Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0015775

Physical Location & Seq

Genomic Coordinates Reverse (-)

8961128 .. 8961632

Gene Structure 505 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00225670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCTGCGTTTTGGCTTCACAAGCACCACCCCAAAACTCGCTTGCAACCTCGTGTCCTTCTCCGAGTTCGGTTACTTCAAGGACTTGCGGGAGATCGTGTACCGCGGCAGGGCGAGGACGTGAGGAAGAAACAGAAGGTGGAGTGGCGAGAGAGGAAATGCACCGGAGGTAGGAAGCGACGGGAATCCGGATCCGACGGCGAAACCGGGTCGAGCTCCGAGAAGAAGAGAATCGAGAAGAAAGAGGAGAGAGAGAAGAAGACGATTCGTTCTCCAAGCGGCGAAGAGAAGCGGCATGAAGATATCGGAACCCGTGGTGGCTTGCATTTCCGACTTGGCCTTCAAATTTACTGGTATTTTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2828

Protein Analysis

121

Amino Acids

14.29

Weight (kDa)

10.54

Isoelectric Point (pI)

66.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015775)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000029583 RLG00000029632 RLG00000031683
rosa_multiflora	Rmu_sc0000670.1_g000015 Rmu_sc0004284.1_g000002
rosa_roxburghii	Rroxscaffold_1G00004070 Rroxscaffold_3G00225670
rosa_samantha	Rh2BG087600 Rh2BG143500 Rh2BG172700 Rh3BG259600 Rh4DG167300 Rh5BG514500 Rh5BG535900 Rh5CG538100 Rh6AG162500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	106
AccIII	TCCGGA	1 cut(s)	188
AciI	CCGC	5 cut(s)	89, 104, 106, 279, 292
AclWI	GGATC	2 cut(s)	186, 199
AcsI	RAATTY	1 cut(s)	345
AfaI	GTAC	1 cut(s)	102
AfiI	CCNNNNNNNGG	2 cut(s)	110, 171
AgsI	TTSAA	2 cut(s)	80, 344
AjiI	CACGTC	1 cut(s)	121
AluBI	AGCT	1 cut(s)	216
AluI	AGCT	1 cut(s)	216
Alw21I	GWGCWC	1 cut(s)	218
AlwI	GGATC	2 cut(s)	186, 199
Aor13HI	TCCGGA	1 cut(s)	188
AoxI	GGCC	1 cut(s)	337
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	345
AsuC2I	CCSGG	1 cut(s)	208
BamHI	GGATCC	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	218
BauI	CACGAG	1 cut(s)	51
BbsI	GAAGAC	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	218
BceAI	ACGGC	1 cut(s)	214
BcnI	CCSGG	1 cut(s)	208
BisI	GCNGC	4 cut(s)	6, 107, 280, 293
BlsI	GCNGC	4 cut(s)	7, 108, 281, 294
Bme1390I	CCNGG	1 cut(s)	208
BmgBI	CACGTC	1 cut(s)	121
BmiI	GGNNCC	2 cut(s)	193, 310
BmrFI	CCNGG	1 cut(s)	208
BpiI	GAAGAC	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	208
BsaJI	CCNNGG	2 cut(s)	104, 313
BsaWI	WCCGGW	2 cut(s)	164, 188
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 171
Bse1I	ACTGG	1 cut(s)	356
BseAI	TCCGGA	1 cut(s)	188
BseDI	CCNNGG	2 cut(s)	104, 313
BseLI	CCNNNNNNNGG	2 cut(s)	110, 171
BseNI	ACTGG	1 cut(s)	356
BseRI	GAGGAG	1 cut(s)	260
Bsh1236I	CGCG	1 cut(s)	106
BshFI	GGCC	1 cut(s)	339
BsiHKAI	GWGCWC	1 cut(s)	218
BsiSI	CCGG	3 cut(s)	165, 189, 207
BslI	CCNNNNNNNGG	2 cut(s)	110, 171
BsnI	GGCC	1 cut(s)	339
Bsp1286I	GDGCHC	1 cut(s)	218
Bsp13I	TCCGGA	1 cut(s)	188
Bsp143I	GATC	2 cut(s)	94, 191
BspACI	CCGC	5 cut(s)	89, 104, 106, 279, 292
BspANI	GGCC	1 cut(s)	339
BspEI	TCCGGA	1 cut(s)	188
BspFNI	CGCG	1 cut(s)	106
BspLI	GGNNCC	2 cut(s)	193, 310
BspPI	GGATC	2 cut(s)	186, 199
BsrI	ACTGG	1 cut(s)	356
BssECI	CCNNGG	2 cut(s)	104, 313
BssMI	GATC	2 cut(s)	94, 191
BssSI	CACGAG	1 cut(s)	51
Bst2BI	CACGAG	1 cut(s)	51
Bst6I	CTCTTC	2 cut(s)	221, 279
BstC8I	GCNNGC	2 cut(s)	44, 323
BstDSI	CCRYGG	2 cut(s)	104, 313
BstFNI	CGCG	1 cut(s)	106
BstKTI	GATC	2 cut(s)	97, 194
BstMBI	GATC	2 cut(s)	94, 191
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	206
BstUI	CGCG	1 cut(s)	106
BstV2I	GAAGAC	1 cut(s)	266
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BsuRI	GGCC	1 cut(s)	339
BtgI	CCRYGG	2 cut(s)	104, 313
BtrI	CACGTC	1 cut(s)	121
Cac8I	GCNNGC	2 cut(s)	44, 323
Cfr42I	CCGCGG	1 cut(s)	107
Csp6I	GTAC	1 cut(s)	101
CviAII	CATG	1 cut(s)	296
CviJI	RGCY	5 cut(s)	5, 16, 216, 321, 339
CviKI_1	RGCY	5 cut(s)	5, 16, 216, 321, 339
CviQI	GTAC	1 cut(s)	101
DpnI	GATC	2 cut(s)	96, 193
DpnII	GATC	2 cut(s)	94, 191
Eam1104I	CTCTTC	2 cut(s)	221, 279
EarI	CTCTTC	2 cut(s)	221, 279
Ecl136II	GAGCTC	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	218
Eco32I	GATATC	1 cut(s)	304
Eco53kI	GAGCTC	1 cut(s)	216
EcoICRI	GAGCTC	1 cut(s)	216
EcoRV	GATATC	1 cut(s)	304
EcoT38I	GRGCYC	1 cut(s)	218
FaeI	CATG	1 cut(s)	299
FaiI	YATR	1 cut(s)	297
FatI	CATG	1 cut(s)	295
FauI	CCCGC	1 cut(s)	82
Fnu4HI	GCNGC	4 cut(s)	6, 107, 280, 293
FriOI	GRGCYC	1 cut(s)	218
Fsp4HI	GCNGC	4 cut(s)	6, 107, 280, 293
GluI	GCNGC	4 cut(s)	6, 107, 280, 293
HaeIII	GGCC	1 cut(s)	339
HapII	CCGG	3 cut(s)	165, 189, 207
Hin1II	CATG	1 cut(s)	299
HinfI	GANTC	3 cut(s)	185, 231, 265
HpaII	CCGG	3 cut(s)	165, 189, 207
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	5 cut(s)	65, 196, 220, 308, 332
Hpy188III	TCNNGA	2 cut(s)	189, 235
Hpy8I	GTNNAC	1 cut(s)	101
Hpy99I	CGWCG	2 cut(s)	183, 200
HpyAV	CCTTC	3 cut(s)	68, 130, 350
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	3 cut(s)	46, 162, 325
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	299
Kpn2I	TCCGGA	1 cut(s)	188
KspI	CCGCGG	1 cut(s)	107
Kzo9I	GATC	2 cut(s)	94, 191
LmnI	GCTCC	1 cut(s)	221
LpnPI	CCDG	5 cut(s)	95, 178, 202, 220, 337
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	72
MalI	GATC	2 cut(s)	96, 193
MboI	GATC	2 cut(s)	94, 191
MboII	GAAGA	8 cut(s)	139, 235, 238, 250, 268, 271, 296, 311
MflI	RGATCY	1 cut(s)	191
MhlI	GDGCHC	1 cut(s)	218
MluCI	AATT	1 cut(s)	345
MmeI	TCCRAC	2 cut(s)	219, 355
MnlI	CCTC	6 cut(s)	60, 109, 117, 147, 161, 238
MroI	TCCGGA	1 cut(s)	188
MseI	TTAA	1 cut(s)	364
MspA1I	CMGCKG	1 cut(s)	106
MspI	CCGG	3 cut(s)	165, 189, 207
MspR9I	CCNGG	1 cut(s)	208
MvnI	CGCG	1 cut(s)	106
MwoI	GCNNNNNNNGC	1 cut(s)	22
NciI	CCSGG	1 cut(s)	208
NdeII	GATC	2 cut(s)	94, 191
NlaIII	CATG	1 cut(s)	299
NlaIV	GGNNCC	2 cut(s)	193, 310
PfeI	GAWTC	3 cut(s)	185, 231, 265
PkrI	GCNGC	4 cut(s)	7, 108, 281, 294
Psp124BI	GAGCTC	1 cut(s)	218
PspN4I	GGNNCC	2 cut(s)	193, 310
PsuI	RGATCY	1 cut(s)	191
RsaI	GTAC	1 cut(s)	102
RsaNI	GTAC	1 cut(s)	101
SacI	GAGCTC	1 cut(s)	218
SacII	CCGCGG	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	364
SatI	GCNGC	4 cut(s)	6, 107, 280, 293
Sau3AI	GATC	2 cut(s)	94, 191
ScrFI	CCNGG	1 cut(s)	208
SduI	GDGCHC	1 cut(s)	218
SetI	ASST	5 cut(s)	52, 123, 141, 172, 218
Sfr303I	CCGCGG	1 cut(s)	107
SgrBI	CCGCGG	1 cut(s)	107
Sse9I	AATT	1 cut(s)	345
SsiI	CCGC	5 cut(s)	89, 104, 106, 279, 292
SstI	GAGCTC	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	206
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	2 cut(s)	212, 234
TasI	AATT	1 cut(s)	345
TauI	GCSGC	3 cut(s)	109, 282, 295
TfiI	GAWTC	3 cut(s)	185, 231, 265
Tru1I	TTAA	1 cut(s)	364
Tru9I	TTAA	1 cut(s)	364
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	312
XapI	RAATTY	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.