RLG00000029583

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0015775
Physical Location & Seq
Reverse (-)
40734975 .. 40735295
321 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029583

Sequence Viewer

Length: 321 bp
ATGGCTCCTCCCAGTCCTCTCGGTCCTCCCGAGCTCCACAAACCCTCACCCACAACCACCGCTCCGCCGCCACCCCAACTCGAATCCAAACCCCAAGGTCTGGAACCGCGACGCCCTCACCACGCTCACTCCCATATGGTGGCATTTTGGCTCCACAAGCACCACCCCAAAACTCTTGCCTGCAACCTCGAGTCCTTCTCCGAGTTCTGCTACTTCAAGGACCTGCTGGAGATCGTGTACCGACTCCTGGAGGGTGATTCCGTGAGGAAGAAACAGAAGGCGGAGTGGCGGGAGAGGAAATGCGCCAGAGGCAGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

107

Amino Acids

12.25

Weight (kDa)

9.62

Isoelectric Point (pI)

61.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 44 - 98 7.9e-12 Domain of unknown function (DUF2828)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 231
AccB7I CCANNNNNTGG 2 cut(s) 100, 139
AccBSI CCGCTC 1 cut(s) 62
AccII CGCG 1 cut(s) 109
AciI CCGC 6 cut(s) 60, 65, 68, 107, 281, 289
AcyI GRCGYC 1 cut(s) 112
AfaI GTAC 1 cut(s) 239
AfiI CCNNNNNNNGG 4 cut(s) 100, 139, 247, 312
AgsI TTSAA 1 cut(s) 217
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 1 cut(s) 34
AluI AGCT 1 cut(s) 34
Alw21I GWGCWC 1 cut(s) 36
Ama87I CYCGRG 2 cut(s) 29, 188
AspLEI GCGC 1 cut(s) 305
AspS9I GGNCC 2 cut(s) 23, 220
AsuHPI GGTGA 3 cut(s) 39, 110, 266
AvaI CYCGRG 2 cut(s) 29, 188
AvaII GGWCC 2 cut(s) 23, 220
BanII GRGCYC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 248
BfuAI ACCTGC 1 cut(s) 231
BisI GCNGC 1 cut(s) 68
BlsI GCNGC 1 cut(s) 69
Bme1390I CCNGG 1 cut(s) 248
Bme18I GGWCC 2 cut(s) 23, 220
BmeT110I CYCGRG 2 cut(s) 29, 188
BmgT120I GGNCC 2 cut(s) 23, 220
BmiI GGNNCC 3 cut(s) 6, 105, 152
BmrFI CCNGG 1 cut(s) 248
BmrI ACTGGG 1 cut(s) 6
BmuI ACTGGG 1 cut(s) 6
BplI GAGNNNNNCTC 2 cut(s) 182, 214
BpmI CTGGAG 2 cut(s) 248, 269
BsaHI GRCGYC 1 cut(s) 112
BsaJI CCNNGG 1 cut(s) 94
BsaXI ACNNNNNCTCC 6 cut(s) 46, 76, 113, 143, 221, 251
Bsc4I CCNNNNNNNGG 4 cut(s) 100, 139, 247, 312
Bse1I ACTGG 1 cut(s) 12
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 94
BseLI CCNNNNNNNGG 4 cut(s) 100, 139, 247, 312
BseNI ACTGG 1 cut(s) 12
Bsh1236I CGCG 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 36
BsiHKCI CYCGRG 2 cut(s) 29, 188
BslI CCNNNNNNNGG 4 cut(s) 100, 139, 247, 312
BsoBI CYCGRG 2 cut(s) 29, 188
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 1 cut(s) 231
BspACI CCGC 6 cut(s) 60, 65, 68, 107, 281, 289
BspFNI CGCG 1 cut(s) 109
BspLI GGNNCC 3 cut(s) 6, 105, 152
BspMI ACCTGC 1 cut(s) 231
BsrBI CCGCTC 1 cut(s) 62
BsrI ACTGG 1 cut(s) 12
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 1 cut(s) 231
BssNI GRCGYC 1 cut(s) 112
BssT1I CCWWGG 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 248
BstACI GRCGYC 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 181
BstFNI CGCG 1 cut(s) 109
BstHHI GCGC 1 cut(s) 305
BstKTI GATC 1 cut(s) 234
BstMBI GATC 1 cut(s) 231
BstMWI GCNNNNNNNGC 2 cut(s) 157, 309
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 246
BstUI CGCG 1 cut(s) 109
BveI ACCTGC 1 cut(s) 231
Cac8I GCNNGC 1 cut(s) 181
CfoI GCGC 1 cut(s) 305
Cfr13I GGNCC 2 cut(s) 23, 220
CseI GACGC 1 cut(s) 120
Csp6I GTAC 1 cut(s) 238
CviJI RGCY 3 cut(s) 5, 34, 151
CviKI_1 RGCY 3 cut(s) 5, 34, 151
CviQI GTAC 1 cut(s) 238
DpnI GATC 1 cut(s) 233
DpnII GATC 1 cut(s) 231
EciI GGCGGA 2 cut(s) 54, 296
Ecl136II GAGCTC 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 94
Eco24I GRGCYC 1 cut(s) 36
Eco47I GGWCC 2 cut(s) 23, 220
Eco53kI GAGCTC 1 cut(s) 34
Eco88I CYCGRG 2 cut(s) 29, 188
EcoICRI GAGCTC 1 cut(s) 34
EcoO109I RGGNCCY 1 cut(s) 220
EcoRII CCWGG 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 94
EcoT38I GRGCYC 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 94
FaiI YATR 2 cut(s) 135, 137
FauI CCCGC 1 cut(s) 282
FauNDI CATATG 1 cut(s) 135
Fnu4HI GCNGC 1 cut(s) 68
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 68
GlaI GCGC 1 cut(s) 304
GluI GCNGC 1 cut(s) 68
GsuI CTGGAG 2 cut(s) 248, 269
HgaI GACGC 1 cut(s) 120
HhaI GCGC 1 cut(s) 305
Hin1I GRCGYC 1 cut(s) 112
Hin6I GCGC 1 cut(s) 303
HinP1I GCGC 1 cut(s) 303
HinfI GANTC 4 cut(s) 83, 191, 243, 257
HphI GGTGA 3 cut(s) 39, 110, 266
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 2 cut(s) 29, 101
Hpy8I GTNNAC 1 cut(s) 238
Hpy99I CGWCG 1 cut(s) 114
HpyAV CCTTC 2 cut(s) 205, 271
HpyCH4V TGCA 1 cut(s) 183
HpyF10VI GCNNNNNNNGC 2 cut(s) 157, 309
Hsp92I GRCGYC 1 cut(s) 112
HspAI GCGC 1 cut(s) 303
Kzo9I GATC 1 cut(s) 231
LmnI GCTCC 4 cut(s) 10, 39, 67, 156
LpnPI CCDG 8 cut(s) 25, 86, 193, 212, 233, 236, 260, 298
MalI GATC 1 cut(s) 233
MbiI CCGCTC 1 cut(s) 62
MboI GATC 1 cut(s) 231
MboII GAAGA 1 cut(s) 280
MhlI GDGCHC 1 cut(s) 36
MlyI GAGTC 2 cut(s) 200, 237
MspR9I CCNGG 1 cut(s) 248
MvaI CCWGG 1 cut(s) 248
MvnI CGCG 1 cut(s) 109
MwoI GCNNNNNNNGC 2 cut(s) 157, 309
NdeI CATATG 1 cut(s) 135
NdeII GATC 1 cut(s) 231
NlaIV GGNNCC 3 cut(s) 6, 105, 152
PaeR7I CTCGAG 1 cut(s) 188
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PfeI GAWTC 2 cut(s) 83, 257
PflMI CCANNNNNTGG 2 cut(s) 100, 139
PfoI TCCNGGA 1 cut(s) 246
PkrI GCNGC 1 cut(s) 69
PleI GAGTC 2 cut(s) 199, 237
PpsI GAGTC 2 cut(s) 199, 237
PpuMI RGGWCCY 1 cut(s) 220
Psp124BI GAGCTC 1 cut(s) 36
Psp5II RGGWCCY 1 cut(s) 220
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 3 cut(s) 6, 105, 152
PspPI GGNCC 2 cut(s) 23, 220
PspPPI RGGWCCY 1 cut(s) 220
PspXI VCTCGAGB 1 cut(s) 188
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
SacI GAGCTC 1 cut(s) 36
SatI GCNGC 1 cut(s) 68
Sau3AI GATC 1 cut(s) 231
Sau96I GGNCC 2 cut(s) 23, 220
SchI GAGTC 2 cut(s) 200, 237
ScrFI CCNGG 1 cut(s) 248
SduI GDGCHC 1 cut(s) 36
SetI ASST 4 cut(s) 36, 100, 189, 225
Sfr274I CTCGAG 1 cut(s) 188
SinI GGWCC 2 cut(s) 23, 220
SlaI CTCGAG 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
SsiI CCGC 6 cut(s) 60, 65, 68, 107, 281, 289
SstI GAGCTC 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 246
StyI CCWWGG 1 cut(s) 94
TaqI TCGA 2 cut(s) 81, 189
TaqII GACCGA 1 cut(s) 11
TauI GCSGC 1 cut(s) 70
TfiI GAWTC 2 cut(s) 83, 257
TspGWI ACGGA 1 cut(s) 250
Van91I CCANNNNNTGG 2 cut(s) 100, 139
VpaK11BI GGWCC 2 cut(s) 23, 220
XhoI CTCGAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.