatatggcataattactccgaacagagccgacggtctcgccgctgcgttccggcccgggagaggattaatgatgtggagatggagtgggctttcagggcggcgggtggaggcagtggtgcagcagtgactaacttcggctttccagtggtggtttctggcaccatcgatcctgtgtgggttgtggttgtggcgattcagaacggatcgaggcttggagcggcgaagggattcggcacaaaggcgttttgttgtgaggcggtgacgtggtggcgacagggctcactggaggtgggaatggttgcctgctgcgcttggttctggttgtgggaggtggtgtttgggcctggcttttgggcttgggtctctttggtggtctttggggttggggtttggtgtttctgggtagtgtcgatgccatttttttggtgtcatggtcagtttgctatgtcttggtctggtcatttgtcggtgcttcttggttatcaacgtgatggtgaatcacccttacatgtggccgggggtcttgggttgcggtgtccgaacgggaacatcgtctccaattacgtcatctgccacctccaagtccgattacttcgtcttctttatctttatccgtcgtccctctgccctcaatctccaatctcctatcggcggtgtgctggatcgtatccgaagctcgaagtcgtccctctaccctcaatctctgatcggtggtgcgctggatcgcatccgaagctcgaagaggttagatccaataggttttcattatcggagagaaggctcgaagctttgaataaagccggaagtgctggtctcagcttcggaactcctggggttttaggcagaggaggaaagaagcattcagagcgggactcagcgcaatgcacttcggtgagaaatcgagcttcgattggaggttgtgctctgagcaaagctccggtgtacaatggcggcagagcagggagtccttctagaaaatcccaggagttttcaatggggcattcagagcgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

382

Amino Acids

41.81

Weight (kDa)

9.42

Isoelectric Point (pI)

54.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018220)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007560 RLG00000028271 RLG00000030525
rosa_multiflora	Rmu_sc0000161.1_g000023 Rmu_sc0001190.1_g000013 Rmu_sc0003961.1_g000003 Rmu_sc0005514.1_g000024 Rmu_sc0007061.1_g000012
rosa_samantha	Rh2CG458700 Rh5CG209200
rosa_wichuraiana	Rw4G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	293
AccBSI	CCGCTC	2 cut(s)	353, 1003
AciI	CCGC	9 cut(s)	175, 233, 236, 353, 392, 667, 787, 1003, 1086
AclWI	GGATC	5 cut(s)	296, 346, 805, 865, 879
AcoI	YGGCCR	1 cut(s)	648
AfaI	GTAC	2 cut(s)	83, 1079
AfiI	CCNNNNNNNGG	2 cut(s)	195, 786
AflII	CTTAAG	1 cut(s)	100
AflIII	ACRYGT	3 cut(s)	41, 62, 643
AgsI	TTSAA	2 cut(s)	928, 1128
AjiI	CACGTC	1 cut(s)	399
AjnI	CCWGG	3 cut(s)	478, 964, 1116
AleI	CACNNNNGTG	1 cut(s)	1025
AloI	GAACNNNNNNTCC	2 cut(s)	674, 706
AluBI	AGCT	7 cut(s)	99, 811, 871, 923, 954, 1040, 1070
AluI	AGCT	7 cut(s)	99, 811, 871, 923, 954, 1040, 1070
Alw21I	GWGCWC	1 cut(s)	1060
Alw26I	GTCTC	4 cut(s)	174, 502, 694, 953
AlwI	GGATC	5 cut(s)	296, 346, 805, 865, 879
Ama87I	CYCGRG	1 cut(s)	189
AoxI	GGCC	3 cut(s)	186, 476, 648
ApeKI	GCWGC	3 cut(s)	177, 254, 441
AseI	ATTAAT	1 cut(s)	201
Asp700I	GAANNNNTTC	1 cut(s)	362
AspLEI	GCGC	3 cut(s)	446, 854, 1015
AspS9I	GGNCC	2 cut(s)	187, 476
AsuC2I	CCSGG	3 cut(s)	190, 191, 652
AsuHPI	GGTGA	4 cut(s)	406, 627, 641, 1039
AvaI	CYCGRG	1 cut(s)	189
BanI	GGYRCC	1 cut(s)	293
BanII	GRGCYC	1 cut(s)	416
BbsI	GAAGAC	1 cut(s)	725
Bbv12I	GWGCWC	1 cut(s)	1060
BbvI	GCAGC	3 cut(s)	164, 266, 428
BccI	CCATC	3 cut(s)	208, 305, 620
BciT130I	CCWGG	3 cut(s)	480, 966, 1118
BciVI	GTATCC	1 cut(s)	813
BcnI	CCSGG	3 cut(s)	190, 191, 652
BcoDI	GTCTC	4 cut(s)	174, 502, 694, 953
BfaI	CTAG	1 cut(s)	1107
BfrI	CTTAAG	1 cut(s)	100
BfuI	GTATCC	1 cut(s)	813
BisI	GCNGC	7 cut(s)	175, 178, 234, 255, 354, 442, 1087
BlsI	GCNGC	7 cut(s)	176, 179, 235, 256, 355, 443, 1088
Bme1390I	CCNGG	6 cut(s)	190, 191, 480, 652, 966, 1118
BmeT110I	CYCGRG	1 cut(s)	189
BmgBI	CACGTC	1 cut(s)	399
BmgT120I	GGNCC	2 cut(s)	187, 476
BmiI	GGNNCC	1 cut(s)	295
BmrFI	CCNGG	6 cut(s)	190, 191, 480, 652, 966, 1118
BmsI	GCATC	2 cut(s)	537, 871
BpiI	GAAGAC	1 cut(s)	725
BplI	GAGNNNNNCTC	4 cut(s)	992, 1024, 1054, 1086
BpmI	CTGGAG	1 cut(s)	440
BpuMI	CCSGG	3 cut(s)	190, 191, 652
Bsa29I	ATCGAT	1 cut(s)	300
BsaI	GGTCTC	3 cut(s)	174, 502, 953
BsaJI	CCNNGG	4 cut(s)	189, 651, 965, 1116
BsaWI	WCCGGW	1 cut(s)	1072
BsaXI	ACNNNNNCTCC	6 cut(s)	203, 233, 455, 485, 674, 704
Bsc4I	CCNNNNNNNGG	2 cut(s)	195, 786
Bse1I	ACTGG	2 cut(s)	278, 423
Bse3DI	GCAATG	1 cut(s)	1022
BseBI	CCWGG	3 cut(s)	480, 966, 1118
BseCI	ATCGAT	1 cut(s)	300
BseDI	CCNNGG	4 cut(s)	189, 651, 965, 1116
BseGI	GGATG	1 cut(s)	862
BseLI	CCNNNNNNNGG	2 cut(s)	195, 786
BseMI	GCAATG	1 cut(s)	1022
BseMII	CTCAG	3 cut(s)	964, 1023, 1052
BseNI	ACTGG	2 cut(s)	278, 423
BseRI	GAGGAG	1 cut(s)	996
BseXI	GCAGC	3 cut(s)	164, 266, 428
BsgI	GTGCAG	1 cut(s)	273
BshFI	GGCC	3 cut(s)	188, 478, 650
BshNI	GGYRCC	1 cut(s)	293
BshVI	ATCGAT	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	1060
BsiHKCI	CYCGRG	1 cut(s)	189
BsiSI	CCGG	5 cut(s)	185, 190, 651, 936, 1073
BslFI	GGGAC	4 cut(s)	141, 739, 806, 1019
BslI	CCNNNNNNNGG	2 cut(s)	195, 786
BsmAI	GTCTC	4 cut(s)	174, 502, 694, 953
BsmBI	CGTCTC	1 cut(s)	694
BsmFI	GGGAC	4 cut(s)	141, 739, 806, 1019
BsmI	GAATGC	2 cut(s)	994, 1135
BsnI	GGCC	3 cut(s)	188, 478, 650
Bso31I	GGTCTC	3 cut(s)	174, 502, 953
BsoBI	CYCGRG	1 cut(s)	189
Bsp1286I	GDGCHC	2 cut(s)	416, 1060
Bsp1407I	TGTACA	1 cut(s)	1077
Bsp143I	GATC	6 cut(s)	301, 338, 797, 841, 857, 884
BspACI	CCGC	9 cut(s)	175, 233, 236, 353, 392, 667, 787, 1003, 1086
BspANI	GGCC	3 cut(s)	188, 478, 650
BspCNI	CTCAG	3 cut(s)	963, 1022, 1053
BspDI	ATCGAT	1 cut(s)	300
BspLI	GGNNCC	1 cut(s)	295
BspPI	GGATC	5 cut(s)	296, 346, 805, 865, 879
BspT107I	GGYRCC	1 cut(s)	293
BspTI	CTTAAG	1 cut(s)	100
BspTNI	GGTCTC	3 cut(s)	174, 502, 953
BsrBI	CCGCTC	2 cut(s)	353, 1003
BsrDI	GCAATG	1 cut(s)	1022
BsrGI	TGTACA	1 cut(s)	1077
BsrI	ACTGG	2 cut(s)	278, 423
BssECI	CCNNGG	4 cut(s)	189, 651, 965, 1116
BssMI	GATC	6 cut(s)	301, 338, 797, 841, 857, 884
Bst2UI	CCWGG	3 cut(s)	480, 966, 1118
Bst4CI	ACNGT	2 cut(s)	33, 168
Bst6I	CTCTTC	1 cut(s)	870
BstAFI	CTTAAG	1 cut(s)	100
BstAUI	TGTACA	1 cut(s)	1077
BstC8I	GCNNGC	1 cut(s)	439
BstDEI	CTNAG	3 cut(s)	950, 1009, 1061
BstF5I	GGATG	1 cut(s)	862
BstHHI	GCGC	3 cut(s)	446, 854, 1015
BstKTI	GATC	6 cut(s)	304, 341, 800, 844, 860, 887
BstMAI	GTCTC	4 cut(s)	174, 502, 694, 953
BstMBI	GATC	6 cut(s)	301, 338, 797, 841, 857, 884
BstMWI	GCNNNNNNNGC	7 cut(s)	96, 230, 443, 868, 941, 1000, 1141
BstNI	CCWGG	3 cut(s)	480, 966, 1118
BstNSI	RCATGY	3 cut(s)	45, 66, 647
BstSCI	CCNGG	6 cut(s)	188, 189, 478, 650, 964, 1116
BstV1I	GCAGC	3 cut(s)	164, 266, 428
BstV2I	GAAGAC	1 cut(s)	725
BstX2I	RGATCY	1 cut(s)	884
BstXI	CCANNNNNNTGG	1 cut(s)	558
BstYI	RGATCY	1 cut(s)	884
Bsu15I	ATCGAT	1 cut(s)	300
BsuI	GTATCC	1 cut(s)	813
BsuRI	GGCC	3 cut(s)	188, 478, 650
BsuTUI	ATCGAT	1 cut(s)	300
BtrI	CACGTC	1 cut(s)	399
BtsCI	GGATG	1 cut(s)	862
BtsI	GCAGTG	2 cut(s)	253, 264
BtsIMutI	CAGTG	4 cut(s)	253, 264, 285, 416
Cac8I	GCNNGC	1 cut(s)	439
CfoI	GCGC	3 cut(s)	446, 854, 1015
Cfr13I	GGNCC	2 cut(s)	187, 476
Cfr9I	CCCGGG	1 cut(s)	189
ClaI	ATCGAT	1 cut(s)	300
Csp6I	GTAC	2 cut(s)	82, 1078
CviAII	CATG	4 cut(s)	42, 63, 566, 644
CviQI	GTAC	2 cut(s)	82, 1078
DdeI	CTNAG	3 cut(s)	950, 1009, 1061
DpnI	GATC	6 cut(s)	303, 340, 799, 843, 859, 886
DpnII	GATC	6 cut(s)	301, 338, 797, 841, 857, 884
EaeI	YGGCCR	1 cut(s)	648
Eam1104I	CTCTTC	1 cut(s)	870
EarI	CTCTTC	1 cut(s)	870
Eco24I	GRGCYC	1 cut(s)	416
Eco31I	GGTCTC	3 cut(s)	174, 502, 953
Eco88I	CYCGRG	1 cut(s)	189
EcoRII	CCWGG	3 cut(s)	478, 964, 1116
EcoT38I	GRGCYC	1 cut(s)	416
Esp3I	CGTCTC	1 cut(s)	694
FaeI	CATG	4 cut(s)	45, 66, 569, 647
FaiI	YATR	8 cut(s)	43, 64, 137, 139, 144, 567, 581, 645
FaqI	GGGAC	4 cut(s)	141, 739, 806, 1019
FatI	CATG	4 cut(s)	41, 62, 565, 643
FauI	CCCGC	2 cut(s)	229, 996
Fnu4HI	GCNGC	7 cut(s)	175, 178, 234, 255, 354, 442, 1087
FokI	GGATG	1 cut(s)	849
FriOI	GRGCYC	1 cut(s)	416
Fsp4HI	GCNGC	7 cut(s)	175, 178, 234, 255, 354, 442, 1087
FspBI	CTAG	1 cut(s)	1107
GlaI	GCGC	3 cut(s)	445, 853, 1014
GluI	GCNGC	7 cut(s)	175, 178, 234, 255, 354, 442, 1087
GsuI	CTGGAG	1 cut(s)	440
HaeIII	GGCC	3 cut(s)	188, 478, 650
HapII	CCGG	5 cut(s)	185, 190, 651, 936, 1073
HhaI	GCGC	3 cut(s)	446, 854, 1015
Hin1II	CATG	4 cut(s)	45, 66, 569, 647
Hin6I	GCGC	3 cut(s)	444, 852, 1013
HinP1I	GCGC	3 cut(s)	444, 852, 1013
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HindIII	AAGCTT	1 cut(s)	921
HinfI	GANTC	6 cut(s)	53, 328, 363, 632, 1007, 1099
HpaII	CCGG	5 cut(s)	185, 190, 651, 936, 1073
HphI	GGTGA	4 cut(s)	406, 627, 641, 1039
Hpy166II	GTNNAC	2 cut(s)	12, 1078
Hpy188III	TCNNGA	1 cut(s)	1107
Hpy8I	GTNNAC	2 cut(s)	12, 1078
Hpy99I	CGWCG	2 cut(s)	168, 754
HpyAV	CCTTC	4 cut(s)	11, 352, 906, 1113
HpyCH4III	ACNGT	2 cut(s)	33, 168
HpyCH4IV	ACGT	3 cut(s)	398, 622, 699
HpyCH4V	TGCA	2 cut(s)	254, 1020
HpyF10VI	GCNNNNNNNGC	7 cut(s)	96, 230, 443, 868, 941, 1000, 1141
HpyF3I	CTNAG	3 cut(s)	950, 1009, 1061
HpySE526I	ACGT	3 cut(s)	398, 622, 699
Hsp92II	CATG	4 cut(s)	45, 66, 569, 647
HspAI	GCGC	3 cut(s)	444, 852, 1013
Kzo9I	GATC	6 cut(s)	301, 338, 797, 841, 857, 884
LmnI	GCTCC	2 cut(s)	350, 1075
Lsp1109I	GCAGC	3 cut(s)	164, 266, 428
LweI	GCATC	2 cut(s)	537, 871
MaeI	CTAG	1 cut(s)	1107
MaeII	ACGT	3 cut(s)	398, 622, 699
MaeIII	GTNAC	2 cut(s)	259, 394
MalI	GATC	6 cut(s)	303, 340, 799, 843, 859, 886
MbiI	CCGCTC	2 cut(s)	353, 1003
MboI	GATC	6 cut(s)	301, 338, 797, 841, 857, 884
MboII	GAAGA	2 cut(s)	725, 887
MflI	RGATCY	1 cut(s)	884
MhlI	GDGCHC	2 cut(s)	416, 1060
MluCI	AATT	3 cut(s)	116, 145, 694
MlyI	GAGTC	3 cut(s)	62, 1001, 1108
MroXI	GAANNNNTTC	1 cut(s)	362
MseI	TTAA	2 cut(s)	101, 201
MslI	CAYNNNNRTG	2 cut(s)	67, 1025
MspA1I	CMGCKG	1 cut(s)	177
MspCI	CTTAAG	1 cut(s)	100
MspI	CCGG	5 cut(s)	185, 190, 651, 936, 1073
MspR9I	CCNGG	6 cut(s)	190, 191, 480, 652, 966, 1118
Mva1269I	GAATGC	2 cut(s)	994, 1135
MvaI	CCWGG	3 cut(s)	480, 966, 1118
MwoI	GCNNNNNNNGC	7 cut(s)	96, 230, 443, 868, 941, 1000, 1141
NciI	CCSGG	3 cut(s)	190, 191, 652
NdeII	GATC	6 cut(s)	301, 338, 797, 841, 857, 884
NlaIII	CATG	4 cut(s)	45, 66, 569, 647
NlaIV	GGNNCC	1 cut(s)	295
NmuCI	GTSAC	2 cut(s)	259, 394
NspI	RCATGY	3 cut(s)	45, 66, 647
OliI	CACNNNNGTG	1 cut(s)	1025
PciI	ACATGT	3 cut(s)	41, 62, 643
PcsI	WCGNNNNNNNCGW	1 cut(s)	684
PctI	GAATGC	2 cut(s)	994, 1135
PdmI	GAANNNNTTC	1 cut(s)	362
PfeI	GAWTC	3 cut(s)	328, 363, 632
PflFI	GACNNNGTC	1 cut(s)	31
PkrI	GCNGC	7 cut(s)	176, 179, 235, 256, 355, 443, 1088
PleI	GAGTC	3 cut(s)	61, 1001, 1107
PpsI	GAGTC	3 cut(s)	61, 1001, 1107
PscI	ACATGT	3 cut(s)	41, 62, 643
PshBI	ATTAAT	1 cut(s)	201
Psp6I	CCWGG	3 cut(s)	478, 964, 1116
PspGI	CCWGG	3 cut(s)	478, 964, 1116
PspN4I	GGNNCC	1 cut(s)	295
PspPI	GGNCC	2 cut(s)	187, 476
PsuI	RGATCY	1 cut(s)	884
PsyI	GACNNNGTC	1 cut(s)	31
RsaI	GTAC	2 cut(s)	83, 1079
RsaNI	GTAC	2 cut(s)	82, 1078
RseI	CAYNNNNRTG	2 cut(s)	67, 1025
SaqAI	TTAA	2 cut(s)	101, 201
SatI	GCNGC	7 cut(s)	175, 178, 234, 255, 354, 442, 1087
Sau3AI	GATC	6 cut(s)	301, 338, 797, 841, 857, 884
Sau96I	GGNCC	2 cut(s)	187, 476
SchI	GAGTC	3 cut(s)	62, 1001, 1108
ScrFI	CCNGG	6 cut(s)	190, 191, 480, 652, 966, 1118
SduI	GDGCHC	2 cut(s)	416, 1060
SfaNI	GCATC	2 cut(s)	537, 871
SmaI	CCCGGG	1 cut(s)	191
SmiMI	CAYNNNNRTG	2 cut(s)	67, 1025
SmlI	CTYRAG	1 cut(s)	100
SmoI	CTYRAG	1 cut(s)	100
Sse9I	AATT	3 cut(s)	116, 145, 694
SsiI	CCGC	9 cut(s)	175, 233, 236, 353, 392, 667, 787, 1003, 1086
SspMI	CTAG	1 cut(s)	1107
StyD4I	CCNGG	6 cut(s)	188, 189, 478, 650, 964, 1116
TaaI	ACNGT	2 cut(s)	33, 168
TaiI	ACGT	3 cut(s)	401, 625, 702
TaqI	TCGA	8 cut(s)	300, 341, 545, 813, 873, 918, 1036, 1043
TasI	AATT	3 cut(s)	116, 145, 694
TatI	WGTACW	1 cut(s)	1077
TauI	GCSGC	4 cut(s)	177, 236, 356, 1089
TfiI	GAWTC	3 cut(s)	328, 363, 632
Tru1I	TTAA	2 cut(s)	101, 201
Tru9I	TTAA	2 cut(s)	101, 201
TscAI	CASTG	4 cut(s)	253, 264, 285, 423
TseFI	GTSAC	2 cut(s)	259, 394
TseI	GCWGC	3 cut(s)	177, 254, 441
Tsp45I	GTSAC	2 cut(s)	259, 394
TspDTI	ATGAA	1 cut(s)	888
TspGWI	ACGGA	3 cut(s)	29, 351, 738
TspMI	CCCGGG	1 cut(s)	189
TspRI	CASTG	4 cut(s)	253, 264, 285, 423
Tth111I	GACNNNGTC	1 cut(s)	31
Vha464I	CTTAAG	1 cut(s)	100
VspI	ATTAAT	1 cut(s)	201
XbaI	TCTAGA	1 cut(s)	1106
XceI	RCATGY	3 cut(s)	45, 66, 647
XmaI	CCCGGG	1 cut(s)	189
XmnI	GAANNNNTTC	1 cut(s)	362
XspI	CTAG	1 cut(s)	1107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.