Rh1DG174600

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0009722
Physical Location & Seq
Forward (+)
35903102 .. 35903782
681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG174600.1

Sequence Viewer

Length: 681 bp
ATGTCCCAAGTGCAAAACATAAAAAGTTATCGATTCTATGGGATGTACAGGGGAATTTATTATGAAGAAAGCTTGGTTCTTAACTGGAAAGGCTCGCCTCAAAAATTTAACAAGTCCCTCTCCCTTGTAAACAGCATAGACCTTTCAGGAAATCAACTGAGTGGAGATCTTCCAGAAGAGATAACTGAACTTTCAGGTTTGGTTGTCCTGAATATATCCAGAAACCATATACGTGGTCACATTCCAGTAAGCATTTCCAAGTTGCAACAGTTGCAATCACTTGATCTTTCTAATAATAGGCTCTCAGGTCCAGTTCCTCAAAGTCTGTCTTCACTATCATTTCTGGGGTATCTGAATATGTCGAACAATGACTTCTCCGGCATGATCCCTTACACAGGTCATACGACAACTTTCGAAGCATCTTCTTTTGCTGGAAATCCAGGTCTTTGTGGTGCTCCTCTCGCTGTAAGGTGTCCAAGTACTGCTCCAGAAAAGACTCCGGGTGGTGATGATGATGATGACAACTTTATTGACAAATGGTTTTATTTGAGTGTTGGATTGGGATTTGCAGCAGGTATTTTGGTGCCATTCTTCATTTTAGCAACGAAAAAGTCCTGGAGTTATGCTTATTTCTGTTTCATAGATGAAGTTTTGGAGAGGATATCATGCTTGAAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0010359 GO:0012505 GO:0014070 GO:0016020 GO:0016043 GO:0016045 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031410 GO:0031982 GO:0032409 GO:0032412 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0033036 GO:0033037 GO:0033554 GO:0033993 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0042221 GO:0042545 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043269 GO:0043401 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065009 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098542 GO:0098543 GO:0098581 GO:0098657 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1903959
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LCM LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

226

Amino Acids

24.96

Weight (kDa)

5.59

Isoelectric Point (pI)

52.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 55 - 121 1.9e-07 Leucine-rich repeat region
LRR_8 PF13855 67 - 125 4.9e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 563
AccB1I GGYRCC 1 cut(s) 583
AclWI GGATC 1 cut(s) 379
AcsI RAATTY 2 cut(s) 54, 104
AfaI GTAC 2 cut(s) 47, 481
AfiI CCNNNNNNNGG 1 cut(s) 395
AgsI TTSAA 1 cut(s) 673
AjnI CCWGG 2 cut(s) 439, 614
AluBI AGCT 1 cut(s) 72
AluI AGCT 1 cut(s) 72
Alw21I GWGCWC 1 cut(s) 457
AlwI GGATC 1 cut(s) 379
ApeKI GCWGC 1 cut(s) 569
ApoI RAATTY 2 cut(s) 54, 104
AspS9I GGNCC 1 cut(s) 308
AsuC2I CCSGG 1 cut(s) 501
AsuHPI GGTGA 1 cut(s) 518
AsuII TTCGAA 1 cut(s) 414
AvaII GGWCC 1 cut(s) 308
BanI GGYRCC 1 cut(s) 583
BbsI GAAGAC 1 cut(s) 321
Bbv12I GWGCWC 1 cut(s) 457
BbvI GCAGC 1 cut(s) 581
BciT130I CCWGG 2 cut(s) 441, 616
BcnI CCSGG 1 cut(s) 501
BfuAI ACCTGC 1 cut(s) 563
BglII AGATCT 1 cut(s) 166
BisI GCNGC 1 cut(s) 570
BlsI GCNGC 1 cut(s) 571
BmcAI AGTACT 1 cut(s) 481
Bme1390I CCNGG 3 cut(s) 441, 501, 616
Bme18I GGWCC 1 cut(s) 308
BmgT120I GGNCC 1 cut(s) 308
BmiI GGNNCC 1 cut(s) 585
BmrFI CCNGG 3 cut(s) 441, 501, 616
BmsI GCATC 1 cut(s) 428
BpiI GAAGAC 1 cut(s) 321
BpmI CTGGAG 2 cut(s) 471, 637
Bpu14I TTCGAA 1 cut(s) 414
BpuMI CCSGG 1 cut(s) 501
Bsa29I ATCGAT 1 cut(s) 31
BsaAI YACGTR 1 cut(s) 233
Bsc4I CCNNNNNNNGG 1 cut(s) 395
Bse1I ACTGG 3 cut(s) 89, 245, 311
BseBI CCWGG 2 cut(s) 441, 616
BseCI ATCGAT 1 cut(s) 31
BseGI GGATG 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 395
BseMII CTCAG 2 cut(s) 149, 318
BseNI ACTGG 3 cut(s) 89, 245, 311
BseRI GAGGAG 1 cut(s) 447
BseXI GCAGC 1 cut(s) 581
BshNI GGYRCC 1 cut(s) 583
BshVI ATCGAT 1 cut(s) 31
BsiHKAI GWGCWC 1 cut(s) 457
BsiSI CCGG 2 cut(s) 378, 500
BslFI GGGAC 1 cut(s) 100
BslI CCNNNNNNNGG 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 100
Bsp119I TTCGAA 1 cut(s) 414
Bsp1286I GDGCHC 1 cut(s) 457
Bsp1407I TGTACA 1 cut(s) 45
Bsp143I GATC 3 cut(s) 166, 283, 384
BspCNI CTCAG 2 cut(s) 150, 317
BspDI ATCGAT 1 cut(s) 31
BspLI GGNNCC 1 cut(s) 585
BspMI ACCTGC 1 cut(s) 563
BspPI GGATC 1 cut(s) 379
BspT104I TTCGAA 1 cut(s) 414
BspT107I GGYRCC 1 cut(s) 583
BsrGI TGTACA 1 cut(s) 45
BsrI ACTGG 3 cut(s) 89, 245, 311
BssMI GATC 3 cut(s) 166, 283, 384
Bst2UI CCWGG 2 cut(s) 441, 616
Bst4CI ACNGT 1 cut(s) 270
Bst6I CTCTTC 1 cut(s) 171
BstAPI GCANNNNNTGC 1 cut(s) 271
BstAUI TGTACA 1 cut(s) 45
BstBAI YACGTR 1 cut(s) 233
BstBI TTCGAA 1 cut(s) 414
BstC8I GCNNGC 1 cut(s) 95
BstDEI CTNAG 2 cut(s) 158, 304
BstENI CCTNNNNNAGG 1 cut(s) 393
BstF5I GGATG 1 cut(s) 48
BstKTI GATC 3 cut(s) 169, 286, 387
BstMBI GATC 3 cut(s) 166, 283, 384
BstMWI GCNNNNNNNGC 2 cut(s) 271, 461
BstNI CCWGG 2 cut(s) 441, 616
BstSCI CCNGG 3 cut(s) 439, 499, 614
BstV1I GCAGC 1 cut(s) 581
BstV2I GAAGAC 1 cut(s) 321
BstX2I RGATCY 1 cut(s) 166
BstXI CCANNNNNNTGG 1 cut(s) 233
BstYI RGATCY 1 cut(s) 166
Bsu15I ATCGAT 1 cut(s) 31
BsuTUI ATCGAT 1 cut(s) 31
BtsCI GGATG 1 cut(s) 48
BveI ACCTGC 1 cut(s) 563
Cac8I GCNNGC 1 cut(s) 95
Cfr13I GGNCC 1 cut(s) 308
ClaI ATCGAT 1 cut(s) 31
Csp6I GTAC 2 cut(s) 46, 480
CviAII CATG 2 cut(s) 382, 666
CviJI RGCY 3 cut(s) 72, 93, 301
CviKI_1 RGCY 3 cut(s) 72, 93, 301
CviQI GTAC 2 cut(s) 46, 480
DdeI CTNAG 2 cut(s) 158, 304
DpnI GATC 3 cut(s) 168, 285, 386
DpnII GATC 3 cut(s) 166, 283, 384
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco32I GATATC 1 cut(s) 663
Eco47I GGWCC 1 cut(s) 308
EcoNI CCTNNNNNAGG 1 cut(s) 393
EcoRII CCWGG 2 cut(s) 439, 614
EcoRV GATATC 1 cut(s) 663
FaeI CATG 2 cut(s) 385, 669
FalI AAGNNNNNCTT 2 cut(s) 313, 345
FaqI GGGAC 1 cut(s) 100
FatI CATG 2 cut(s) 381, 665
Fnu4HI GCNGC 1 cut(s) 570
FokI GGATG 1 cut(s) 55
Fsp4HI GCNGC 1 cut(s) 570
GluI GCNGC 1 cut(s) 570
GsuI CTGGAG 2 cut(s) 471, 637
HapII CCGG 2 cut(s) 378, 500
Hin1II CATG 2 cut(s) 385, 669
HindIII AAGCTT 1 cut(s) 70
HinfI GANTC 2 cut(s) 33, 496
HpaII CCGG 2 cut(s) 378, 500
HphI GGTGA 1 cut(s) 518
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 1 cut(s) 354
Hpy188III TCNNGA 5 cut(s) 147, 173, 208, 219, 488
Hpy8I GTNNAC 1 cut(s) 130
HpyCH4III ACNGT 1 cut(s) 270
HpyCH4IV ACGT 1 cut(s) 232
HpyCH4V TGCA 4 cut(s) 13, 265, 274, 569
HpyF10VI GCNNNNNNNGC 2 cut(s) 271, 461
HpyF3I CTNAG 2 cut(s) 158, 304
HpySE526I ACGT 1 cut(s) 232
Hsp92II CATG 2 cut(s) 385, 669
Kzo9I GATC 3 cut(s) 166, 283, 384
LmnI GCTCC 2 cut(s) 460, 490
Lsp1109I GCAGC 1 cut(s) 581
LweI GCATC 1 cut(s) 428
MaeII ACGT 1 cut(s) 232
MaeIII GTNAC 1 cut(s) 236
MalI GATC 3 cut(s) 168, 285, 386
MboI GATC 3 cut(s) 166, 283, 384
MboII GAAGA 6 cut(s) 77, 161, 188, 321, 414, 583
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 457
MluCI AATT 3 cut(s) 54, 104, 676
MlyI GAGTC 1 cut(s) 490
MmeI TCCRAC 1 cut(s) 535
MnlI CCTC 5 cut(s) 108, 128, 327, 468, 651
MseI TTAA 2 cut(s) 81, 108
MslI CAYNNNNRTG 1 cut(s) 231
MspI CCGG 2 cut(s) 378, 500
MspR9I CCNGG 3 cut(s) 441, 501, 616
MvaI CCWGG 2 cut(s) 441, 616
MwoI GCNNNNNNNGC 2 cut(s) 271, 461
NciI CCSGG 1 cut(s) 501
NdeII GATC 3 cut(s) 166, 283, 384
NlaIII CATG 2 cut(s) 385, 669
NlaIV GGNNCC 1 cut(s) 585
NmuCI GTSAC 1 cut(s) 236
NspV TTCGAA 1 cut(s) 414
PfeI GAWTC 1 cut(s) 33
PfoI TCCNGGA 1 cut(s) 614
PkrI GCNGC 1 cut(s) 571
PleI GAGTC 1 cut(s) 490
PpsI GAGTC 1 cut(s) 490
Ppu21I YACGTR 1 cut(s) 233
Psp6I CCWGG 2 cut(s) 439, 614
PspGI CCWGG 2 cut(s) 439, 614
PspN4I GGNNCC 1 cut(s) 585
PspPI GGNCC 1 cut(s) 308
PsuI RGATCY 1 cut(s) 166
RsaI GTAC 2 cut(s) 47, 481
RsaNI GTAC 2 cut(s) 46, 480
RseI CAYNNNNRTG 1 cut(s) 231
SaqAI TTAA 2 cut(s) 81, 108
SatI GCNGC 1 cut(s) 570
Sau3AI GATC 3 cut(s) 166, 283, 384
Sau96I GGNCC 1 cut(s) 308
ScaI AGTACT 1 cut(s) 481
SchI GAGTC 1 cut(s) 490
ScrFI CCNGG 3 cut(s) 441, 501, 616
SduI GDGCHC 1 cut(s) 457
SetI ASST 9 cut(s) 74, 144, 199, 235, 310, 400, 445, 473, 577
SfaNI GCATC 1 cut(s) 428
SfuI TTCGAA 1 cut(s) 414
SinI GGWCC 1 cut(s) 308
SmiMI CAYNNNNRTG 1 cut(s) 231
Sse9I AATT 3 cut(s) 54, 104, 676
StyD4I CCNGG 3 cut(s) 439, 499, 614
TaaI ACNGT 1 cut(s) 270
TaiI ACGT 1 cut(s) 235
TaqI TCGA 3 cut(s) 31, 362, 414
TasI AATT 3 cut(s) 54, 104, 676
TatI WGTACW 2 cut(s) 45, 479
TfiI GAWTC 1 cut(s) 33
Tru1I TTAA 2 cut(s) 81, 108
Tru9I TTAA 2 cut(s) 81, 108
TseFI GTSAC 1 cut(s) 236
TseI GCWGC 1 cut(s) 569
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 4 cut(s) 78, 583, 628, 660
VpaK11BI GGWCC 1 cut(s) 308
XagI CCTNNNNNAGG 1 cut(s) 393
XapI RAATTY 2 cut(s) 54, 104
ZrmI AGTACT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.