Rh3BG259600

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0015775
Physical Location & Seq
Reverse (-)
25173503 .. 25173787
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG259600.1

Sequence Viewer

Length: 285 bp
ATGGCTCCTCCCAGTCTTCTCGGTCCTCCCGAGCTCCACAAACCCTCACCCACCACCACCGCTCCGCCGCCACCCGAACCCGAATCCAAACCCCAAGGCTTGGAACTGGAAAGTCCAACAAGGAAGGCTTCCATATGGCGGCGTTTTTGCTCCACAAGCACCACCCCAAAACTCGCTTGCAACCTCGCGTCCTTCTCCGAGTTCGGTTATTTCAAGGACCTGCCGGAGATCGTGTACCGGCTTCTGGAGGGCGAGGATGTGAGGAAGAAACAGAAGGCGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

94

Amino Acids

10.45

Weight (kDa)

7.77

Isoelectric Point (pI)

69.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 228
AccB7I CCANNNNNTGG 1 cut(s) 100
AccBSI CCGCTC 1 cut(s) 62
AccII CGCG 1 cut(s) 188
AciI CCGC 5 cut(s) 60, 65, 68, 139, 278
AfaI GTAC 1 cut(s) 236
AfiI CCNNNNNNNGG 3 cut(s) 100, 138, 244
AgsI TTSAA 1 cut(s) 214
AluBI AGCT 1 cut(s) 34
AluI AGCT 1 cut(s) 34
Alw21I GWGCWC 1 cut(s) 36
Ama87I CYCGRG 1 cut(s) 29
AspS9I GGNCC 2 cut(s) 23, 217
AsuHPI GGTGA 1 cut(s) 39
AvaI CYCGRG 1 cut(s) 29
AvaII GGWCC 2 cut(s) 23, 217
BanII GRGCYC 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 36
BfuAI ACCTGC 1 cut(s) 228
BisI GCNGC 2 cut(s) 68, 140
BlsI GCNGC 2 cut(s) 69, 141
Bme18I GGWCC 2 cut(s) 23, 217
BmeT110I CYCGRG 1 cut(s) 29
BmgT120I GGNCC 2 cut(s) 23, 217
BmiI GGNNCC 1 cut(s) 6
BmrI ACTGGG 1 cut(s) 6
BmuI ACTGGG 1 cut(s) 6
BpiI GAAGAC 1 cut(s) 8
BpmI CTGGAG 1 cut(s) 266
BsaJI CCNNGG 1 cut(s) 94
BsaXI ACNNNNNCTCC 4 cut(s) 46, 76, 218, 248
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 138, 244
Bse118I RCCGGY 1 cut(s) 237
Bse1I ACTGG 2 cut(s) 12, 111
BseDI CCNNGG 1 cut(s) 94
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 3 cut(s) 100, 138, 244
BseNI ACTGG 2 cut(s) 12, 111
Bsh1236I CGCG 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 36
BsiHKCI CYCGRG 1 cut(s) 29
BsiSI CCGG 2 cut(s) 224, 238
BslI CCNNNNNNNGG 3 cut(s) 100, 138, 244
BsoBI CYCGRG 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 1 cut(s) 228
BspACI CCGC 5 cut(s) 60, 65, 68, 139, 278
BspFNI CGCG 1 cut(s) 188
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 228
BsrBI CCGCTC 1 cut(s) 62
BsrFI RCCGGY 1 cut(s) 237
BsrI ACTGG 2 cut(s) 12, 111
BssAI RCCGGY 1 cut(s) 237
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 1 cut(s) 228
BssT1I CCWWGG 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 178
BstF5I GGATG 1 cut(s) 262
BstFNI CGCG 1 cut(s) 188
BstKTI GATC 1 cut(s) 231
BstMBI GATC 1 cut(s) 228
BstMWI GCNNNNNNNGC 1 cut(s) 156
BstUI CGCG 1 cut(s) 188
BstV2I GAAGAC 1 cut(s) 8
BtsCI GGATG 1 cut(s) 262
BveI ACCTGC 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 178
Cfr10I RCCGGY 1 cut(s) 237
Cfr13I GGNCC 2 cut(s) 23, 217
CseI GACGC 1 cut(s) 177
Csp6I GTAC 1 cut(s) 235
CviJI RGCY 5 cut(s) 5, 34, 99, 128, 241
CviKI_1 RGCY 5 cut(s) 5, 34, 99, 128, 241
CviQI GTAC 1 cut(s) 235
DpnI GATC 1 cut(s) 230
DpnII GATC 1 cut(s) 228
EciI GGCGGA 1 cut(s) 54
Ecl136II GAGCTC 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 94
Eco24I GRGCYC 1 cut(s) 36
Eco47I GGWCC 2 cut(s) 23, 217
Eco53kI GAGCTC 1 cut(s) 34
Eco88I CYCGRG 1 cut(s) 29
EcoICRI GAGCTC 1 cut(s) 34
EcoO109I RGGNCCY 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 94
EcoT38I GRGCYC 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 94
FaiI YATR 2 cut(s) 134, 136
FalI AAGNNNNNCTT 2 cut(s) 112, 144
FauNDI CATATG 1 cut(s) 134
Fnu4HI GCNGC 2 cut(s) 68, 140
FokI GGATG 1 cut(s) 269
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 2 cut(s) 68, 140
GluI GCNGC 2 cut(s) 68, 140
GsuI CTGGAG 1 cut(s) 266
HapII CCGG 2 cut(s) 224, 238
HgaI GACGC 1 cut(s) 177
HinfI GANTC 1 cut(s) 83
HpaII CCGG 2 cut(s) 224, 238
HphI GGTGA 1 cut(s) 39
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 2 cut(s) 29, 245
Hpy8I GTNNAC 1 cut(s) 235
HpyAV CCTTC 3 cut(s) 118, 202, 268
HpyCH4V TGCA 1 cut(s) 180
HpyF10VI GCNNNNNNNGC 1 cut(s) 156
Kzo9I GATC 1 cut(s) 228
LmnI GCTCC 4 cut(s) 10, 39, 67, 155
LpnPI CCDG 6 cut(s) 25, 92, 230, 233, 237, 251
MalI GATC 1 cut(s) 230
MbiI CCGCTC 1 cut(s) 62
MboI GATC 1 cut(s) 228
MboII GAAGA 2 cut(s) 8, 277
MhlI GDGCHC 1 cut(s) 36
MmeI TCCRAC 1 cut(s) 140
MnlI CCTC 7 cut(s) 18, 36, 55, 194, 241, 247, 255
MspI CCGG 2 cut(s) 224, 238
MvnI CGCG 1 cut(s) 188
MwoI GCNNNNNNNGC 1 cut(s) 156
NdeI CATATG 1 cut(s) 134
NdeII GATC 1 cut(s) 228
NlaIV GGNNCC 1 cut(s) 6
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PfeI GAWTC 1 cut(s) 83
PflMI CCANNNNNTGG 1 cut(s) 100
PkrI GCNGC 2 cut(s) 69, 141
PpuMI RGGWCCY 1 cut(s) 217
Psp124BI GAGCTC 1 cut(s) 36
Psp5II RGGWCCY 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 23, 217
PspPPI RGGWCCY 1 cut(s) 217
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
SacI GAGCTC 1 cut(s) 36
SatI GCNGC 2 cut(s) 68, 140
Sau3AI GATC 1 cut(s) 228
Sau96I GGNCC 2 cut(s) 23, 217
SduI GDGCHC 1 cut(s) 36
SetI ASST 3 cut(s) 36, 186, 222
SinI GGWCC 2 cut(s) 23, 217
SsiI CCGC 5 cut(s) 60, 65, 68, 139, 278
SstI GAGCTC 1 cut(s) 36
StyI CCWWGG 1 cut(s) 94
TaqII GACCGA 1 cut(s) 11
TauI GCSGC 2 cut(s) 70, 142
TfiI GAWTC 1 cut(s) 83
Van91I CCANNNNNTGG 1 cut(s) 100
VpaK11BI GGWCC 2 cut(s) 23, 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.