Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000161.1

Orthogroup ID

OG0018220

Physical Location & Seq

Genomic Coordinates Forward (+)

105650 .. 108426

Gene Structure 2777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000161.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atggagcagggatggagatggacgagcaaaagaggatatgatctgttggacttaccaaacgcagaagaaaatcccaaattggttacgaaacgagtgcggaacatcgtctccgattacttcctctgccacctccaagtccgattacttcgtcttctttatttttctctgtcgtccctctgccctcaatctctgatcggcggttcgctagatcacgcagacgaggaaagactcattcggagcggtgatcggcggttcgctagatcacatccgaagctcgaagagattagatccagtaggttttcgtcatcggagagaaggctcgaagctttggataaagccggaagtgctggtctccgcttcagaactcctggggttttaggcagacgaggaaagactcattcggagcgggactcgacgcaaagcactccggcaagaaatagagcttcgattggaggttatgcactgagcaaagctccggtgtacaatggcggcatagcagggagtccttcaagaaaatcccgggagattccggtggggaattcggatgttgatttggtgattggatatagggttaaggttttggtggatttgatttgtttgatttgtgttttgagttttaggtactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

208

Amino Acids

23.38

Weight (kDa)

10.01

Isoelectric Point (pI)

61.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018220)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007560 RLG00000028271 RLG00000030525
rosa_multiflora	Rmu_sc0000161.1_g000023 Rmu_sc0001190.1_g000013 Rmu_sc0003961.1_g000003 Rmu_sc0005514.1_g000024 Rmu_sc0007061.1_g000012
rosa_samantha	Rh2CG458700 Rh5CG209200
rosa_wichuraiana	Rw4G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	240, 406
AciI	CCGC	7 cut(s)	97, 198, 240, 250, 355, 406, 489
AclWI	GGATC	1 cut(s)	282
AcsI	RAATTY	1 cut(s)	538
AcuI	CTGAAG	1 cut(s)	343
AfaI	GTAC	2 cut(s)	482, 623
AgsI	TTSAA	1 cut(s)	510
AjnI	CCWGG	1 cut(s)	367
AloI	GAACNNNNNNTCC	2 cut(s)	92, 124
AluBI	AGCT	4 cut(s)	274, 326, 443, 473
AluI	AGCT	4 cut(s)	274, 326, 443, 473
Alw26I	GTCTC	2 cut(s)	112, 356
AlwI	GGATC	1 cut(s)	282
Ama87I	CYCGRG	1 cut(s)	519
ApoI	RAATTY	1 cut(s)	538
AsuC2I	CCSGG	2 cut(s)	520, 521
AsuHPI	GGTGA	2 cut(s)	254, 568
AvaI	CYCGRG	1 cut(s)	519
BbsI	GAAGAC	1 cut(s)	143
BccI	CCATC	2 cut(s)	6, 12
BcgI	CGANNNNNNTGC	2 cut(s)	76, 110
BciT130I	CCWGG	1 cut(s)	369
BcnI	CCSGG	2 cut(s)	520, 521
BcoDI	GTCTC	2 cut(s)	112, 356
BfaI	CTAG	2 cut(s)	206, 258
BisI	GCNGC	1 cut(s)	490
BlsI	GCNGC	1 cut(s)	491
Bme1390I	CCNGG	3 cut(s)	369, 520, 521
BmeT110I	CYCGRG	1 cut(s)	519
BmrFI	CCNGG	3 cut(s)	369, 520, 521
BpiI	GAAGAC	1 cut(s)	143
BplI	GAGNNNNNCTC	4 cut(s)	395, 427, 457, 489
BpuMI	CCSGG	2 cut(s)	520, 521
BsaI	GGTCTC	1 cut(s)	356
BsaJI	CCNNGG	2 cut(s)	368, 519
BsaWI	WCCGGW	2 cut(s)	475, 529
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bse1I	ACTGG	1 cut(s)	291
BseBI	CCWGG	1 cut(s)	369
BseDI	CCNNGG	2 cut(s)	368, 519
BseGI	GGATG	3 cut(s)	17, 265, 550
BseMII	CTCAG	1 cut(s)	455
BseNI	ACTGG	1 cut(s)	291
BsiHKCI	CYCGRG	1 cut(s)	519
BsiSI	CCGG	5 cut(s)	339, 428, 476, 520, 530
BslFI	GGGAC	2 cut(s)	157, 422
BsmAI	GTCTC	2 cut(s)	112, 356
BsmBI	CGTCTC	1 cut(s)	112
BsmFI	GGGAC	2 cut(s)	157, 422
Bso31I	GGTCTC	1 cut(s)	356
BsoBI	CYCGRG	1 cut(s)	519
Bsp1407I	TGTACA	1 cut(s)	480
Bsp143I	GATC	6 cut(s)	40, 192, 208, 244, 260, 287
BspACI	CCGC	7 cut(s)	97, 198, 240, 250, 355, 406, 489
BspCNI	CTCAG	1 cut(s)	456
BspPI	GGATC	1 cut(s)	282
BspTNI	GGTCTC	1 cut(s)	356
BsrBI	CCGCTC	2 cut(s)	240, 406
BsrGI	TGTACA	1 cut(s)	480
BsrI	ACTGG	1 cut(s)	291
BssECI	CCNNGG	2 cut(s)	368, 519
BssMI	GATC	6 cut(s)	40, 192, 208, 244, 260, 287
Bst2UI	CCWGG	1 cut(s)	369
Bst6I	CTCTTC	1 cut(s)	273
BstAUI	TGTACA	1 cut(s)	480
BstDEI	CTNAG	1 cut(s)	464
BstF5I	GGATG	3 cut(s)	17, 265, 550
BstKTI	GATC	6 cut(s)	43, 195, 211, 247, 263, 290
BstMAI	GTCTC	2 cut(s)	112, 356
BstMBI	GATC	6 cut(s)	40, 192, 208, 244, 260, 287
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNI	CCWGG	1 cut(s)	369
BstSCI	CCNGG	3 cut(s)	367, 518, 519
BstV2I	GAAGAC	1 cut(s)	143
BstX2I	RGATCY	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	287
BtsCI	GGATG	3 cut(s)	17, 265, 550
BtsIMutI	CAGTG	1 cut(s)	461
Cfr9I	CCCGGG	1 cut(s)	519
CseI	GACGC	1 cut(s)	424
Csp6I	GTAC	2 cut(s)	481, 622
CviJI	RGCY	6 cut(s)	274, 319, 326, 338, 443, 473
CviKI_1	RGCY	6 cut(s)	274, 319, 326, 338, 443, 473
CviQI	GTAC	2 cut(s)	481, 622
DdeI	CTNAG	1 cut(s)	464
DpnI	GATC	6 cut(s)	42, 194, 210, 246, 262, 289
DpnII	GATC	6 cut(s)	40, 192, 208, 244, 260, 287
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Eco31I	GGTCTC	1 cut(s)	356
Eco57I	CTGAAG	1 cut(s)	343
Eco88I	CYCGRG	1 cut(s)	519
EcoRI	GAATTC	1 cut(s)	538
EcoRII	CCWGG	1 cut(s)	367
Esp3I	CGTCTC	1 cut(s)	112
FaiI	YATR	4 cut(s)	39, 459, 494, 567
FaqI	GGGAC	2 cut(s)	157, 422
FauI	CCCGC	1 cut(s)	399
Fnu4HI	GCNGC	1 cut(s)	490
FokI	GGATG	3 cut(s)	24, 252, 557
Fsp4HI	GCNGC	1 cut(s)	490
FspBI	CTAG	2 cut(s)	206, 258
GluI	GCNGC	1 cut(s)	490
HapII	CCGG	5 cut(s)	339, 428, 476, 520, 530
HgaI	GACGC	1 cut(s)	424
HindIII	AAGCTT	1 cut(s)	324
HinfI	GANTC	5 cut(s)	228, 394, 410, 502, 526
HpaII	CCGG	5 cut(s)	339, 428, 476, 520, 530
HphI	GGTGA	2 cut(s)	254, 568
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	9 cut(s)	112, 140, 192, 237, 270, 310, 362, 403, 544
Hpy188III	TCNNGA	1 cut(s)	510
Hpy8I	GTNNAC	1 cut(s)	481
Hpy99I	CGWCG	1 cut(s)	418
HpyAV	CCTTC	2 cut(s)	309, 516
HpyCH4V	TGCA	1 cut(s)	461
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	1 cut(s)	464
Kzo9I	GATC	6 cut(s)	40, 192, 208, 244, 260, 287
LmnI	GCTCC	4 cut(s)	4, 237, 403, 478
MaeI	CTAG	2 cut(s)	206, 258
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	6 cut(s)	42, 194, 210, 246, 262, 289
MbiI	CCGCTC	2 cut(s)	240, 406
MboI	GATC	6 cut(s)	40, 192, 208, 244, 260, 287
MboII	GAAGA	3 cut(s)	77, 143, 290
MflI	RGATCY	1 cut(s)	287
MluCI	AATT	2 cut(s)	77, 538
MlyI	GAGTC	4 cut(s)	222, 388, 404, 511
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	8 cut(s)	26, 131, 140, 185, 192, 214, 380, 446
MseI	TTAA	1 cut(s)	573
MspI	CCGG	5 cut(s)	339, 428, 476, 520, 530
MspR9I	CCNGG	3 cut(s)	369, 520, 521
MvaI	CCWGG	1 cut(s)	369
MwoI	GCNNNNNNNGC	1 cut(s)	344
NciI	CCSGG	2 cut(s)	520, 521
NdeII	GATC	6 cut(s)	40, 192, 208, 244, 260, 287
PfeI	GAWTC	1 cut(s)	526
PkrI	GCNGC	1 cut(s)	491
PleI	GAGTC	4 cut(s)	222, 388, 404, 510
PpsI	GAGTC	4 cut(s)	222, 388, 404, 510
Psp6I	CCWGG	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	367
PsuI	RGATCY	1 cut(s)	287
RsaI	GTAC	2 cut(s)	482, 623
RsaNI	GTAC	2 cut(s)	481, 622
SaqAI	TTAA	1 cut(s)	573
SatI	GCNGC	1 cut(s)	490
Sau3AI	GATC	6 cut(s)	40, 192, 208, 244, 260, 287
SchI	GAGTC	4 cut(s)	222, 388, 404, 511
ScrFI	CCNGG	3 cut(s)	369, 520, 521
SetI	ASST	9 cut(s)	132, 276, 299, 328, 445, 457, 475, 579, 623
SmaI	CCCGGG	1 cut(s)	521
Sse9I	AATT	2 cut(s)	77, 538
SsiI	CCGC	7 cut(s)	97, 198, 240, 250, 355, 406, 489
SspMI	CTAG	2 cut(s)	206, 258
StyD4I	CCNGG	3 cut(s)	367, 518, 519
TaqI	TCGA	4 cut(s)	276, 321, 413, 446
TasI	AATT	2 cut(s)	77, 538
TatI	WGTACW	1 cut(s)	480
TauI	GCSGC	1 cut(s)	492
TfiI	GAWTC	1 cut(s)	526
Tru1I	TTAA	1 cut(s)	573
Tru9I	TTAA	1 cut(s)	573
TscAI	CASTG	1 cut(s)	468
TspMI	CCCGGG	1 cut(s)	519
TspRI	CASTG	1 cut(s)	468
XapI	RAATTY	1 cut(s)	538
XmaI	CCCGGG	1 cut(s)	519
XspI	CTAG	2 cut(s)	206, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.