RLG00000029062

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0009722
Physical Location & Seq
Reverse (-)
32164740 .. 32165778
1039 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029062

Sequence Viewer

Length: 309 bp
ATGGAAAGAGAAGGTCTTACTAACTTCAAGAATGGTCTCAAAGATCCTGAAAACCGGCTGTCTTCATTGGAAGAAAGCAACTGCTGCCGGTGGTGGGGGATAAGCTGTGATAATACAACTGGAGCTGTTATTGCAGCTGATCTCCATAACCCACATCCACTTCATCCATTTGAAGATTCTGCTTCCTCTGGCAGGAACTTTACCGGAAGTTCCGCTGACGGAGAATTGCACTTCTACGTGTCCACTGCGCGCCTAAACTGCAGTCCTCAGTTAGCAACCAATCAGTTGGTCGGCAAATTGCGACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0010359 GO:0012505 GO:0014070 GO:0016020 GO:0016043 GO:0016045 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031410 GO:0031982 GO:0032409 GO:0032412 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0033036 GO:0033037 GO:0033554 GO:0033993 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0042221 GO:0042545 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043269 GO:0043401 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065009 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098542 GO:0098543 GO:0098581 GO:0098657 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1903959
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LCM LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

103

Amino Acids

11.22

Weight (kDa)

5.72

Isoelectric Point (pI)

32.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 2 - 37 2.7e-07 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 250
AciI CCGC 1 cut(s) 213
AclWI GGATC 1 cut(s) 38
AfiI CCNNNNNNNGG 2 cut(s) 94, 192
AflIII ACRYGT 1 cut(s) 237
AgsI TTSAA 2 cut(s) 28, 173
AluBI AGCT 3 cut(s) 105, 125, 137
AluI AGCT 3 cut(s) 105, 125, 137
Alw26I GTCTC 1 cut(s) 41
AlwI GGATC 1 cut(s) 38
ApeKI GCWGC 2 cut(s) 84, 134
AspLEI GCGC 2 cut(s) 250, 252
BbsI GAAGAC 1 cut(s) 54
BbvI GCAGC 2 cut(s) 71, 146
BcoDI GTCTC 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 259
BisI GCNGC 2 cut(s) 85, 135
BlsI GCNGC 2 cut(s) 86, 136
BpiI GAAGAC 1 cut(s) 54
BpmI CTGGAG 1 cut(s) 141
BsaAI YACGTR 1 cut(s) 238
BsaI GGTCTC 1 cut(s) 41
BsaWI WCCGGW 1 cut(s) 203
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 192
Bse118I RCCGGY 2 cut(s) 54, 87
Bse1I ACTGG 1 cut(s) 124
BseGI GGATG 2 cut(s) 154, 163
BseLI CCNNNNNNNGG 2 cut(s) 94, 192
BseMII CTCAG 1 cut(s) 281
BseNI ACTGG 1 cut(s) 124
BsePI GCGCGC 1 cut(s) 248
BseXI GCAGC 2 cut(s) 71, 146
Bsh1236I CGCG 1 cut(s) 250
BsiSI CCGG 3 cut(s) 55, 88, 204
BslI CCNNNNNNNGG 2 cut(s) 94, 192
BsmAI GTCTC 1 cut(s) 41
Bso31I GGTCTC 1 cut(s) 41
Bsp143I GATC 2 cut(s) 43, 139
BspACI CCGC 1 cut(s) 213
BspCNI CTCAG 1 cut(s) 280
BspFNI CGCG 1 cut(s) 250
BspMAI CTGCAG 1 cut(s) 263
BspPI GGATC 1 cut(s) 38
BspTNI GGTCTC 1 cut(s) 41
BsrFI RCCGGY 2 cut(s) 54, 87
BsrI ACTGG 1 cut(s) 124
BssAI RCCGGY 2 cut(s) 54, 87
BssHII GCGCGC 1 cut(s) 248
BssMI GATC 2 cut(s) 43, 139
BstAPI GCANNNNNTGC 1 cut(s) 84
BstBAI YACGTR 1 cut(s) 238
BstC8I GCNNGC 1 cut(s) 250
BstDEI CTNAG 1 cut(s) 267
BstENI CCTNNNNNAGG 1 cut(s) 190
BstF5I GGATG 2 cut(s) 154, 163
BstFNI CGCG 1 cut(s) 250
BstHHI GCGC 2 cut(s) 250, 252
BstKTI GATC 2 cut(s) 46, 142
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 2 cut(s) 43, 139
BstMWI GCNNNNNNNGC 3 cut(s) 84, 131, 258
BstSFI CTRYAG 1 cut(s) 259
BstUI CGCG 1 cut(s) 250
BstV1I GCAGC 2 cut(s) 71, 146
BstV2I GAAGAC 1 cut(s) 54
BstX2I RGATCY 1 cut(s) 43
BstXI CCANNNNNNTGG 1 cut(s) 286
BstYI RGATCY 1 cut(s) 43
BtsCI GGATG 2 cut(s) 154, 163
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 1 cut(s) 243
Cac8I GCNNGC 1 cut(s) 250
CfoI GCGC 2 cut(s) 250, 252
Cfr10I RCCGGY 2 cut(s) 54, 87
CviJI RGCY 4 cut(s) 58, 105, 125, 137
CviKI_1 RGCY 4 cut(s) 58, 105, 125, 137
DdeI CTNAG 1 cut(s) 267
DpnI GATC 2 cut(s) 45, 141
DpnII GATC 2 cut(s) 43, 139
Eco31I GGTCTC 1 cut(s) 41
EcoNI CCTNNNNNAGG 1 cut(s) 190
FaiI YATR 1 cut(s) 147
Fnu4HI GCNGC 2 cut(s) 85, 135
FokI GGATG 2 cut(s) 141, 150
Fsp4HI GCNGC 2 cut(s) 85, 135
GlaI GCGC 2 cut(s) 249, 251
GluI GCNGC 2 cut(s) 85, 135
GsuI CTGGAG 1 cut(s) 141
HapII CCGG 3 cut(s) 55, 88, 204
HhaI GCGC 2 cut(s) 250, 252
Hin6I GCGC 2 cut(s) 248, 250
HinP1I GCGC 2 cut(s) 248, 250
HinfI GANTC 1 cut(s) 176
HpaII CCGG 3 cut(s) 55, 88, 204
Hpy166II GTNNAC 1 cut(s) 243
Hpy188III TCNNGA 2 cut(s) 28, 47
Hpy8I GTNNAC 1 cut(s) 243
HpyAV CCTTC 1 cut(s) 5
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 3 cut(s) 134, 229, 261
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 131, 258
HpyF3I CTNAG 1 cut(s) 267
HpySE526I ACGT 1 cut(s) 237
HspAI GCGC 2 cut(s) 248, 250
Kzo9I GATC 2 cut(s) 43, 139
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 7 cut(s) 60, 68, 101, 105, 174, 178, 217
Lsp1109I GCAGC 2 cut(s) 71, 146
MaeII ACGT 1 cut(s) 237
MalI GATC 2 cut(s) 45, 141
MboI GATC 2 cut(s) 43, 139
MboII GAAGA 3 cut(s) 54, 83, 185
MflI RGATCY 1 cut(s) 43
MluCI AATT 2 cut(s) 224, 296
MnlI CCTC 2 cut(s) 196, 276
MspA1I CMGCKG 2 cut(s) 137, 215
MspI CCGG 3 cut(s) 55, 88, 204
MvnI CGCG 1 cut(s) 250
MwoI GCNNNNNNNGC 3 cut(s) 84, 131, 258
NdeII GATC 2 cut(s) 43, 139
PauI GCGCGC 1 cut(s) 248
PfeI GAWTC 1 cut(s) 176
PkrI GCNGC 2 cut(s) 86, 136
Ppu21I YACGTR 1 cut(s) 238
PstI CTGCAG 1 cut(s) 263
PsuI RGATCY 1 cut(s) 43
PteI GCGCGC 1 cut(s) 248
PvuII CAGCTG 1 cut(s) 137
SatI GCNGC 2 cut(s) 85, 135
Sau3AI GATC 2 cut(s) 43, 139
SetI ASST 5 cut(s) 16, 107, 127, 139, 240
SfcI CTRYAG 1 cut(s) 259
Sse9I AATT 2 cut(s) 224, 296
SsiI CCGC 1 cut(s) 213
TaiI ACGT 1 cut(s) 240
TasI AATT 2 cut(s) 224, 296
TfiI GAWTC 1 cut(s) 176
TscAI CASTG 1 cut(s) 250
TseI GCWGC 2 cut(s) 84, 134
TspDTI ATGAA 2 cut(s) 54, 152
TspGWI ACGGA 1 cut(s) 234
TspRI CASTG 1 cut(s) 250
XagI CCTNNNNNAGG 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.