Rh1DG174300

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0009722
Physical Location & Seq
Forward (+)
35864872 .. 35865642
771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG174300.1

Sequence Viewer

Length: 450 bp
ATGAGATTTATGGAAATAGTTACAATGCTTAAACTTGTTTTGCTACTTCTCTTTTACATATTAACAGGGATTGCCTGTAGAAGTGGTGCTCAGCTGATAGGTTGCCTAGAAATGGAAAGAGAAGGTCTTACTGACTTCAGGAATGGTCTCGAAGATCCTGAAAACCGGCTGTCTTCATTGGAAGGAAGCAACTGCTGCCGGTGGTGGGGGATAAGCTGTGATAATACAACTGGAGCTGTTATTGCAGCTGATCTCCATAACCCACATCCACTTCTTCCATTTGAAGATTCTGCTTCCTCTGGCAGGTACGGATTTTGGAACTTACTGGTGAAATTAGACCTTCACTGGAACTGCTCAAGACTTGAGGTTCAATACATTCAATGGCATTTCAATTCCCGATTAATTTGGATCCTTGAAGAATTTTCACTATCTGAATCTATCGAATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0010359 GO:0012505 GO:0014070 GO:0016020 GO:0016043 GO:0016045 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031410 GO:0031982 GO:0032409 GO:0032412 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0033036 GO:0033037 GO:0033554 GO:0033993 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0042221 GO:0042545 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043269 GO:0043401 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065009 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098542 GO:0098543 GO:0098581 GO:0098657 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1903959
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LCM LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

149

Amino Acids

17.14

Weight (kDa)

4.88

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 38 - 74 6.2e-07 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 294
AclWI GGATC 3 cut(s) 149, 403, 416
AcsI RAATTY 1 cut(s) 419
AcuI CTGAAG 1 cut(s) 121
AfaI GTAC 1 cut(s) 308
AfiI CCNNNNNNNGG 3 cut(s) 112, 205, 303
AgsI TTSAA 5 cut(s) 284, 371, 380, 391, 416
AluBI AGCT 4 cut(s) 94, 216, 236, 248
AluI AGCT 4 cut(s) 94, 216, 236, 248
Alw21I GWGCWC 1 cut(s) 91
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 3 cut(s) 149, 403, 416
ApeKI GCWGC 2 cut(s) 195, 245
ApoI RAATTY 1 cut(s) 419
AseI ATTAAT 1 cut(s) 401
AsuHPI GGTGA 1 cut(s) 340
BamHI GGATCC 1 cut(s) 408
BbsI GAAGAC 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 91
BbvI GCAGC 2 cut(s) 182, 257
BcoDI GTCTC 1 cut(s) 152
BfaI CTAG 1 cut(s) 107
BfmI CTRYAG 1 cut(s) 76
BfuAI ACCTGC 1 cut(s) 294
BisI GCNGC 2 cut(s) 196, 246
BlpI GCTNAGC 1 cut(s) 90
BlsI GCNGC 2 cut(s) 197, 247
BmiI GGNNCC 1 cut(s) 410
BpiI GAAGAC 1 cut(s) 165
BpmI CTGGAG 1 cut(s) 252
Bpu1102I GCTNAGC 1 cut(s) 90
BpuEI CTTGAG 2 cut(s) 340, 383
BsaI GGTCTC 1 cut(s) 152
Bsc4I CCNNNNNNNGG 3 cut(s) 112, 205, 303
Bse118I RCCGGY 2 cut(s) 165, 198
Bse1I ACTGG 3 cut(s) 235, 330, 350
BseGI GGATG 1 cut(s) 265
BseLI CCNNNNNNNGG 3 cut(s) 112, 205, 303
BseMII CTCAG 1 cut(s) 104
BseNI ACTGG 3 cut(s) 235, 330, 350
BseXI GCAGC 2 cut(s) 182, 257
BsiHKAI GWGCWC 1 cut(s) 91
BsiSI CCGG 2 cut(s) 166, 199
BslI CCNNNNNNNGG 3 cut(s) 112, 205, 303
BsmAI GTCTC 1 cut(s) 152
BsmI GAATGC 1 cut(s) 449
Bso31I GGTCTC 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 3 cut(s) 154, 250, 408
Bsp1720I GCTNAGC 1 cut(s) 90
BspCNI CTCAG 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 410
BspMI ACCTGC 1 cut(s) 294
BspPI GGATC 3 cut(s) 149, 403, 416
BspTNI GGTCTC 1 cut(s) 152
BsrFI RCCGGY 2 cut(s) 165, 198
BsrI ACTGG 3 cut(s) 235, 330, 350
BssAI RCCGGY 2 cut(s) 165, 198
BssMI GATC 3 cut(s) 154, 250, 408
BstAPI GCANNNNNTGC 1 cut(s) 195
BstDEI CTNAG 1 cut(s) 90
BstENI CCTNNNNNAGG 1 cut(s) 301
BstF5I GGATG 1 cut(s) 265
BstKTI GATC 3 cut(s) 157, 253, 411
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 3 cut(s) 154, 250, 408
BstMWI GCNNNNNNNGC 2 cut(s) 195, 242
BstSFI CTRYAG 1 cut(s) 76
BstV1I GCAGC 2 cut(s) 182, 257
BstV2I GAAGAC 1 cut(s) 165
BstX2I RGATCY 2 cut(s) 154, 408
BstYI RGATCY 2 cut(s) 154, 408
BtsCI GGATG 1 cut(s) 265
BtsIMutI CAGTG 1 cut(s) 343
BveI ACCTGC 1 cut(s) 294
Cfr10I RCCGGY 2 cut(s) 165, 198
Csp6I GTAC 1 cut(s) 307
CviJI RGCY 5 cut(s) 94, 169, 216, 236, 248
CviKI_1 RGCY 5 cut(s) 94, 169, 216, 236, 248
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 1 cut(s) 90
DpnI GATC 3 cut(s) 156, 252, 410
DpnII GATC 3 cut(s) 154, 250, 408
Eco31I GGTCTC 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 121
EcoNI CCTNNNNNAGG 1 cut(s) 301
FaiI YATR 3 cut(s) 11, 59, 258
Fnu4HI GCNGC 2 cut(s) 196, 246
FokI GGATG 1 cut(s) 252
Fsp4HI GCNGC 2 cut(s) 196, 246
FspBI CTAG 1 cut(s) 107
GluI GCNGC 2 cut(s) 196, 246
GsuI CTGGAG 1 cut(s) 252
HapII CCGG 2 cut(s) 166, 199
HinfI GANTC 2 cut(s) 287, 434
HpaII CCGG 2 cut(s) 166, 199
HphI GGTGA 1 cut(s) 340
Hpy188I TCNGA 1 cut(s) 433
Hpy188III TCNNGA 5 cut(s) 139, 149, 158, 357, 396
HpyAV CCTTC 3 cut(s) 116, 176, 350
HpyCH4V TGCA 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 2 cut(s) 195, 242
HpyF3I CTNAG 1 cut(s) 90
Kzo9I GATC 3 cut(s) 154, 250, 408
LmnI GCTCC 1 cut(s) 233
Lsp1109I GCAGC 2 cut(s) 182, 257
MaeI CTAG 1 cut(s) 107
MaeIII GTNAC 1 cut(s) 19
MalI GATC 3 cut(s) 156, 252, 410
MboI GATC 3 cut(s) 154, 250, 408
MboII GAAGA 5 cut(s) 164, 165, 266, 296, 428
MflI RGATCY 2 cut(s) 154, 408
MhlI GDGCHC 1 cut(s) 91
MluCI AATT 4 cut(s) 332, 391, 402, 419
MnlI CCTC 2 cut(s) 307, 358
MseI TTAA 3 cut(s) 30, 62, 401
MspA1I CMGCKG 2 cut(s) 94, 248
MspI CCGG 2 cut(s) 166, 199
Mva1269I GAATGC 1 cut(s) 449
MwoI GCNNNNNNNGC 2 cut(s) 195, 242
NdeII GATC 3 cut(s) 154, 250, 408
NlaIV GGNNCC 1 cut(s) 410
PctI GAATGC 1 cut(s) 449
PfeI GAWTC 2 cut(s) 287, 434
PkrI GCNGC 2 cut(s) 197, 247
PshBI ATTAAT 1 cut(s) 401
PspN4I GGNNCC 1 cut(s) 410
PsuI RGATCY 2 cut(s) 154, 408
PvuII CAGCTG 2 cut(s) 94, 248
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
SaqAI TTAA 3 cut(s) 30, 62, 401
SatI GCNGC 2 cut(s) 196, 246
Sau3AI GATC 3 cut(s) 154, 250, 408
SduI GDGCHC 1 cut(s) 91
SetI ASST 9 cut(s) 96, 103, 127, 218, 238, 250, 308, 342, 369
SfcI CTRYAG 1 cut(s) 76
SmlI CTYRAG 2 cut(s) 355, 362
SmoI CTYRAG 2 cut(s) 355, 362
Sse9I AATT 4 cut(s) 332, 391, 402, 419
SspMI CTAG 1 cut(s) 107
TaqI TCGA 2 cut(s) 150, 441
TasI AATT 4 cut(s) 332, 391, 402, 419
TfiI GAWTC 2 cut(s) 287, 434
Tru1I TTAA 3 cut(s) 30, 62, 401
Tru9I TTAA 3 cut(s) 30, 62, 401
TscAI CASTG 1 cut(s) 350
TseI GCWGC 2 cut(s) 195, 245
TspDTI ATGAA 1 cut(s) 165
TspGWI ACGGA 1 cut(s) 324
TspRI CASTG 1 cut(s) 350
VspI ATTAAT 1 cut(s) 401
XagI CCTNNNNNAGG 1 cut(s) 301
XapI RAATTY 1 cut(s) 419
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.