Rh1AG174400

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0009722
Physical Location & Seq
Forward (+)
33452733 .. 33453188
456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG174400.1

Sequence Viewer

Length: 456 bp
ATGAGATTTGAGTATATGGAAATAGTTGCAATGCTTAAACTTGTTTTGCTACTTCTCTTTTACATAGTAACAGAGATTGCCTGTAAAAGTGGTGCTCAGCTGATAGGTTGCCTAGAAATGGAAAGAGAAGGTCTTACTGACTTCAAGAATGGTCTCAAAGATCCTGAAAACCGGCTGTCTTCATTGGAAGGAAGCAACTGCTGCCGGTGGTGGGGGATAAGCTGTGATAATACAACTGGAGCTGTTATTTCAGCTGATCTCCATAACCCACATCCACTTCATCCATTTGAAGATTCTGCTTCCTCTGGCAGGTACGGATTTTGGAACCTACTGGTGAAATTAGACCTTCACTGGAACTGCTCAAGACTTGATGTTCAATACATTCAATGGCATTTCAATTCCCGATTGATTTGGATCCTTGAAGAATTTTCACTATCTGAATCTATCGAATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0010359 GO:0012505 GO:0014070 GO:0016020 GO:0016043 GO:0016045 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031410 GO:0031982 GO:0032409 GO:0032412 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0033036 GO:0033037 GO:0033554 GO:0033993 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0042221 GO:0042545 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043269 GO:0043401 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065009 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098542 GO:0098543 GO:0098581 GO:0098657 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1903959
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LCM LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

151

Amino Acids

17.43

Weight (kDa)

5.01

Isoelectric Point (pI)

42.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 40 - 76 1.4e-07 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 300
AclWI GGATC 3 cut(s) 155, 409, 422
AcsI RAATTY 1 cut(s) 425
AfaI GTAC 1 cut(s) 314
AfiI CCNNNNNNNGG 3 cut(s) 118, 211, 309
AgsI TTSAA 6 cut(s) 145, 290, 377, 386, 397, 422
AluBI AGCT 4 cut(s) 100, 222, 242, 254
AluI AGCT 4 cut(s) 100, 222, 242, 254
Alw21I GWGCWC 1 cut(s) 97
Alw26I GTCTC 1 cut(s) 158
AlwI GGATC 3 cut(s) 155, 409, 422
ApeKI GCWGC 1 cut(s) 201
ApoI RAATTY 1 cut(s) 425
AsuHPI GGTGA 1 cut(s) 346
BamHI GGATCC 1 cut(s) 414
BbsI GAAGAC 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 97
BbvI GCAGC 1 cut(s) 188
BcoDI GTCTC 1 cut(s) 158
BfaI CTAG 1 cut(s) 113
BfuAI ACCTGC 1 cut(s) 300
BisI GCNGC 1 cut(s) 202
BlpI GCTNAGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 203
BmiI GGNNCC 2 cut(s) 326, 416
BpiI GAAGAC 1 cut(s) 171
BpmI CTGGAG 1 cut(s) 258
Bpu1102I GCTNAGC 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 346
BsaBI GATNNNNATC 1 cut(s) 413
BsaI GGTCTC 1 cut(s) 158
Bsc4I CCNNNNNNNGG 3 cut(s) 118, 211, 309
Bse118I RCCGGY 2 cut(s) 171, 204
Bse1I ACTGG 3 cut(s) 241, 336, 356
Bse3DI GCAATG 1 cut(s) 36
Bse8I GATNNNNATC 1 cut(s) 413
BseGI GGATG 2 cut(s) 271, 280
BseJI GATNNNNATC 1 cut(s) 413
BseLI CCNNNNNNNGG 3 cut(s) 118, 211, 309
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 3 cut(s) 241, 336, 356
BseXI GCAGC 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 97
BsiSI CCGG 2 cut(s) 172, 205
BslI CCNNNNNNNGG 3 cut(s) 118, 211, 309
BsmAI GTCTC 1 cut(s) 158
BsmI GAATGC 1 cut(s) 455
Bso31I GGTCTC 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 97
Bsp143I GATC 3 cut(s) 160, 256, 414
Bsp1720I GCTNAGC 1 cut(s) 96
BspCNI CTCAG 1 cut(s) 109
BspLI GGNNCC 2 cut(s) 326, 416
BspMI ACCTGC 1 cut(s) 300
BspPI GGATC 3 cut(s) 155, 409, 422
BspTNI GGTCTC 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 36
BsrFI RCCGGY 2 cut(s) 171, 204
BsrI ACTGG 3 cut(s) 241, 336, 356
BssAI RCCGGY 2 cut(s) 171, 204
BssMI GATC 3 cut(s) 160, 256, 414
BstAPI GCANNNNNTGC 1 cut(s) 201
BstDEI CTNAG 1 cut(s) 96
BstENI CCTNNNNNAGG 1 cut(s) 307
BstF5I GGATG 2 cut(s) 271, 280
BstKTI GATC 3 cut(s) 163, 259, 417
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 3 cut(s) 160, 256, 414
BstMWI GCNNNNNNNGC 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 188
BstV2I GAAGAC 1 cut(s) 171
BstX2I RGATCY 2 cut(s) 160, 414
BstYI RGATCY 2 cut(s) 160, 414
BtsCI GGATG 2 cut(s) 271, 280
BtsIMutI CAGTG 1 cut(s) 349
BveI ACCTGC 1 cut(s) 300
Cfr10I RCCGGY 2 cut(s) 171, 204
Csp6I GTAC 1 cut(s) 313
CviJI RGCY 5 cut(s) 100, 175, 222, 242, 254
CviKI_1 RGCY 5 cut(s) 100, 175, 222, 242, 254
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 1 cut(s) 96
DpnI GATC 3 cut(s) 162, 258, 416
DpnII GATC 3 cut(s) 160, 256, 414
Eco31I GGTCTC 1 cut(s) 158
EcoNI CCTNNNNNAGG 1 cut(s) 307
FaiI YATR 4 cut(s) 15, 17, 65, 264
Fnu4HI GCNGC 1 cut(s) 202
FokI GGATG 2 cut(s) 258, 267
Fsp4HI GCNGC 1 cut(s) 202
FspBI CTAG 1 cut(s) 113
GluI GCNGC 1 cut(s) 202
GsuI CTGGAG 1 cut(s) 258
HapII CCGG 2 cut(s) 172, 205
HinfI GANTC 2 cut(s) 293, 440
HpaII CCGG 2 cut(s) 172, 205
HphI GGTGA 1 cut(s) 346
Hpy188I TCNGA 1 cut(s) 439
Hpy188III TCNNGA 4 cut(s) 145, 164, 363, 402
HpyAV CCTTC 3 cut(s) 122, 182, 356
HpyCH4V TGCA 1 cut(s) 29
HpyF10VI GCNNNNNNNGC 1 cut(s) 201
HpyF3I CTNAG 1 cut(s) 96
Kzo9I GATC 3 cut(s) 160, 256, 414
LmnI GCTCC 1 cut(s) 239
LpnPI CCDG 9 cut(s) 94, 177, 185, 218, 222, 291, 295, 317, 337
Lsp1109I GCAGC 1 cut(s) 188
MaeI CTAG 1 cut(s) 113
MaeIII GTNAC 1 cut(s) 67
MalI GATC 3 cut(s) 162, 258, 416
MboI GATC 3 cut(s) 160, 256, 414
MboII GAAGA 3 cut(s) 171, 302, 434
MflI RGATCY 2 cut(s) 160, 414
MhlI GDGCHC 1 cut(s) 97
MluCI AATT 3 cut(s) 338, 397, 425
MnlI CCTC 1 cut(s) 313
MseI TTAA 1 cut(s) 36
MspA1I CMGCKG 2 cut(s) 100, 254
MspI CCGG 2 cut(s) 172, 205
Mva1269I GAATGC 1 cut(s) 455
MwoI GCNNNNNNNGC 1 cut(s) 201
NdeII GATC 3 cut(s) 160, 256, 414
NlaIV GGNNCC 2 cut(s) 326, 416
PctI GAATGC 1 cut(s) 455
PfeI GAWTC 2 cut(s) 293, 440
PkrI GCNGC 1 cut(s) 203
PspN4I GGNNCC 2 cut(s) 326, 416
PsuI RGATCY 2 cut(s) 160, 414
PvuII CAGCTG 2 cut(s) 100, 254
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 1 cut(s) 202
Sau3AI GATC 3 cut(s) 160, 256, 414
SduI GDGCHC 1 cut(s) 97
SetI ASST 9 cut(s) 102, 109, 133, 224, 244, 256, 314, 330, 348
SmlI CTYRAG 1 cut(s) 361
SmoI CTYRAG 1 cut(s) 361
Sse9I AATT 3 cut(s) 338, 397, 425
SspMI CTAG 1 cut(s) 113
TaqI TCGA 1 cut(s) 447
TasI AATT 3 cut(s) 338, 397, 425
TfiI GAWTC 2 cut(s) 293, 440
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 1 cut(s) 356
TseI GCWGC 1 cut(s) 201
TspDTI ATGAA 2 cut(s) 171, 269
TspGWI ACGGA 1 cut(s) 330
TspRI CASTG 1 cut(s) 356
XagI CCTNNNNNAGG 1 cut(s) 307
XapI RAATTY 1 cut(s) 425
XspI CTAG 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.