Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0009722

Physical Location & Seq

Genomic Coordinates Forward (+)

35952307 .. 35952690

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG162300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGAGTTGACCCTTCAACAGAAGATTCAAACTGGATTGAGAGGCTCAATAAACTATCATCCTTCAATGAATTGCATCTATCTGATAGTCAGTTATCTGGTTTTATTCCATCTTTCACTACGATCAATTTTACTACTTGCTGTAATAGAGCTTGATTGTAACAGCTTCCATTCAGAAATACATAATTGGCTTGTCAACACCAGCAATGTTGTTACAGTCAGTATTAGCCAGTGTGGTTTGTATAAAAGAATTTTACTTGGTTTTGGAGAACTACCAGGTTTGAAGTTCTTAGTTCTTTCTCAGAATGATAGCCTCACAGGAAGTTGCTCTCAACTTTTCGGACAGAGATGGCCAAAGTTAGAAGTCGACATTGATCGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0010359 GO:0012505 GO:0014070 GO:0016020 GO:0016043 GO:0016045 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031410 GO:0031982 GO:0032409 GO:0032412 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0033036 GO:0033037 GO:0033554 GO:0033993 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0042221 GO:0042545 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043269 GO:0043401 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065009 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098542 GO:0098543 GO:0098581 GO:0098657 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LCM LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

127

Amino Acids

14.34

Weight (kDa)

6.88

Isoelectric Point (pI)

43.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009722)

Species	Orthologous Gene IDs
malus_domestica	MD02G1302600.v1.1 MD02G1302700.v1.1
prunus_persica	Prupe.2G021700_v2.0.a1
rosa_laevigata	RLG00000029060 RLG00000029062
rosa_multiflora	Rmu_sc0001211.1_g000069 Rmu_sc0001211.1_g000077
rosa_roxburghii	Rroxscaffold_4G00311700
rosa_rugosa	Rorug01G0160200.1 Rorug01G0160300.1
rosa_samantha	Rh1AG174400 Rh1AG174500 Rh1AG174900 Rh1BG142700 Rh1BG143100 Rh1CG162200 Rh1CG162300 Rh1CG162800 Rh1DG174300 Rh1DG174500 Rh1DG174600
rosa_wichuraiana	Rw1G014720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	366
AcoI	YGGCCR	1 cut(s)	350
AcsI	RAATTY	1 cut(s)	249
AgsI	TTSAA	4 cut(s)	17, 29, 66, 283
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	3 cut(s)	151, 165, 380
AluI	AGCT	3 cut(s)	151, 165, 380
AoxI	GGCC	1 cut(s)	350
ApoI	RAATTY	1 cut(s)	249
BalI	TGGCCA	1 cut(s)	352
BccI	CCATC	2 cut(s)	117, 342
BciT130I	CCWGG	1 cut(s)	276
Bme1390I	CCNGG	1 cut(s)	276
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	1 cut(s)	84
Bse1I	ACTGG	2 cut(s)	37, 229
Bse3DI	GCAATG	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	276
BseGI	GGATG	1 cut(s)	58
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	2 cut(s)	37, 229
BshFI	GGCC	1 cut(s)	352
BsnI	GGCC	1 cut(s)	352
Bsp143I	GATC	2 cut(s)	122, 373
BspANI	GGCC	1 cut(s)	352
BspCNI	CTCAG	1 cut(s)	313
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	2 cut(s)	37, 229
BssMI	GATC	2 cut(s)	122, 373
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	1 cut(s)	217
BstDEI	CTNAG	2 cut(s)	289, 300
BstF5I	GGATG	1 cut(s)	58
BstKTI	GATC	2 cut(s)	125, 376
BstMBI	GATC	2 cut(s)	122, 373
BstNI	CCWGG	1 cut(s)	276
BstSCI	CCNGG	1 cut(s)	274
BsuRI	GGCC	1 cut(s)	352
BtsCI	GGATG	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	236
CsiI	ACCWGGT	1 cut(s)	274
CviJI	RGCY	8 cut(s)	45, 151, 165, 190, 228, 312, 352, 380
CviKI_1	RGCY	8 cut(s)	45, 151, 165, 190, 228, 312, 352, 380
DdeI	CTNAG	2 cut(s)	289, 300
DpnI	GATC	2 cut(s)	124, 375
DpnII	GATC	2 cut(s)	122, 373
EaeI	YGGCCR	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	274
FaiI	YATR	2 cut(s)	183, 243
FblI	GTMKAC	1 cut(s)	366
FokI	GGATG	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	352
HincII	GTYRAC	3 cut(s)	9, 196, 367
HindII	GTYRAC	3 cut(s)	9, 196, 367
HinfI	GANTC	1 cut(s)	25
Hpy166II	GTNNAC	3 cut(s)	9, 196, 367
Hpy188I	TCNGA	4 cut(s)	84, 175, 303, 341
Hpy8I	GTNNAC	3 cut(s)	9, 196, 367
HpyAV	CCTTC	2 cut(s)	23, 72
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4V	TGCA	1 cut(s)	75
HpyF3I	CTNAG	2 cut(s)	289, 300
Kzo9I	GATC	2 cut(s)	122, 373
LpnPI	CCDG	7 cut(s)	18, 83, 214, 242, 261, 288, 303
LweI	GCATC	1 cut(s)	84
MabI	ACCWGGT	1 cut(s)	274
MaeIII	GTNAC	2 cut(s)	158, 211
MalI	GATC	2 cut(s)	124, 375
MboI	GATC	2 cut(s)	122, 373
MboII	GAAGA	1 cut(s)	34
MlsI	TGGCCA	1 cut(s)	352
MluCI	AATT	4 cut(s)	70, 126, 184, 249
MluNI	TGGCCA	1 cut(s)	352
MnlI	CCTC	2 cut(s)	35, 323
Mox20I	TGGCCA	1 cut(s)	352
MscI	TGGCCA	1 cut(s)	352
Msp20I	TGGCCA	1 cut(s)	352
MspR9I	CCNGG	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	276
NdeII	GATC	2 cut(s)	122, 373
PfeI	GAWTC	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	274
SalI	GTCGAC	1 cut(s)	365
Sau3AI	GATC	2 cut(s)	122, 373
ScrFI	CCNGG	1 cut(s)	276
SetI	ASST	4 cut(s)	153, 167, 280, 382
SexAI	ACCWGGT	1 cut(s)	274
SfaNI	GCATC	1 cut(s)	84
Sse9I	AATT	4 cut(s)	70, 126, 184, 249
StyD4I	CCNGG	1 cut(s)	274
TaaI	ACNGT	1 cut(s)	217
TaqI	TCGA	2 cut(s)	366, 376
TasI	AATT	4 cut(s)	70, 126, 184, 249
TfiI	GAWTC	1 cut(s)	25
TscAI	CASTG	1 cut(s)	236
TspDTI	ATGAA	1 cut(s)	83
TspRI	CASTG	1 cut(s)	236
XapI	RAATTY	1 cut(s)	249
XmiI	GTMKAC	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.