Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0018220

Physical Location & Seq

Genomic Coordinates Reverse (-)

62934737 .. 62938005

Gene Structure 3269 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030525

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTGCATTGAGGGGCTGCTGGCAGAACATCGTCTCCGATTACGTCCTCTGCCACCTCCAAGTCCGATTACTTCGTCTTCTTTATCTTTCTCCGTCGTCCCTCTGCCCTCAATCTCCGATCGGCGGTGCGCTGGATCGCATCTGAAGCTCGAAGTCGTCCCTCTGCCCTCAATCTCCGATCGGTGGTGCGCTGGATCGCATCCGAAGCTCGAAGAGGTTAGATCCGGTAGGTTTTCCTTATCGGAGAGAAGGCTCGAAGCTTTGAATAAAGCCGGAAGTGCTGGTCTCAGCTTCGGAACTCCTGGGGTTTTAGGCAGAGGAAGAAAGACGCATCCGGAGCGGGACTCGGCGCAAAGCACTCCAGCGAGAAATCGAGCTTCGATTGGAGGTTGTGCGCTGAGCAAAGCTCCGGTGTACAATGGCAGCAGAGCAGGGAGTCCTTCTAGAAAATCCCGGGAGATTCCGGTGGGGAATTCGGAGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

162

Amino Acids

17.19

Weight (kDa)

10.78

Isoelectric Point (pI)

65.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018220)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007560 RLG00000028271 RLG00000030525
rosa_multiflora	Rmu_sc0000161.1_g000023 Rmu_sc0001190.1_g000013 Rmu_sc0003961.1_g000003 Rmu_sc0005514.1_g000024 Rmu_sc0007061.1_g000012
rosa_samantha	Rh2CG458700 Rh5CG209200
rosa_wichuraiana	Rw4G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	340
AccIII	TCCGGA	1 cut(s)	334
AciI	CCGC	2 cut(s)	124, 340
AclWI	GGATC	3 cut(s)	142, 202, 216
AcsI	RAATTY	1 cut(s)	472
AcuI	CTGAAG	1 cut(s)	164
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	2 cut(s)	123, 183
AgsI	TTSAA	1 cut(s)	265
AjnI	CCWGG	1 cut(s)	301
AloI	GAACNNNNNNTCC	2 cut(s)	18, 50
AluBI	AGCT	6 cut(s)	148, 208, 260, 291, 377, 407
AluI	AGCT	6 cut(s)	148, 208, 260, 291, 377, 407
Alw26I	GTCTC	2 cut(s)	38, 290
AlwI	GGATC	3 cut(s)	142, 202, 216
Ama87I	CYCGRG	1 cut(s)	453
Aor13HI	TCCGGA	1 cut(s)	334
ApeKI	GCWGC	2 cut(s)	16, 423
ApoI	RAATTY	1 cut(s)	472
AspLEI	GCGC	4 cut(s)	131, 191, 352, 397
AsuC2I	CCSGG	2 cut(s)	454, 455
AvaI	CYCGRG	1 cut(s)	453
BbsI	GAAGAC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	3, 435
BciT130I	CCWGG	1 cut(s)	303
BcnI	CCSGG	2 cut(s)	454, 455
BcoDI	GTCTC	2 cut(s)	38, 290
BfaI	CTAG	1 cut(s)	444
BisI	GCNGC	2 cut(s)	17, 424
BlpI	GCTNAGC	1 cut(s)	398
BlsI	GCNGC	2 cut(s)	18, 425
Bme1390I	CCNGG	3 cut(s)	303, 454, 455
BmeT110I	CYCGRG	1 cut(s)	453
BmrFI	CCNGG	3 cut(s)	303, 454, 455
BmsI	GCATC	3 cut(s)	148, 208, 340
BpiI	GAAGAC	1 cut(s)	69
BplI	GAGNNNNNCTC	4 cut(s)	329, 361, 391, 423
BpmI	CTGGAG	1 cut(s)	345
Bpu1102I	GCTNAGC	1 cut(s)	398
BpuMI	CCSGG	2 cut(s)	454, 455
BsaI	GGTCTC	1 cut(s)	290
BsaJI	CCNNGG	2 cut(s)	302, 453
BsaWI	WCCGGW	4 cut(s)	224, 334, 409, 463
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 183
BseAI	TCCGGA	1 cut(s)	334
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	2 cut(s)	302, 453
BseGI	GGATG	2 cut(s)	199, 331
BseLI	CCNNNNNNNGG	2 cut(s)	123, 183
BseMII	CTCAG	2 cut(s)	301, 389
BseXI	GCAGC	2 cut(s)	3, 435
Bsh1285I	CGRYCG	2 cut(s)	121, 181
BsiEI	CGRYCG	2 cut(s)	121, 181
BsiHKCI	CYCGRG	1 cut(s)	453
BsiSI	CCGG	6 cut(s)	225, 273, 335, 410, 454, 464
BslFI	GGGAC	3 cut(s)	83, 143, 356
BslI	CCNNNNNNNGG	2 cut(s)	123, 183
BsmAI	GTCTC	2 cut(s)	38, 290
BsmBI	CGTCTC	1 cut(s)	38
BsmFI	GGGAC	3 cut(s)	83, 143, 356
Bso31I	GGTCTC	1 cut(s)	290
BsoBI	CYCGRG	1 cut(s)	453
Bsp13I	TCCGGA	1 cut(s)	334
Bsp1407I	TGTACA	1 cut(s)	414
Bsp143I	GATC	5 cut(s)	118, 134, 178, 194, 221
Bsp1720I	GCTNAGC	1 cut(s)	398
BspACI	CCGC	2 cut(s)	124, 340
BspCNI	CTCAG	2 cut(s)	300, 390
BspEI	TCCGGA	1 cut(s)	334
BspPI	GGATC	3 cut(s)	142, 202, 216
BspTNI	GGTCTC	1 cut(s)	290
BsrBI	CCGCTC	1 cut(s)	340
BsrGI	TGTACA	1 cut(s)	414
BssECI	CCNNGG	2 cut(s)	302, 453
BssMI	GATC	5 cut(s)	118, 134, 178, 194, 221
Bst2UI	CCWGG	1 cut(s)	303
Bst6I	CTCTTC	1 cut(s)	207
BstAUI	TGTACA	1 cut(s)	414
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	2 cut(s)	287, 398
BstF5I	GGATG	2 cut(s)	199, 331
BstHHI	GCGC	4 cut(s)	131, 191, 352, 397
BstKTI	GATC	5 cut(s)	121, 137, 181, 197, 224
BstMAI	GTCTC	2 cut(s)	38, 290
BstMBI	GATC	5 cut(s)	118, 134, 178, 194, 221
BstMCI	CGRYCG	2 cut(s)	121, 181
BstMWI	GCNNNNNNNGC	4 cut(s)	145, 205, 278, 337
BstNI	CCWGG	1 cut(s)	303
BstSCI	CCNGG	3 cut(s)	301, 452, 453
BstV1I	GCAGC	2 cut(s)	3, 435
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
BtsCI	GGATG	2 cut(s)	199, 331
Cac8I	GCNNGC	1 cut(s)	21
CfoI	GCGC	4 cut(s)	131, 191, 352, 397
Cfr9I	CCCGGG	1 cut(s)	453
CseI	GACGC	1 cut(s)	337
Csp6I	GTAC	1 cut(s)	415
CviJI	RGCY	9 cut(s)	16, 148, 208, 253, 260, 272, 291, 377, 407
CviKI_1	RGCY	9 cut(s)	16, 148, 208, 253, 260, 272, 291, 377, 407
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	2 cut(s)	287, 398
DpnI	GATC	5 cut(s)	120, 136, 180, 196, 223
DpnII	GATC	5 cut(s)	118, 134, 178, 194, 221
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco31I	GGTCTC	1 cut(s)	290
Eco57I	CTGAAG	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	453
EcoRI	GAATTC	1 cut(s)	472
EcoRII	CCWGG	1 cut(s)	301
Esp3I	CGTCTC	1 cut(s)	38
FaqI	GGGAC	3 cut(s)	83, 143, 356
FauI	CCCGC	1 cut(s)	333
Fnu4HI	GCNGC	2 cut(s)	17, 424
FokI	GGATG	2 cut(s)	186, 318
Fsp4HI	GCNGC	2 cut(s)	17, 424
FspBI	CTAG	1 cut(s)	444
GlaI	GCGC	4 cut(s)	130, 190, 351, 396
GluI	GCNGC	2 cut(s)	17, 424
GsuI	CTGGAG	1 cut(s)	345
HapII	CCGG	6 cut(s)	225, 273, 335, 410, 454, 464
HgaI	GACGC	1 cut(s)	337
HhaI	GCGC	4 cut(s)	131, 191, 352, 397
Hin6I	GCGC	4 cut(s)	129, 189, 350, 395
HinP1I	GCGC	4 cut(s)	129, 189, 350, 395
HindIII	AAGCTT	1 cut(s)	258
HinfI	GANTC	3 cut(s)	344, 436, 460
HpaII	CCGG	6 cut(s)	225, 273, 335, 410, 454, 464
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188I	TCNGA	9 cut(s)	38, 66, 118, 144, 178, 204, 244, 296, 478
Hpy188III	TCNNGA	2 cut(s)	335, 444
Hpy8I	GTNNAC	1 cut(s)	415
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	2 cut(s)	243, 450
HpyCH4IV	ACGT	1 cut(s)	43
HpyCH4V	TGCA	1 cut(s)	6
HpyF10VI	GCNNNNNNNGC	4 cut(s)	145, 205, 278, 337
HpyF3I	CTNAG	2 cut(s)	287, 398
HpySE526I	ACGT	1 cut(s)	43
HspAI	GCGC	4 cut(s)	129, 189, 350, 395
Kpn2I	TCCGGA	1 cut(s)	334
Kzo9I	GATC	5 cut(s)	118, 134, 178, 194, 221
LmnI	GCTCC	3 cut(s)	337, 412, 478
Lsp1109I	GCAGC	2 cut(s)	3, 435
LweI	GCATC	3 cut(s)	148, 208, 340
MaeI	CTAG	1 cut(s)	444
MaeII	ACGT	1 cut(s)	43
MalI	GATC	5 cut(s)	120, 136, 180, 196, 223
MbiI	CCGCTC	1 cut(s)	340
MboI	GATC	5 cut(s)	118, 134, 178, 194, 221
MboII	GAAGA	3 cut(s)	69, 224, 333
MflI	RGATCY	1 cut(s)	221
MluCI	AATT	1 cut(s)	472
MlyI	GAGTC	2 cut(s)	338, 445
MroI	TCCGGA	1 cut(s)	334
MspI	CCGG	6 cut(s)	225, 273, 335, 410, 454, 464
MspR9I	CCNGG	3 cut(s)	303, 454, 455
MvaI	CCWGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	4 cut(s)	145, 205, 278, 337
NciI	CCSGG	2 cut(s)	454, 455
NdeII	GATC	5 cut(s)	118, 134, 178, 194, 221
NmeAIII	GCCGAG	1 cut(s)	326
PfeI	GAWTC	1 cut(s)	460
PkrI	GCNGC	2 cut(s)	18, 425
Ple19I	CGATCG	2 cut(s)	121, 181
PleI	GAGTC	2 cut(s)	338, 444
PpsI	GAGTC	2 cut(s)	338, 444
Psp6I	CCWGG	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	301
PsuI	RGATCY	1 cut(s)	221
PvuI	CGATCG	2 cut(s)	121, 181
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
SatI	GCNGC	2 cut(s)	17, 424
Sau3AI	GATC	5 cut(s)	118, 134, 178, 194, 221
SchI	GAGTC	2 cut(s)	338, 445
ScrFI	CCNGG	3 cut(s)	303, 454, 455
SfaNI	GCATC	3 cut(s)	148, 208, 340
SmaI	CCCGGG	1 cut(s)	455
Sse9I	AATT	1 cut(s)	472
SsiI	CCGC	2 cut(s)	124, 340
SspMI	CTAG	1 cut(s)	444
StyD4I	CCNGG	3 cut(s)	301, 452, 453
TaiI	ACGT	1 cut(s)	46
TaqI	TCGA	5 cut(s)	150, 210, 255, 373, 380
TasI	AATT	1 cut(s)	472
TatI	WGTACW	1 cut(s)	414
TfiI	GAWTC	1 cut(s)	460
TseI	GCWGC	2 cut(s)	16, 423
TspGWI	ACGGA	1 cut(s)	82
TspMI	CCCGGG	1 cut(s)	453
XapI	RAATTY	1 cut(s)	472
XbaI	TCTAGA	1 cut(s)	443
XmaI	CCCGGG	1 cut(s)	453
XspI	CTAG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.