Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0015775

Physical Location & Seq

Genomic Coordinates Forward (+)

33313134 .. 33317093

Gene Structure 3960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG167300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCTCCTCCCAGTCTTCTCGGTCCTCCCGAGCTCCACAAATCCTCACCCACCACCACCGCTCCGCCGCCACCCGAACCCGAATCCAAACCCCAAGGCCTGGAACTGGAAAGTCCGACAAGGAAGGCTTCCATATGGCGGCGTTTTGGCTCCACAAGCACCACCCCAAAACTCGCTTGCAACCTCCCGTCCTTCTCCGAGTTCGGTTACTTCAAGGACCTGCCGGAGATCGTGTACCGGCTTCTGGAGAGCGAGGACGTGAGGAAGAAACAGAAGGCGGAGTGGCGGGAGAGGAAATGCACCGGGAGGCAGGAAGCGACGGGAATCCGGATCCGACGGCGAAACCGGGTCGAGCTCCGAGAAGAAGAGAATCGGAAGAAAGAGAGGAAAATGGAGAGTGAAGAAGACGATTCAGTGAGCGAGGTTCTCCGAGATCGATTCAGACTCTCCACCATCTCAATCGCCGATGCCGAAGTTCTCCAAGCAGCGAAGAGAAGCGGCATGGAGATATCGGAATCCGTGGTGGCTTGCATTTCTGACTTGGCCTCCAAATTTACTGGTCTCTTTGCTTTGGAGACATGGAGCAATAAGCAATGCCAAGCATTCCCCAAATTGGAGGTAGGAGGTGGGATCAATTCAGATAATTCTTTGCAATACATAGAAGAAGGGGCTAGCCACGTCATTGTCACTTCTTATGTATTTAATAATGGGCAAAACCTTGAAAGGCTTAAAGATCTTGTTCGTGTTGTTGGAAAAGAAAGGCTTGTTTTAGACCTTAGCTGTAGAAAGAGGGAAGGTAAATATGCAATTGTCACAGATAGATGGCAAAAGTTTAGTGACATGTATCTTGACAAGGAAATATTAGACTTCCTTGCCAAGTATGCAGACGAGTTTCTGGTACATGGTGTCGATGTGGAAGGGAAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0000162 GO:0003674 GO:0003824 GO:0003949 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

His_biosynth

Protein Analysis

309

Amino Acids

35.19

Weight (kDa)

7.58

Isoelectric Point (pI)

57.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF2828	PF11443	65 - 135	9.3e-07	Domain of unknown function (DUF2828)
His_biosynth	PF00977	199 - 308	1.1e-10	Histidine biosynthesis protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015775)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000029583 RLG00000029632 RLG00000031683
rosa_multiflora	Rmu_sc0000670.1_g000015 Rmu_sc0004284.1_g000002
rosa_roxburghii	Rroxscaffold_1G00004070 Rroxscaffold_3G00225670
rosa_samantha	Rh2BG087600 Rh2BG143500 Rh2BG172700 Rh3BG259600 Rh4DG167300 Rh5BG514500 Rh5BG535900 Rh5CG538100 Rh6AG162500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	228
AccB7I	CCANNNNNTGG	1 cut(s)	100
AccBSI	CCGCTC	1 cut(s)	62
AccIII	TCCGGA	1 cut(s)	327
AciI	CCGC	7 cut(s)	60, 65, 68, 139, 278, 286, 498
AclWI	GGATC	3 cut(s)	325, 338, 638
AcsI	RAATTY	1 cut(s)	551
AfaI	GTAC	2 cut(s)	236, 900
AfiI	CCNNNNNNNGG	5 cut(s)	100, 106, 138, 244, 613
AflIII	ACRYGT	1 cut(s)	840
AgsI	TTSAA	2 cut(s)	214, 722
AjiI	CACGTC	2 cut(s)	259, 679
AjnI	CCWGG	1 cut(s)	99
AluBI	AGCT	3 cut(s)	34, 355, 780
AluI	AGCT	3 cut(s)	34, 355, 780
Alw21I	GWGCWC	2 cut(s)	36, 357
Alw26I	GTCTC	2 cut(s)	566, 569
AlwI	GGATC	3 cut(s)	325, 338, 638
Ama87I	CYCGRG	1 cut(s)	29
Aor13HI	TCCGGA	1 cut(s)	327
AoxI	GGCC	2 cut(s)	97, 543
ApeKI	GCWGC	1 cut(s)	485
ApoI	RAATTY	1 cut(s)	551
AspS9I	GGNCC	2 cut(s)	23, 217
AsuC2I	CCSGG	2 cut(s)	304, 347
AsuHPI	GGTGA	1 cut(s)	39
AsuNHI	GCTAGC	1 cut(s)	671
AvaI	CYCGRG	1 cut(s)	29
AvaII	GGWCC	2 cut(s)	23, 217
BamHI	GGATCC	1 cut(s)	330
BanII	GRGCYC	2 cut(s)	36, 357
BbsI	GAAGAC	2 cut(s)	8, 411
Bbv12I	GWGCWC	2 cut(s)	36, 357
BbvI	GCAGC	1 cut(s)	497
BccI	CCATC	2 cut(s)	461, 816
BceAI	ACGGC	1 cut(s)	353
BciT130I	CCWGG	1 cut(s)	101
BcnI	CCSGG	2 cut(s)	304, 347
BcoDI	GTCTC	2 cut(s)	566, 569
BfaI	CTAG	1 cut(s)	672
BfmI	CTRYAG	1 cut(s)	781
BfuAI	ACCTGC	1 cut(s)	228
BglII	AGATCT	1 cut(s)	733
BisI	GCNGC	4 cut(s)	68, 140, 486, 499
BlsI	GCNGC	4 cut(s)	69, 141, 487, 500
Bme1390I	CCNGG	3 cut(s)	101, 304, 347
Bme18I	GGWCC	2 cut(s)	23, 217
BmeT110I	CYCGRG	1 cut(s)	29
BmgBI	CACGTC	2 cut(s)	259, 679
BmgT120I	GGNCC	2 cut(s)	23, 217
BmiI	GGNNCC	3 cut(s)	6, 151, 332
BmrFI	CCNGG	3 cut(s)	101, 304, 347
BmrI	ACTGGG	1 cut(s)	6
BmsI	GCATC	1 cut(s)	457
BmtI	GCTAGC	1 cut(s)	675
BmuI	ACTGGG	1 cut(s)	6
BpiI	GAAGAC	2 cut(s)	8, 411
BpmI	CTGGAG	1 cut(s)	266
Bpu10I	CCTNAGC	1 cut(s)	776
BpuMI	CCSGG	2 cut(s)	304, 347
Bsa29I	ATCGAT	1 cut(s)	436
BsaI	GGTCTC	1 cut(s)	566
BsaJI	CCNNGG	2 cut(s)	94, 519
BsaWI	WCCGGW	1 cut(s)	327
BsaXI	ACNNNNNCTCC	6 cut(s)	46, 76, 218, 248, 530, 560
Bsc4I	CCNNNNNNNGG	5 cut(s)	100, 106, 138, 244, 613
Bse118I	RCCGGY	1 cut(s)	237
Bse1I	ACTGG	3 cut(s)	12, 111, 562
Bse3DI	GCAATG	1 cut(s)	599
BseAI	TCCGGA	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	101
BseCI	ATCGAT	1 cut(s)	436
BseDI	CCNNGG	2 cut(s)	94, 519
BseLI	CCNNNNNNNGG	5 cut(s)	100, 106, 138, 244, 613
BseMI	GCAATG	1 cut(s)	599
BseNI	ACTGG	3 cut(s)	12, 111, 562
BseXI	GCAGC	1 cut(s)	497
BshFI	GGCC	2 cut(s)	99, 545
BshVI	ATCGAT	1 cut(s)	436
BsiHKAI	GWGCWC	2 cut(s)	36, 357
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	5 cut(s)	224, 238, 303, 328, 346
BslI	CCNNNNNNNGG	5 cut(s)	100, 106, 138, 244, 613
BsmAI	GTCTC	2 cut(s)	566, 569
BsmI	GAATGC	1 cut(s)	602
BsnI	GGCC	2 cut(s)	99, 545
Bso31I	GGTCTC	1 cut(s)	566
BsoBI	CYCGRG	1 cut(s)	29
Bsp1286I	GDGCHC	2 cut(s)	36, 357
Bsp13I	TCCGGA	1 cut(s)	327
Bsp143I	GATC	5 cut(s)	228, 330, 433, 630, 733
BspACI	CCGC	7 cut(s)	60, 65, 68, 139, 278, 286, 498
BspANI	GGCC	2 cut(s)	99, 545
BspDI	ATCGAT	1 cut(s)	436
BspEI	TCCGGA	1 cut(s)	327
BspLI	GGNNCC	3 cut(s)	6, 151, 332
BspMI	ACCTGC	1 cut(s)	228
BspOI	GCTAGC	1 cut(s)	675
BspPI	GGATC	3 cut(s)	325, 338, 638
BspTNI	GGTCTC	1 cut(s)	566
BsrBI	CCGCTC	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	599
BsrFI	RCCGGY	1 cut(s)	237
BsrI	ACTGG	3 cut(s)	12, 111, 562
BssAI	RCCGGY	1 cut(s)	237
BssECI	CCNNGG	2 cut(s)	94, 519
BssMI	GATC	5 cut(s)	228, 330, 433, 630, 733
BssT1I	CCWWGG	1 cut(s)	94
Bst2UI	CCWGG	1 cut(s)	101
Bst6I	CTCTTC	2 cut(s)	360, 485
BstC8I	GCNNGC	3 cut(s)	178, 529, 673
BstDEI	CTNAG	1 cut(s)	776
BstDSI	CCRYGG	1 cut(s)	519
BstKTI	GATC	5 cut(s)	231, 333, 436, 633, 736
BstMAI	GTCTC	2 cut(s)	566, 569
BstMBI	GATC	5 cut(s)	228, 330, 433, 630, 733
BstMWI	GCNNNNNNNGC	2 cut(s)	156, 881
BstNI	CCWGG	1 cut(s)	101
BstNSI	RCATGY	1 cut(s)	844
BstSCI	CCNGG	3 cut(s)	99, 302, 345
BstSFI	CTRYAG	1 cut(s)	781
BstV1I	GCAGC	1 cut(s)	497
BstV2I	GAAGAC	2 cut(s)	8, 411
BstX2I	RGATCY	2 cut(s)	330, 733
BstYI	RGATCY	2 cut(s)	330, 733
Bsu15I	ATCGAT	1 cut(s)	436
BsuRI	GGCC	2 cut(s)	99, 545
BsuTUI	ATCGAT	1 cut(s)	436
BtgI	CCRYGG	1 cut(s)	519
BtrI	CACGTC	2 cut(s)	259, 679
BtsIMutI	CAGTG	1 cut(s)	420
BveI	ACCTGC	1 cut(s)	228
Cac8I	GCNNGC	3 cut(s)	178, 529, 673
Cfr10I	RCCGGY	1 cut(s)	237
Cfr13I	GGNCC	2 cut(s)	23, 217
ClaI	ATCGAT	1 cut(s)	436
Csp6I	GTAC	2 cut(s)	235, 899
CviAII	CATG	4 cut(s)	502, 579, 841, 902
CviQI	GTAC	2 cut(s)	235, 899
DdeI	CTNAG	1 cut(s)	776
DpnI	GATC	5 cut(s)	230, 332, 435, 632, 735
DpnII	GATC	5 cut(s)	228, 330, 433, 630, 733
Eam1104I	CTCTTC	2 cut(s)	360, 485
EarI	CTCTTC	2 cut(s)	360, 485
EciI	GGCGGA	2 cut(s)	54, 293
Ecl136II	GAGCTC	2 cut(s)	34, 355
Eco130I	CCWWGG	1 cut(s)	94
Eco147I	AGGCCT	1 cut(s)	99
Eco24I	GRGCYC	2 cut(s)	36, 357
Eco31I	GGTCTC	1 cut(s)	566
Eco32I	GATATC	1 cut(s)	510
Eco47I	GGWCC	2 cut(s)	23, 217
Eco53kI	GAGCTC	2 cut(s)	34, 355
Eco88I	CYCGRG	1 cut(s)	29
EcoICRI	GAGCTC	2 cut(s)	34, 355
EcoO109I	RGGNCCY	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	99
EcoRV	GATATC	1 cut(s)	510
EcoT14I	CCWWGG	1 cut(s)	94
EcoT38I	GRGCYC	2 cut(s)	36, 357
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	4 cut(s)	505, 582, 844, 905
FalI	AAGNNNNNCTT	4 cut(s)	112, 144, 747, 779
FatI	CATG	4 cut(s)	501, 578, 840, 901
FauI	CCCGC	1 cut(s)	279
FauNDI	CATATG	1 cut(s)	134
Fnu4HI	GCNGC	4 cut(s)	68, 140, 486, 499
FriOI	GRGCYC	2 cut(s)	36, 357
Fsp4HI	GCNGC	4 cut(s)	68, 140, 486, 499
FspBI	CTAG	1 cut(s)	672
GluI	GCNGC	4 cut(s)	68, 140, 486, 499
GsuI	CTGGAG	1 cut(s)	266
HaeIII	GGCC	2 cut(s)	99, 545
HapII	CCGG	5 cut(s)	224, 238, 303, 328, 346
Hin1II	CATG	4 cut(s)	505, 582, 844, 905
HinfI	GANTC	7 cut(s)	83, 324, 370, 410, 438, 444, 515
HpaII	CCGG	5 cut(s)	224, 238, 303, 328, 346
HphI	GGTGA	1 cut(s)	39
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188III	TCNNGA	4 cut(s)	29, 245, 328, 848
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	2 cut(s)	322, 339
HpyAV	CCTTC	6 cut(s)	118, 202, 268, 659, 788, 911
HpyCH4IV	ACGT	2 cut(s)	258, 678
HpyCH4V	TGCA	6 cut(s)	180, 300, 531, 652, 806, 884
HpyF10VI	GCNNNNNNNGC	2 cut(s)	156, 881
HpyF3I	CTNAG	1 cut(s)	776
HpySE526I	ACGT	2 cut(s)	258, 678
Hsp92II	CATG	4 cut(s)	505, 582, 844, 905
Kpn2I	TCCGGA	1 cut(s)	327
Kzo9I	GATC	5 cut(s)	228, 330, 433, 630, 733
LmnI	GCTCC	6 cut(s)	10, 39, 67, 155, 360, 582
Lsp1109I	GCAGC	1 cut(s)	497
LweI	GCATC	1 cut(s)	457
MaeI	CTAG	1 cut(s)	672
MaeII	ACGT	2 cut(s)	258, 678
MaeIII	GTNAC	4 cut(s)	206, 685, 811, 836
MalI	GATC	5 cut(s)	230, 332, 435, 632, 735
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	5 cut(s)	228, 330, 433, 630, 733
MboII	GAAGA	9 cut(s)	8, 277, 374, 377, 388, 413, 416, 502, 674
MfeI	CAATTG	1 cut(s)	807
MflI	RGATCY	2 cut(s)	330, 733
MhlI	GDGCHC	2 cut(s)	36, 357
MluCI	AATT	5 cut(s)	551, 611, 634, 643, 807
MlyI	GAGTC	1 cut(s)	438
MmeI	TCCRAC	3 cut(s)	140, 358, 730
MroI	TCCGGA	1 cut(s)	327
MseI	TTAA	2 cut(s)	702, 729
MspI	CCGG	5 cut(s)	224, 238, 303, 328, 346
MspR9I	CCNGG	3 cut(s)	101, 304, 347
MunI	CAATTG	1 cut(s)	807
Mva1269I	GAATGC	1 cut(s)	602
MvaI	CCWGG	1 cut(s)	101
MwoI	GCNNNNNNNGC	2 cut(s)	156, 881
NciI	CCSGG	2 cut(s)	304, 347
NdeI	CATATG	1 cut(s)	134
NdeII	GATC	5 cut(s)	228, 330, 433, 630, 733
NheI	GCTAGC	1 cut(s)	671
NlaIII	CATG	4 cut(s)	505, 582, 844, 905
NlaIV	GGNNCC	3 cut(s)	6, 151, 332
NmuCI	GTSAC	3 cut(s)	685, 811, 836
NspI	RCATGY	1 cut(s)	844
PceI	AGGCCT	1 cut(s)	99
PciI	ACATGT	1 cut(s)	840
PcsI	WCGNNNNNNNCGW	2 cut(s)	27, 468
PctI	GAATGC	1 cut(s)	602
PfeI	GAWTC	6 cut(s)	83, 324, 370, 410, 438, 515
PflMI	CCANNNNNTGG	1 cut(s)	100
PkrI	GCNGC	4 cut(s)	69, 141, 487, 500
PleI	GAGTC	1 cut(s)	438
PpsI	GAGTC	1 cut(s)	438
PpuMI	RGGWCCY	1 cut(s)	217
PscI	ACATGT	1 cut(s)	840
Psp124BI	GAGCTC	2 cut(s)	36, 357
Psp5II	RGGWCCY	1 cut(s)	217
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	3 cut(s)	6, 151, 332
PspPI	GGNCC	2 cut(s)	23, 217
PspPPI	RGGWCCY	1 cut(s)	217
PsuI	RGATCY	2 cut(s)	330, 733
RsaI	GTAC	2 cut(s)	236, 900
RsaNI	GTAC	2 cut(s)	235, 899
SacI	GAGCTC	2 cut(s)	36, 357
SaqAI	TTAA	2 cut(s)	702, 729
SatI	GCNGC	4 cut(s)	68, 140, 486, 499
Sau3AI	GATC	5 cut(s)	228, 330, 433, 630, 733
Sau96I	GGNCC	2 cut(s)	23, 217
SchI	GAGTC	1 cut(s)	438
ScrFI	CCNGG	3 cut(s)	101, 304, 347
SduI	GDGCHC	2 cut(s)	36, 357
SfaNI	GCATC	1 cut(s)	457
SfcI	CTRYAG	1 cut(s)	781
SinI	GGWCC	2 cut(s)	23, 217
Sse9I	AATT	5 cut(s)	551, 611, 634, 643, 807
SseBI	AGGCCT	1 cut(s)	99
SsiI	CCGC	7 cut(s)	60, 65, 68, 139, 278, 286, 498
SspI	AATATT	1 cut(s)	861
SspMI	CTAG	1 cut(s)	672
SstI	GAGCTC	2 cut(s)	36, 357
StuI	AGGCCT	1 cut(s)	99
StyD4I	CCNGG	3 cut(s)	99, 302, 345
StyI	CCWWGG	1 cut(s)	94
TaiI	ACGT	2 cut(s)	261, 681
TaqI	TCGA	3 cut(s)	351, 436, 909
TaqII	GACCGA	1 cut(s)	11
TasI	AATT	5 cut(s)	551, 611, 634, 643, 807
TauI	GCSGC	3 cut(s)	70, 142, 501
TfiI	GAWTC	6 cut(s)	83, 324, 370, 410, 438, 515
Tru1I	TTAA	2 cut(s)	702, 729
Tru9I	TTAA	2 cut(s)	702, 729
TscAI	CASTG	1 cut(s)	420
TseFI	GTSAC	3 cut(s)	685, 811, 836
TseI	GCWGC	1 cut(s)	485
Tsp45I	GTSAC	3 cut(s)	685, 811, 836
TspGWI	ACGGA	1 cut(s)	508
TspRI	CASTG	1 cut(s)	420
Van91I	CCANNNNNTGG	1 cut(s)	100
VpaK11BI	GGWCC	2 cut(s)	23, 217
XapI	RAATTY	1 cut(s)	551
XceI	RCATGY	1 cut(s)	844
XspI	CTAG	1 cut(s)	672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.