Rmu_sc0001211.1_g000069

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001211.1
OG0009722
Physical Location & Seq
Forward (+)
270432 .. 271581
1150 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001211.1_g000069.1.cds

Sequence Viewer

Length: 420 bp
atggaaagggaaggtcttactgacttcaagaatggtctcaaagatcctgaaaaccggctgtcttcattggaaggaagcaactgctgccggtggtgggggataagctgtgataatacaactggagctgttatttcagctgatctccataacccacatccacttcatccatttgaagattctgcttcctctggcaggaactttaccggaagttccgctgacagagaattgcacttctacgagtccactgagcgcctaaactgcagtccttgcagttcgcaaatcgcaaccaatcagttggttggcaaattgcgacaatggttaagtcagcttgacaatcttggtaaactaaatctgtccggtaactcgtttatcgtcccatccccacctcatcaggatcattatcaaatatatacgagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0010359 GO:0012505 GO:0014070 GO:0016020 GO:0016043 GO:0016045 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031410 GO:0031982 GO:0032409 GO:0032412 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0033036 GO:0033037 GO:0033554 GO:0033993 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0042221 GO:0042545 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043269 GO:0043401 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065009 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098542 GO:0098543 GO:0098581 GO:0098657 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1903959
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LCM LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

139

Amino Acids

15.48

Weight (kDa)

5.59

Isoelectric Point (pI)

38.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 213
AclWI GGATC 2 cut(s) 38, 402
AfiI CCNNNNNNNGG 2 cut(s) 94, 192
AgsI TTSAA 2 cut(s) 28, 173
AluBI AGCT 5 cut(s) 105, 125, 137, 328, 417
AluI AGCT 5 cut(s) 105, 125, 137, 328, 417
Alw26I GTCTC 1 cut(s) 41
AlwI GGATC 2 cut(s) 38, 402
ApeKI GCWGC 1 cut(s) 84
AspLEI GCGC 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 54
BbvI GCAGC 1 cut(s) 71
BccI CCATC 1 cut(s) 385
BcoDI GTCTC 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 259
BfoI RGCGCY 1 cut(s) 253
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
BpiI GAAGAC 1 cut(s) 54
BpmI CTGGAG 1 cut(s) 141
BsaBI GATNNNNATC 1 cut(s) 399
BsaI GGTCTC 1 cut(s) 41
BsaWI WCCGGW 2 cut(s) 203, 356
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 192
Bse118I RCCGGY 2 cut(s) 54, 87
Bse1I ACTGG 1 cut(s) 124
Bse8I GATNNNNATC 1 cut(s) 399
BseGI GGATG 3 cut(s) 154, 163, 377
BseJI GATNNNNATC 1 cut(s) 399
BseLI CCNNNNNNNGG 2 cut(s) 94, 192
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 1 cut(s) 124
BseXI GCAGC 1 cut(s) 71
BsiSI CCGG 4 cut(s) 55, 88, 204, 357
BslFI GGGAC 1 cut(s) 359
BslI CCNNNNNNNGG 2 cut(s) 94, 192
BsmAI GTCTC 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 359
Bso31I GGTCTC 1 cut(s) 41
Bsp143I GATC 3 cut(s) 43, 139, 394
BspACI CCGC 1 cut(s) 213
BspCNI CTCAG 1 cut(s) 238
BspMAI CTGCAG 1 cut(s) 263
BspPI GGATC 2 cut(s) 38, 402
BspTNI GGTCTC 1 cut(s) 41
BsrFI RCCGGY 2 cut(s) 54, 87
BsrI ACTGG 1 cut(s) 124
BssAI RCCGGY 2 cut(s) 54, 87
BssMI GATC 3 cut(s) 43, 139, 394
BstAPI GCANNNNNTGC 2 cut(s) 84, 267
BstDEI CTNAG 1 cut(s) 246
BstENI CCTNNNNNAGG 1 cut(s) 190
BstF5I GGATG 3 cut(s) 154, 163, 377
BstH2I RGCGCY 1 cut(s) 253
BstHHI GCGC 1 cut(s) 252
BstKTI GATC 3 cut(s) 46, 142, 397
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 3 cut(s) 43, 139, 394
BstMWI GCNNNNNNNGC 3 cut(s) 84, 258, 267
BstSFI CTRYAG 1 cut(s) 259
BstV1I GCAGC 1 cut(s) 71
BstV2I GAAGAC 1 cut(s) 54
BstX2I RGATCY 1 cut(s) 43
BstXI CCANNNNNNTGG 1 cut(s) 295
BstYI RGATCY 1 cut(s) 43
BtsCI GGATG 3 cut(s) 154, 163, 377
BtsIMutI CAGTG 1 cut(s) 243
CfoI GCGC 1 cut(s) 252
Cfr10I RCCGGY 2 cut(s) 54, 87
CviJI RGCY 6 cut(s) 58, 105, 125, 137, 328, 417
CviKI_1 RGCY 6 cut(s) 58, 105, 125, 137, 328, 417
DdeI CTNAG 1 cut(s) 246
DpnI GATC 3 cut(s) 45, 141, 396
DpnII GATC 3 cut(s) 43, 139, 394
Eco31I GGTCTC 1 cut(s) 41
EcoNI CCTNNNNNAGG 1 cut(s) 190
FaiI YATR 3 cut(s) 147, 409, 411
FaqI GGGAC 1 cut(s) 359
Fnu4HI GCNGC 1 cut(s) 85
FokI GGATG 3 cut(s) 141, 150, 364
Fsp4HI GCNGC 1 cut(s) 85
GlaI GCGC 1 cut(s) 251
GluI GCNGC 1 cut(s) 85
GsuI CTGGAG 1 cut(s) 141
HaeII RGCGCY 1 cut(s) 253
HapII CCGG 4 cut(s) 55, 88, 204, 357
HhaI GCGC 1 cut(s) 252
Hin6I GCGC 1 cut(s) 250
HinP1I GCGC 1 cut(s) 250
HinfI GANTC 2 cut(s) 176, 239
HpaII CCGG 4 cut(s) 55, 88, 204, 357
Hpy166II GTNNAC 2 cut(s) 243, 344
Hpy188III TCNNGA 3 cut(s) 28, 47, 392
Hpy8I GTNNAC 2 cut(s) 243, 344
HpyAV CCTTC 2 cut(s) 5, 65
HpyCH4V TGCA 3 cut(s) 229, 261, 270
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 258, 267
HpyF3I CTNAG 1 cut(s) 246
HspAI GCGC 1 cut(s) 250
Kzo9I GATC 3 cut(s) 43, 139, 394
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 9 cut(s) 60, 68, 101, 105, 174, 178, 217, 370, 377
Lsp1109I GCAGC 1 cut(s) 71
MaeIII GTNAC 1 cut(s) 359
MalI GATC 3 cut(s) 45, 141, 396
MboI GATC 3 cut(s) 43, 139, 394
MboII GAAGA 2 cut(s) 54, 185
MflI RGATCY 1 cut(s) 43
MluCI AATT 2 cut(s) 224, 305
MlyI GAGTC 1 cut(s) 248
MnlI CCTC 2 cut(s) 196, 396
MseI TTAA 1 cut(s) 320
MspA1I CMGCKG 2 cut(s) 137, 215
MspI CCGG 4 cut(s) 55, 88, 204, 357
MwoI GCNNNNNNNGC 3 cut(s) 84, 258, 267
NdeII GATC 3 cut(s) 43, 139, 394
PfeI GAWTC 1 cut(s) 176
PkrI GCNGC 1 cut(s) 86
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PstI CTGCAG 1 cut(s) 263
PsuI RGATCY 1 cut(s) 43
PvuII CAGCTG 1 cut(s) 137
SaqAI TTAA 1 cut(s) 320
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 3 cut(s) 43, 139, 394
SchI GAGTC 1 cut(s) 248
SetI ASST 7 cut(s) 16, 107, 127, 139, 330, 388, 419
SfcI CTRYAG 1 cut(s) 259
Sse9I AATT 2 cut(s) 224, 305
SsiI CCGC 1 cut(s) 213
TasI AATT 2 cut(s) 224, 305
TfiI GAWTC 1 cut(s) 176
Tru1I TTAA 1 cut(s) 320
Tru9I TTAA 1 cut(s) 320
TscAI CASTG 1 cut(s) 250
TseI GCWGC 1 cut(s) 84
TspDTI ATGAA 2 cut(s) 54, 152
TspRI CASTG 1 cut(s) 250
XagI CCTNNNNNAGG 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.