RLG00000029632

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0015775
Physical Location & Seq
Reverse (-)
41696616 .. 41697172
557 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029632

Sequence Viewer

Length: 354 bp
ATGCTCAAGCTCATCTGCAACCTCCACGGCATGCATGGCACTGGAAAGTCCGACAACGAAGGCTTCCATACGATGGTGTTTTGGCTCCACAAGCACCACCCCAAAACCCTCGCCTGCAACCTCGCATCCTTCGCCGAGTTCGGTTACTTCAAGGACCTGCCGGAGATCTTGTACCGGCTTCTGGAAGGCAAGGACGTGAGAAAGAAACAGAAGACGGAGTTGCGGGAGAGGAAACGAGCCCGAGGCAGGAAGCGATGGGAATCCAGATCCGACGGTGAAATCGGGTCTAGTTCTCCGAGCAGTGAAGAGAAGCGGCATGGAGATATCGGAACCCGTGGTGGCTTGCATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

118

Amino Acids

13.51

Weight (kDa)

9.77

Isoelectric Point (pI)

57.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 2 - 98 2.2e-25 Domain of unknown function (DUF2828)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 165
AccB7I CCANNNNNTGG 1 cut(s) 73
AciI CCGC 2 cut(s) 223, 313
AclWI GGATC 1 cut(s) 261
AfaI GTAC 1 cut(s) 173
AfiI CCNNNNNNNGG 3 cut(s) 73, 181, 246
AgsI TTSAA 1 cut(s) 151
AjiI CACGTC 1 cut(s) 196
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
AlwI GGATC 1 cut(s) 261
Ama87I CYCGRG 1 cut(s) 240
AspS9I GGNCC 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 287
AvaI CYCGRG 1 cut(s) 240
AvaII GGWCC 1 cut(s) 154
BanII GRGCYC 1 cut(s) 241
BbsI GAAGAC 1 cut(s) 218
BccI CCATC 2 cut(s) 67, 249
BceAI ACGGC 1 cut(s) 43
BfaI CTAG 1 cut(s) 288
BfuAI ACCTGC 1 cut(s) 165
BglII AGATCT 1 cut(s) 165
BisI GCNGC 1 cut(s) 314
BlsI GCNGC 1 cut(s) 315
Bme18I GGWCC 1 cut(s) 154
BmeT110I CYCGRG 1 cut(s) 240
BmgBI CACGTC 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 2 cut(s) 86, 331
BmsI GCATC 1 cut(s) 134
BpiI GAAGAC 1 cut(s) 218
BsaBI GATNNNNATC 1 cut(s) 259
BsaJI CCNNGG 3 cut(s) 25, 241, 334
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bsc4I CCNNNNNNNGG 3 cut(s) 73, 181, 246
Bse118I RCCGGY 1 cut(s) 174
Bse1I ACTGG 1 cut(s) 46
Bse8I GATNNNNATC 1 cut(s) 259
BseDI CCNNGG 3 cut(s) 25, 241, 334
BseGI GGATG 1 cut(s) 125
BseJI GATNNNNATC 1 cut(s) 259
BseLI CCNNNNNNNGG 3 cut(s) 73, 181, 246
BseNI ACTGG 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 240
BsiSI CCGG 2 cut(s) 161, 175
BslI CCNNNNNNNGG 3 cut(s) 73, 181, 246
BsoBI CYCGRG 1 cut(s) 240
Bsp1286I GDGCHC 1 cut(s) 241
Bsp143I GATC 2 cut(s) 165, 266
BspACI CCGC 2 cut(s) 223, 313
BspLI GGNNCC 2 cut(s) 86, 331
BspMI ACCTGC 1 cut(s) 165
BspPI GGATC 1 cut(s) 261
BsrFI RCCGGY 1 cut(s) 174
BsrI ACTGG 1 cut(s) 46
BssAI RCCGGY 1 cut(s) 174
BssECI CCNNGG 3 cut(s) 25, 241, 334
BssMI GATC 2 cut(s) 165, 266
Bst4CI ACNGT 1 cut(s) 275
Bst6I CTCTTC 1 cut(s) 300
BstC8I GCNNGC 3 cut(s) 32, 115, 344
BstDSI CCRYGG 2 cut(s) 25, 334
BstF5I GGATG 1 cut(s) 125
BstKTI GATC 2 cut(s) 168, 269
BstMBI GATC 2 cut(s) 165, 266
BstMWI GCNNNNNNNGC 3 cut(s) 36, 91, 131
BstNSI RCATGY 1 cut(s) 34
BstV2I GAAGAC 1 cut(s) 218
BstX2I RGATCY 2 cut(s) 165, 266
BstYI RGATCY 2 cut(s) 165, 266
BtgI CCRYGG 2 cut(s) 25, 334
BtgZI GCGATG 1 cut(s) 268
BtrI CACGTC 1 cut(s) 196
BtsCI GGATG 1 cut(s) 125
BtsI GCAGTG 1 cut(s) 307
BtsIMutI CAGTG 2 cut(s) 39, 307
BveI ACCTGC 1 cut(s) 165
Cac8I GCNNGC 3 cut(s) 32, 115, 344
Cfr10I RCCGGY 1 cut(s) 174
Cfr13I GGNCC 1 cut(s) 154
Csp6I GTAC 1 cut(s) 172
CviAII CATG 3 cut(s) 31, 35, 317
CviJI RGCY 6 cut(s) 10, 63, 85, 178, 239, 342
CviKI_1 RGCY 6 cut(s) 10, 63, 85, 178, 239, 342
CviQI GTAC 1 cut(s) 172
DpnI GATC 2 cut(s) 167, 268
DpnII GATC 2 cut(s) 165, 266
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Eco24I GRGCYC 1 cut(s) 241
Eco32I GATATC 1 cut(s) 325
Eco47I GGWCC 1 cut(s) 154
Eco88I CYCGRG 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 154
EcoRV GATATC 1 cut(s) 325
EcoT22I ATGCAT 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 241
FaeI CATG 3 cut(s) 34, 38, 320
FaiI YATR 4 cut(s) 32, 36, 69, 318
FatI CATG 3 cut(s) 30, 34, 316
FauI CCCGC 1 cut(s) 216
Fnu4HI GCNGC 1 cut(s) 314
FokI GGATG 1 cut(s) 112
FriOI GRGCYC 1 cut(s) 241
Fsp4HI GCNGC 1 cut(s) 314
FspBI CTAG 1 cut(s) 288
GluI GCNGC 1 cut(s) 314
HapII CCGG 2 cut(s) 161, 175
Hin1II CATG 3 cut(s) 34, 38, 320
HinfI GANTC 1 cut(s) 260
HpaII CCGG 2 cut(s) 161, 175
HphI GGTGA 1 cut(s) 287
Hpy188I TCNGA 5 cut(s) 52, 271, 297, 329, 353
Hpy188III TCNNGA 2 cut(s) 182, 264
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 3 cut(s) 53, 139, 179
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 4 cut(s) 18, 34, 117, 346
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 91, 131
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 3 cut(s) 34, 38, 320
Kzo9I GATC 2 cut(s) 165, 266
LmnI GCTCC 1 cut(s) 90
LpnPI CCDG 8 cut(s) 27, 127, 167, 170, 174, 188, 232, 277
LweI GCATC 1 cut(s) 134
MaeI CTAG 1 cut(s) 288
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 1 cut(s) 143
MalI GATC 2 cut(s) 167, 268
MboI GATC 2 cut(s) 165, 266
MboII GAAGA 2 cut(s) 223, 317
MflI RGATCY 2 cut(s) 165, 266
MhlI GDGCHC 1 cut(s) 241
MmeI TCCRAC 2 cut(s) 75, 294
MnlI CCTC 5 cut(s) 32, 119, 131, 222, 236
Mph1103I ATGCAT 1 cut(s) 36
MspI CCGG 2 cut(s) 161, 175
MwoI GCNNNNNNNGC 3 cut(s) 36, 91, 131
NdeII GATC 2 cut(s) 165, 266
NlaIII CATG 3 cut(s) 34, 38, 320
NlaIV GGNNCC 2 cut(s) 86, 331
NmeAIII GCCGAG 1 cut(s) 160
NsiI ATGCAT 1 cut(s) 36
NspI RCATGY 1 cut(s) 34
PaeI GCATGC 1 cut(s) 34
PfeI GAWTC 1 cut(s) 260
PflMI CCANNNNNTGG 1 cut(s) 73
PkrI GCNGC 1 cut(s) 315
PpuMI RGGWCCY 1 cut(s) 154
Psp5II RGGWCCY 1 cut(s) 154
PspN4I GGNNCC 2 cut(s) 86, 331
PspPI GGNCC 1 cut(s) 154
PspPPI RGGWCCY 1 cut(s) 154
PsuI RGATCY 2 cut(s) 165, 266
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
SatI GCNGC 1 cut(s) 314
Sau3AI GATC 2 cut(s) 165, 266
Sau96I GGNCC 1 cut(s) 154
SduI GDGCHC 1 cut(s) 241
SetI ASST 5 cut(s) 12, 24, 123, 159, 198
SfaNI GCATC 1 cut(s) 134
SinI GGWCC 1 cut(s) 154
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
SphI GCATGC 1 cut(s) 34
SsiI CCGC 2 cut(s) 223, 313
SspMI CTAG 1 cut(s) 288
TaaI ACNGT 1 cut(s) 275
TaiI ACGT 1 cut(s) 198
TauI GCSGC 1 cut(s) 316
TfiI GAWTC 1 cut(s) 260
TscAI CASTG 2 cut(s) 46, 307
TspGWI ACGGA 1 cut(s) 230
TspRI CASTG 2 cut(s) 46, 307
Van91I CCANNNNNTGG 1 cut(s) 73
VpaK11BI GGWCC 1 cut(s) 154
XceI RCATGY 1 cut(s) 34
XcmI CCANNNNNNNNNTGG 1 cut(s) 32
XspI CTAG 1 cut(s) 288
Zsp2I ATGCAT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.