Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0018220

Physical Location & Seq

Genomic Coordinates Forward (+)

24544092 .. 24554025

Gene Structure 9934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G010580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAAGCAATTAAGAAAAGAAGAAACATCTCTGGCCAAGTGTGAAGCATCCAACAAAGAATCGCATCCGAAGCTCGAAGAGATTAGATCCAGTAGGTTTTTGTCATCGGAGAGAAGGCTCGAAGCTTTGGATAAAGCCGGAAGTGCTGGTCTCCGCTTCAGAACTCCTTGGGTTTTAGGTAGACGAGGAAAGACGCATTCGGAGCGGGACTCGCCGCAAAGCACTCCGGCAAGAAATCGAGCTTCGATTGGAGGTTATGCACTGAGCAAAGCTCCAGTGTACAATGGCGGCATAGCAGGGAGTCCTTCAAGAAAATCCCGGGAGATTCCGGTGGGGAATTCGGATGTTGATTTGGTGATTGGATATAGGGTTAAGGTTTTGGTGGATTTGATTTGTTTGATTTGTGTTTTGACTTTCAGGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

141

Amino Acids

15.65

Weight (kDa)

10.01

Isoelectric Point (pI)

57.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018220)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007560 RLG00000028271 RLG00000030525
rosa_multiflora	Rmu_sc0000161.1_g000023 Rmu_sc0001190.1_g000013 Rmu_sc0003961.1_g000003 Rmu_sc0005514.1_g000024 Rmu_sc0007061.1_g000012
rosa_samantha	Rh2CG458700 Rh5CG209200
rosa_wichuraiana	Rw4G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	205
AccI	GTMKAC	1 cut(s)	181
AciI	CCGC	4 cut(s)	154, 205, 215, 288
AclWI	GGATC	1 cut(s)	81
AcoI	YGGCCR	1 cut(s)	33
AcsI	RAATTY	1 cut(s)	337
AcuI	CTGAAG	1 cut(s)	142
AfaI	GTAC	2 cut(s)	281, 422
AgsI	TTSAA	1 cut(s)	309
AluBI	AGCT	4 cut(s)	73, 125, 242, 272
AluI	AGCT	4 cut(s)	73, 125, 242, 272
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	1 cut(s)	81
AlwNI	CAGNNNCTG	1 cut(s)	423
Ama87I	CYCGRG	1 cut(s)	318
AoxI	GGCC	1 cut(s)	33
ApoI	RAATTY	1 cut(s)	337
AsuC2I	CCSGG	2 cut(s)	319, 320
AsuHPI	GGTGA	1 cut(s)	367
AvaI	CYCGRG	1 cut(s)	318
BalI	TGGCCA	1 cut(s)	35
BcnI	CCSGG	2 cut(s)	319, 320
BcoDI	GTCTC	1 cut(s)	155
BisI	GCNGC	2 cut(s)	215, 289
BlsI	GCNGC	2 cut(s)	216, 290
Bme1390I	CCNGG	2 cut(s)	319, 320
BmeT110I	CYCGRG	1 cut(s)	318
BmrFI	CCNGG	2 cut(s)	319, 320
BmsI	GCATC	2 cut(s)	56, 73
BplI	GAGNNNNNCTC	4 cut(s)	194, 226, 256, 288
BpmI	CTGGAG	1 cut(s)	258
BpuMI	CCSGG	2 cut(s)	319, 320
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	2 cut(s)	167, 318
BsaWI	WCCGGW	1 cut(s)	328
Bse1I	ACTGG	2 cut(s)	90, 275
BseDI	CCNNGG	2 cut(s)	167, 318
BseGI	GGATG	3 cut(s)	47, 64, 349
BseMII	CTCAG	1 cut(s)	254
BseNI	ACTGG	2 cut(s)	90, 275
BshFI	GGCC	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	318
BsiSI	CCGG	4 cut(s)	138, 227, 319, 329
BslFI	GGGAC	1 cut(s)	221
BsmAI	GTCTC	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	221
BsmI	GAATGC	1 cut(s)	196
BsnI	GGCC	1 cut(s)	35
Bso31I	GGTCTC	1 cut(s)	155
BsoBI	CYCGRG	1 cut(s)	318
Bsp1407I	TGTACA	1 cut(s)	279
Bsp143I	GATC	1 cut(s)	86
BspACI	CCGC	4 cut(s)	154, 205, 215, 288
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	255
BspPI	GGATC	1 cut(s)	81
BspTNI	GGTCTC	1 cut(s)	155
BsrBI	CCGCTC	1 cut(s)	205
BsrGI	TGTACA	1 cut(s)	279
BsrI	ACTGG	2 cut(s)	90, 275
BssECI	CCNNGG	2 cut(s)	167, 318
BssMI	GATC	1 cut(s)	86
BssT1I	CCWWGG	1 cut(s)	167
Bst6I	CTCTTC	1 cut(s)	72
BstAUI	TGTACA	1 cut(s)	279
BstDEI	CTNAG	1 cut(s)	263
BstF5I	GGATG	3 cut(s)	47, 64, 349
BstKTI	GATC	1 cut(s)	89
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	1 cut(s)	86
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 143, 202, 211
BstSCI	CCNGG	2 cut(s)	317, 318
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
BsuRI	GGCC	1 cut(s)	35
BtsCI	GGATG	3 cut(s)	47, 64, 349
BtsIMutI	CAGTG	2 cut(s)	260, 282
CaiI	CAGNNNCTG	1 cut(s)	423
Cfr9I	CCCGGG	1 cut(s)	318
CseI	GACGC	1 cut(s)	202
Csp6I	GTAC	2 cut(s)	280, 421
CviJI	RGCY	7 cut(s)	35, 73, 118, 125, 137, 242, 272
CviKI_1	RGCY	7 cut(s)	35, 73, 118, 125, 137, 242, 272
CviQI	GTAC	2 cut(s)	280, 421
DdeI	CTNAG	1 cut(s)	263
DpnI	GATC	1 cut(s)	88
DpnII	GATC	1 cut(s)	86
EaeI	YGGCCR	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	167
Eco31I	GGTCTC	1 cut(s)	155
Eco57I	CTGAAG	1 cut(s)	142
Eco88I	CYCGRG	1 cut(s)	318
EcoRI	GAATTC	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	167
FaiI	YATR	3 cut(s)	258, 293, 366
FaqI	GGGAC	1 cut(s)	221
FauI	CCCGC	1 cut(s)	198
FblI	GTMKAC	1 cut(s)	181
Fnu4HI	GCNGC	2 cut(s)	215, 289
FokI	GGATG	3 cut(s)	34, 51, 356
Fsp4HI	GCNGC	2 cut(s)	215, 289
GluI	GCNGC	2 cut(s)	215, 289
GsuI	CTGGAG	1 cut(s)	258
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	4 cut(s)	138, 227, 319, 329
HgaI	GACGC	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	123
HinfI	GANTC	4 cut(s)	59, 209, 301, 325
HpaII	CCGG	4 cut(s)	138, 227, 319, 329
HphI	GGTGA	1 cut(s)	367
Hpy166II	GTNNAC	2 cut(s)	182, 280
Hpy188I	TCNGA	5 cut(s)	69, 109, 161, 202, 343
Hpy188III	TCNNGA	1 cut(s)	309
Hpy8I	GTNNAC	2 cut(s)	182, 280
HpyAV	CCTTC	2 cut(s)	108, 315
HpyCH4V	TGCA	1 cut(s)	260
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 143, 202, 211
HpyF3I	CTNAG	1 cut(s)	263
Kzo9I	GATC	1 cut(s)	86
LmnI	GCTCC	2 cut(s)	202, 277
LweI	GCATC	2 cut(s)	56, 73
MalI	GATC	1 cut(s)	88
MbiI	CCGCTC	1 cut(s)	205
MboI	GATC	1 cut(s)	86
MboII	GAAGA	2 cut(s)	32, 89
MflI	RGATCY	1 cut(s)	86
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	2 cut(s)	8, 337
MluNI	TGGCCA	1 cut(s)	35
MlyI	GAGTC	2 cut(s)	203, 310
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	2 cut(s)	179, 245
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	2 cut(s)	11, 372
Msp20I	TGGCCA	1 cut(s)	35
MspI	CCGG	4 cut(s)	138, 227, 319, 329
MspR9I	CCNGG	2 cut(s)	319, 320
Mva1269I	GAATGC	1 cut(s)	196
MwoI	GCNNNNNNNGC	4 cut(s)	70, 143, 202, 211
NciI	CCSGG	2 cut(s)	319, 320
NdeII	GATC	1 cut(s)	86
PctI	GAATGC	1 cut(s)	196
PfeI	GAWTC	2 cut(s)	59, 325
PkrI	GCNGC	2 cut(s)	216, 290
PleI	GAGTC	2 cut(s)	203, 309
PpsI	GAGTC	2 cut(s)	203, 309
PstNI	CAGNNNCTG	1 cut(s)	423
PsuI	RGATCY	1 cut(s)	86
RsaI	GTAC	2 cut(s)	281, 422
RsaNI	GTAC	2 cut(s)	280, 421
SaqAI	TTAA	2 cut(s)	11, 372
SatI	GCNGC	2 cut(s)	215, 289
Sau3AI	GATC	1 cut(s)	86
SchI	GAGTC	2 cut(s)	203, 310
ScrFI	CCNGG	2 cut(s)	319, 320
SetI	ASST	9 cut(s)	75, 98, 127, 181, 244, 256, 274, 378, 422
SfaNI	GCATC	2 cut(s)	56, 73
SmaI	CCCGGG	1 cut(s)	320
Sse9I	AATT	2 cut(s)	8, 337
SsiI	CCGC	4 cut(s)	154, 205, 215, 288
StyD4I	CCNGG	2 cut(s)	317, 318
StyI	CCWWGG	1 cut(s)	167
TaqI	TCGA	4 cut(s)	75, 120, 238, 245
TasI	AATT	2 cut(s)	8, 337
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	2 cut(s)	217, 291
TfiI	GAWTC	2 cut(s)	59, 325
Tru1I	TTAA	2 cut(s)	11, 372
Tru9I	TTAA	2 cut(s)	11, 372
TscAI	CASTG	2 cut(s)	267, 282
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	318
TspRI	CASTG	2 cut(s)	267, 282
XapI	RAATTY	1 cut(s)	337
XmaI	CCCGGG	1 cut(s)	318
XmiI	GTMKAC	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.