Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003961.1

Orthogroup ID

OG0018220

Physical Location & Seq

Genomic Coordinates Forward (+)

12307 .. 14237

Gene Structure 1931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003961.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atggagtacaaaacgacgccgtccagtgaggaggagggtgggactgagaatgtggaggattatcccatggtgttgttgcaaatccctatgtgcaatgagagggagactctctctcttactctctcaatctcagttcgttgtaggaacatcatctccgattacgtcctctaccacctccaagttcgattactttatctttctctgtcgtccctctgtcctcaatctccaatctccgatcggcggtgcgctggattgcatccgaagctcaaagtcgtccgtcttccctcaatctctgatcggtggtgcgctggatcgcatccgaagctcaaagaggttagatccggtaggttttctttatcggagagaaggctcgaagctttggataaagccagaaatgctggtctcagcttcggaactcctgaggttttaggcagagagggaaagacgcattcggatcgggactcggcgcaaagcactccggccagaaatcgagctttgattggaggttgtgcgctgagcaaagctccggtgtacaatggcagcagagcagggagtccttttggaaaatcccgggagattccagtagggaattcggagcgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

200

Amino Acids

22.09

Weight (kDa)

9.23

Isoelectric Point (pI)

54.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018220)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007560 RLG00000028271 RLG00000030525
rosa_multiflora	Rmu_sc0000161.1_g000023 Rmu_sc0001190.1_g000013 Rmu_sc0003961.1_g000003 Rmu_sc0005514.1_g000024 Rmu_sc0007061.1_g000012
rosa_samantha	Rh2CG458700 Rh5CG209200
rosa_wichuraiana	Rw4G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	241
AclWI	GGATC	3 cut(s)	319, 333, 462
AcoI	YGGCCR	1 cut(s)	480
AcsI	RAATTY	1 cut(s)	589
AcyI	GRCGYC	1 cut(s)	17
AfaI	GTAC	2 cut(s)	8, 533
AfiI	CCNNNNNNNGG	1 cut(s)	240
AloI	GAACNNNNNNTCC	2 cut(s)	137, 169
AluBI	AGCT	6 cut(s)	265, 325, 377, 408, 494, 524
AluI	AGCT	6 cut(s)	265, 325, 377, 408, 494, 524
Alw26I	GTCTC	2 cut(s)	98, 407
AlwI	GGATC	3 cut(s)	319, 333, 462
Ama87I	CYCGRG	1 cut(s)	570
AoxI	GGCC	1 cut(s)	480
ApeKI	GCWGC	1 cut(s)	540
ApoI	RAATTY	1 cut(s)	589
AspLEI	GCGC	4 cut(s)	248, 308, 469, 514
AsuC2I	CCSGG	2 cut(s)	571, 572
AvaI	CYCGRG	1 cut(s)	570
AxyI	CCTNAGG	1 cut(s)	420
BbsI	GAAGAC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	552
BceAI	ACGGC	1 cut(s)	4
BcgI	CGANNNNNNTGC	2 cut(s)	437, 471
BcnI	CCSGG	2 cut(s)	571, 572
BcoDI	GTCTC	2 cut(s)	98, 407
BisI	GCNGC	1 cut(s)	541
BlpI	GCTNAGC	1 cut(s)	515
BlsI	GCNGC	1 cut(s)	542
Bme1390I	CCNGG	2 cut(s)	571, 572
BmeT110I	CYCGRG	1 cut(s)	570
BmrFI	CCNGG	2 cut(s)	571, 572
BmsI	GCATC	2 cut(s)	265, 325
BpiI	GAAGAC	1 cut(s)	272
BplI	GAGNNNNNCTC	6 cut(s)	91, 123, 95, 127, 508, 540
Bpu1102I	GCTNAGC	1 cut(s)	515
BpuMI	CCSGG	2 cut(s)	571, 572
BsaHI	GRCGYC	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	407
BsaJI	CCNNGG	2 cut(s)	66, 570
BsaWI	WCCGGW	2 cut(s)	341, 526
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse1I	ACTGG	2 cut(s)	24, 581
Bse21I	CCTNAGG	1 cut(s)	420
Bse3DI	GCAATG	1 cut(s)	100
BseDI	CCNNGG	2 cut(s)	66, 570
BseGI	GGATG	2 cut(s)	256, 316
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMI	GCAATG	1 cut(s)	100
BseMII	CTCAG	5 cut(s)	36, 144, 411, 418, 506
BseNI	ACTGG	2 cut(s)	24, 581
BseRI	GAGGAG	2 cut(s)	44, 47
BseXI	GCAGC	1 cut(s)	552
Bsh1285I	CGRYCG	1 cut(s)	238
BshFI	GGCC	1 cut(s)	482
BsiEI	CGRYCG	1 cut(s)	238
BsiHKCI	CYCGRG	1 cut(s)	570
BsiSI	CCGG	4 cut(s)	342, 479, 527, 571
BslFI	GGGAC	3 cut(s)	55, 193, 473
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmAI	GTCTC	2 cut(s)	98, 407
BsmFI	GGGAC	3 cut(s)	55, 193, 473
BsmI	GAATGC	1 cut(s)	448
BsnI	GGCC	1 cut(s)	482
Bso31I	GGTCTC	1 cut(s)	407
BsoBI	CYCGRG	1 cut(s)	570
Bsp1407I	TGTACA	1 cut(s)	531
Bsp143I	GATC	5 cut(s)	235, 295, 311, 338, 454
Bsp1720I	GCTNAGC	1 cut(s)	515
Bsp19I	CCATGG	1 cut(s)	66
BspACI	CCGC	1 cut(s)	241
BspANI	GGCC	1 cut(s)	482
BspCNI	CTCAG	5 cut(s)	37, 143, 412, 417, 507
BspPI	GGATC	3 cut(s)	319, 333, 462
BspTNI	GGTCTC	1 cut(s)	407
BsrDI	GCAATG	1 cut(s)	100
BsrGI	TGTACA	1 cut(s)	531
BsrI	ACTGG	2 cut(s)	24, 581
BssECI	CCNNGG	2 cut(s)	66, 570
BssMI	GATC	5 cut(s)	235, 295, 311, 338, 454
BssNI	GRCGYC	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	66
BstACI	GRCGYC	1 cut(s)	17
BstAUI	TGTACA	1 cut(s)	531
BstDEI	CTNAG	5 cut(s)	45, 130, 404, 420, 515
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	2 cut(s)	256, 316
BstHHI	GCGC	4 cut(s)	248, 308, 469, 514
BstKTI	GATC	5 cut(s)	238, 298, 314, 341, 457
BstMAI	GTCTC	2 cut(s)	98, 407
BstMBI	GATC	5 cut(s)	235, 295, 311, 338, 454
BstMCI	CGRYCG	1 cut(s)	238
BstMWI	GCNNNNNNNGC	3 cut(s)	262, 322, 395
BstSCI	CCNGG	2 cut(s)	569, 570
BstV1I	GCAGC	1 cut(s)	552
BstV2I	GAAGAC	1 cut(s)	272
BstX2I	RGATCY	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	338
Bsu36I	CCTNAGG	1 cut(s)	420
BsuRI	GGCC	1 cut(s)	482
BtgI	CCRYGG	1 cut(s)	66
BtsCI	GGATG	2 cut(s)	256, 316
BtsIMutI	CAGTG	1 cut(s)	31
CfoI	GCGC	4 cut(s)	248, 308, 469, 514
Cfr9I	CCCGGG	1 cut(s)	570
CseI	GACGC	2 cut(s)	25, 454
Csp6I	GTAC	2 cut(s)	7, 532
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	9 cut(s)	265, 325, 370, 377, 389, 408, 482, 494, 524
CviKI_1	RGCY	9 cut(s)	265, 325, 370, 377, 389, 408, 482, 494, 524
CviQI	GTAC	2 cut(s)	7, 532
DdeI	CTNAG	5 cut(s)	45, 130, 404, 420, 515
DpnI	GATC	5 cut(s)	237, 297, 313, 340, 456
DpnII	GATC	5 cut(s)	235, 295, 311, 338, 454
EaeI	YGGCCR	1 cut(s)	480
Eco130I	CCWWGG	1 cut(s)	66
Eco31I	GGTCTC	1 cut(s)	407
Eco81I	CCTNAGG	1 cut(s)	420
Eco88I	CYCGRG	1 cut(s)	570
EcoRI	GAATTC	1 cut(s)	589
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	1 cut(s)	70
FaiI	YATR	2 cut(s)	68, 89
FaqI	GGGAC	3 cut(s)	55, 193, 473
FatI	CATG	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	541
FokI	GGATG	2 cut(s)	243, 303
Fsp4HI	GCNGC	1 cut(s)	541
GlaI	GCGC	4 cut(s)	247, 307, 468, 513
GluI	GCNGC	1 cut(s)	541
HaeIII	GGCC	1 cut(s)	482
HapII	CCGG	4 cut(s)	342, 479, 527, 571
HgaI	GACGC	2 cut(s)	25, 454
HhaI	GCGC	4 cut(s)	248, 308, 469, 514
Hin1I	GRCGYC	1 cut(s)	17
Hin1II	CATG	1 cut(s)	70
Hin6I	GCGC	4 cut(s)	246, 306, 467, 512
HinP1I	GCGC	4 cut(s)	246, 306, 467, 512
HindIII	AAGCTT	1 cut(s)	375
HinfI	GANTC	4 cut(s)	106, 461, 553, 577
HpaII	CCGG	4 cut(s)	342, 479, 527, 571
Hpy166II	GTNNAC	1 cut(s)	532
Hpy188I	TCNGA	9 cut(s)	157, 235, 261, 295, 321, 361, 413, 454, 595
Hpy188III	TCNNGA	2 cut(s)	419, 458
Hpy8I	GTNNAC	1 cut(s)	532
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	360
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	3 cut(s)	79, 93, 256
HpyF10VI	GCNNNNNNNGC	3 cut(s)	262, 322, 395
HpyF3I	CTNAG	5 cut(s)	45, 130, 404, 420, 515
HpySE526I	ACGT	1 cut(s)	162
Hsp92I	GRCGYC	1 cut(s)	17
Hsp92II	CATG	1 cut(s)	70
HspAI	GCGC	4 cut(s)	246, 306, 467, 512
Kzo9I	GATC	5 cut(s)	235, 295, 311, 338, 454
LmnI	GCTCC	2 cut(s)	529, 595
Lsp1109I	GCAGC	1 cut(s)	552
LweI	GCATC	2 cut(s)	265, 325
MaeII	ACGT	1 cut(s)	162
MalI	GATC	5 cut(s)	237, 297, 313, 340, 456
MboI	GATC	5 cut(s)	235, 295, 311, 338, 454
MboII	GAAGA	1 cut(s)	272
MflI	RGATCY	1 cut(s)	338
MluCI	AATT	1 cut(s)	589
MlyI	GAGTC	3 cut(s)	100, 455, 562
MspI	CCGG	4 cut(s)	342, 479, 527, 571
MspR9I	CCNGG	2 cut(s)	571, 572
Mva1269I	GAATGC	1 cut(s)	448
MwoI	GCNNNNNNNGC	3 cut(s)	262, 322, 395
NciI	CCSGG	2 cut(s)	571, 572
NcoI	CCATGG	1 cut(s)	66
NdeII	GATC	5 cut(s)	235, 295, 311, 338, 454
NlaIII	CATG	1 cut(s)	70
NmeAIII	GCCGAG	1 cut(s)	443
PctI	GAATGC	1 cut(s)	448
PfeI	GAWTC	1 cut(s)	577
PflFI	GACNNNGTC	1 cut(s)	19
PkrI	GCNGC	1 cut(s)	542
Ple19I	CGATCG	1 cut(s)	238
PleI	GAGTC	3 cut(s)	100, 455, 561
PpsI	GAGTC	3 cut(s)	100, 455, 561
PsuI	RGATCY	1 cut(s)	338
PsyI	GACNNNGTC	1 cut(s)	19
PvuI	CGATCG	1 cut(s)	238
RsaI	GTAC	2 cut(s)	8, 533
RsaNI	GTAC	2 cut(s)	7, 532
SatI	GCNGC	1 cut(s)	541
Sau3AI	GATC	5 cut(s)	235, 295, 311, 338, 454
SchI	GAGTC	3 cut(s)	100, 455, 562
ScrFI	CCNGG	2 cut(s)	571, 572
SfaNI	GCATC	2 cut(s)	265, 325
SmaI	CCCGGG	1 cut(s)	572
Sse9I	AATT	1 cut(s)	589
SsiI	CCGC	1 cut(s)	241
StyD4I	CCNGG	2 cut(s)	569, 570
StyI	CCWWGG	1 cut(s)	66
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	3 cut(s)	184, 372, 490
TasI	AATT	1 cut(s)	589
TatI	WGTACW	2 cut(s)	6, 531
TfiI	GAWTC	1 cut(s)	577
TscAI	CASTG	1 cut(s)	31
TseI	GCWGC	1 cut(s)	540
TspGWI	ACGGA	1 cut(s)	266
TspMI	CCCGGG	1 cut(s)	570
TspRI	CASTG	1 cut(s)	31
Tth111I	GACNNNGTC	1 cut(s)	19
XapI	RAATTY	1 cut(s)	589
XmaI	CCCGGG	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.