Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004284.1

Orthogroup ID

OG0015775

Physical Location & Seq

Genomic Coordinates Forward (+)

8164 .. 14075

Gene Structure 5912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004284.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atggctcctcccagtcttctcggtcctcccgagctccacaaatcctcacccaccaccaccgctccgccgccacccgaacccgaatccaaaccccaaggcctggaactggaaagtccgacaaggaaggcttccatatggctgcgttttggctccacaagcaccaccccaaaactcgcttgcaacctcgcgtccttctccgagttcggttacttcaaggacctgccggagatcgtgtaccggcttctggagagcgaggacgtgaggaagaaacagaaggcggagtggcgggagaggaaatgcaccgggaggcaggaagcgacgggaatccggatccgacggcgaaaccgggtcgagctccgagaagaagagaatcagaagaaagagaggaaaatggagagtgaagaagacgattcagtgagcgaggttctcagagatcgattcagactctccaccatctctatcgccgatgccgaagatagatggcaaaagttcagtgacatgtatcttgacaaggaaatattagacttccttgccaagtatgcatacgagtttctggtacatggtgtcgatgtggaagggaaaaaattcgagctagctgctactgcttcggtcctccaagccctaatcaaaggcggcttcaaattctgccctctaattcaagccgccacaatccccttactatgcagcttcaaggacgtcggcgccgccaccggctcaggcaaaaccctcgccttagtgatcccactcgtcgagatcctccaccgcacttctaccctcaccaggtctgattcaaactcaaagccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003727 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008187 GO:0008266 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

268

Amino Acids

30.2

Weight (kDa)

8.25

Isoelectric Point (pI)

53.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015775)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000029583 RLG00000029632 RLG00000031683
rosa_multiflora	Rmu_sc0000670.1_g000015 Rmu_sc0004284.1_g000002
rosa_roxburghii	Rroxscaffold_1G00004070 Rroxscaffold_3G00225670
rosa_samantha	Rh2BG087600 Rh2BG143500 Rh2BG172700 Rh3BG259600 Rh4DG167300 Rh5BG514500 Rh5BG535900 Rh5CG538100 Rh6AG162500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	699
Acc36I	ACCTGC	1 cut(s)	228
AccB1I	GGYRCC	1 cut(s)	701
AccB7I	CCANNNNNTGG	1 cut(s)	100
AccBSI	CCGCTC	1 cut(s)	62
AccII	CGCG	1 cut(s)	188
AccIII	TCCGGA	1 cut(s)	327
AciI	CCGC	9 cut(s)	60, 65, 68, 278, 286, 633, 663, 705, 763
AclWI	GGATC	4 cut(s)	325, 338, 733, 748
AcsI	RAATTY	2 cut(s)	584, 641
AcyI	GRCGYC	2 cut(s)	696, 702
AfaI	GTAC	2 cut(s)	236, 558
AfiI	CCNNNNNNNGG	4 cut(s)	100, 106, 244, 780
AflIII	ACRYGT	1 cut(s)	498
AgsI	TTSAA	5 cut(s)	214, 640, 659, 691, 792
AjiI	CACGTC	1 cut(s)	259
AjnI	CCWGG	2 cut(s)	99, 779
AluBI	AGCT	5 cut(s)	34, 355, 592, 596, 687
AluI	AGCT	5 cut(s)	34, 355, 592, 596, 687
Alw21I	GWGCWC	2 cut(s)	36, 357
AlwI	GGATC	4 cut(s)	325, 338, 733, 748
Ama87I	CYCGRG	1 cut(s)	29
Aor13HI	TCCGGA	1 cut(s)	327
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	3 cut(s)	139, 596, 684
ApoI	RAATTY	2 cut(s)	584, 641
Asp700I	GAANNNNTTC	1 cut(s)	584
AspLEI	GCGC	1 cut(s)	704
AspS9I	GGNCC	3 cut(s)	23, 217, 610
AsuC2I	CCSGG	2 cut(s)	304, 347
AsuHPI	GGTGA	2 cut(s)	39, 769
AsuNHI	GCTAGC	1 cut(s)	592
AvaI	CYCGRG	1 cut(s)	29
AvaII	GGWCC	3 cut(s)	23, 217, 610
BamHI	GGATCC	1 cut(s)	330
BanI	GGYRCC	1 cut(s)	701
BanII	GRGCYC	2 cut(s)	36, 357
BbsI	GAAGAC	2 cut(s)	8, 411
Bbv12I	GWGCWC	2 cut(s)	36, 357
BbvI	GCAGC	3 cut(s)	126, 583, 696
BccI	CCATC	2 cut(s)	461, 474
BceAI	ACGGC	1 cut(s)	353
BcgI	CGANNNNNNTGC	4 cut(s)	578, 612, 709, 743
BciT130I	CCWGG	2 cut(s)	101, 781
BcnI	CCSGG	2 cut(s)	304, 347
BfaI	CTAG	1 cut(s)	593
BfoI	RGCGCY	1 cut(s)	705
BfuAI	ACCTGC	1 cut(s)	228
BisI	GCNGC	7 cut(s)	68, 140, 597, 634, 663, 685, 705
BlsI	GCNGC	7 cut(s)	69, 141, 598, 635, 664, 686, 706
Bme1390I	CCNGG	4 cut(s)	101, 304, 347, 781
Bme18I	GGWCC	3 cut(s)	23, 217, 610
BmeT110I	CYCGRG	1 cut(s)	29
BmgBI	CACGTC	1 cut(s)	259
BmgT120I	GGNCC	3 cut(s)	23, 217, 610
BmiI	GGNNCC	4 cut(s)	6, 151, 332, 703
BmrFI	CCNGG	4 cut(s)	101, 304, 347, 781
BmrI	ACTGGG	1 cut(s)	6
BmsI	GCATC	1 cut(s)	457
BmtI	GCTAGC	1 cut(s)	596
BmuI	ACTGGG	1 cut(s)	6
BpiI	GAAGAC	2 cut(s)	8, 411
BpmI	CTGGAG	1 cut(s)	266
Bpu10I	CCTNAGC	1 cut(s)	715
BpuMI	CCSGG	2 cut(s)	304, 347
Bsa29I	ATCGAT	1 cut(s)	436
BsaHI	GRCGYC	2 cut(s)	696, 702
BsaJI	CCNNGG	1 cut(s)	94
BsaWI	WCCGGW	1 cut(s)	327
BsaXI	ACNNNNNCTCC	4 cut(s)	46, 76, 218, 248
Bsc4I	CCNNNNNNNGG	4 cut(s)	100, 106, 244, 780
Bse118I	RCCGGY	2 cut(s)	237, 710
Bse1I	ACTGG	2 cut(s)	12, 111
BseAI	TCCGGA	1 cut(s)	327
BseBI	CCWGG	2 cut(s)	101, 781
BseCI	ATCGAT	1 cut(s)	436
BseDI	CCNNGG	1 cut(s)	94
BseLI	CCNNNNNNNGG	4 cut(s)	100, 106, 244, 780
BseMII	CTCAG	2 cut(s)	442, 729
BseNI	ACTGG	2 cut(s)	12, 111
BseXI	GCAGC	3 cut(s)	126, 583, 696
Bsh1236I	CGCG	1 cut(s)	188
BshFI	GGCC	1 cut(s)	99
BshNI	GGYRCC	1 cut(s)	701
BshVI	ATCGAT	1 cut(s)	436
BsiHKAI	GWGCWC	2 cut(s)	36, 357
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	6 cut(s)	224, 238, 303, 328, 346, 711
BslI	CCNNNNNNNGG	4 cut(s)	100, 106, 244, 780
BsnI	GGCC	1 cut(s)	99
BsoBI	CYCGRG	1 cut(s)	29
Bsp1286I	GDGCHC	2 cut(s)	36, 357
Bsp13I	TCCGGA	1 cut(s)	327
Bsp143I	GATC	5 cut(s)	228, 330, 433, 738, 753
BspACI	CCGC	9 cut(s)	60, 65, 68, 278, 286, 633, 663, 705, 763
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	2 cut(s)	441, 728
BspDI	ATCGAT	1 cut(s)	436
BspEI	TCCGGA	1 cut(s)	327
BspFNI	CGCG	1 cut(s)	188
BspLI	GGNNCC	4 cut(s)	6, 151, 332, 703
BspMI	ACCTGC	1 cut(s)	228
BspOI	GCTAGC	1 cut(s)	596
BspPI	GGATC	4 cut(s)	325, 338, 733, 748
BspT107I	GGYRCC	1 cut(s)	701
BsrBI	CCGCTC	1 cut(s)	62
BsrFI	RCCGGY	2 cut(s)	237, 710
BsrI	ACTGG	2 cut(s)	12, 111
BssAI	RCCGGY	2 cut(s)	237, 710
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	5 cut(s)	228, 330, 433, 738, 753
BssNI	GRCGYC	2 cut(s)	696, 702
BssT1I	CCWWGG	1 cut(s)	94
Bst2UI	CCWGG	2 cut(s)	101, 781
Bst6I	CTCTTC	1 cut(s)	360
BstACI	GRCGYC	2 cut(s)	696, 702
BstC8I	GCNNGC	2 cut(s)	178, 594
BstDEI	CTNAG	3 cut(s)	428, 715, 733
BstFNI	CGCG	1 cut(s)	188
BstH2I	RGCGCY	1 cut(s)	705
BstHHI	GCGC	1 cut(s)	704
BstKTI	GATC	5 cut(s)	231, 333, 436, 741, 756
BstMBI	GATC	5 cut(s)	228, 330, 433, 738, 753
BstMWI	GCNNNNNNNGC	3 cut(s)	156, 539, 602
BstNI	CCWGG	2 cut(s)	101, 781
BstNSI	RCATGY	1 cut(s)	502
BstSCI	CCNGG	4 cut(s)	99, 302, 345, 779
BstUI	CGCG	1 cut(s)	188
BstV1I	GCAGC	3 cut(s)	126, 583, 696
BstV2I	GAAGAC	2 cut(s)	8, 411
BstX2I	RGATCY	2 cut(s)	330, 753
BstYI	RGATCY	2 cut(s)	330, 753
Bsu15I	ATCGAT	1 cut(s)	436
BsuRI	GGCC	1 cut(s)	99
BsuTUI	ATCGAT	1 cut(s)	436
BtrI	CACGTC	1 cut(s)	259
BtsIMutI	CAGTG	2 cut(s)	420, 499
BveI	ACCTGC	1 cut(s)	228
Cac8I	GCNNGC	2 cut(s)	178, 594
CfoI	GCGC	1 cut(s)	704
Cfr10I	RCCGGY	2 cut(s)	237, 710
Cfr13I	GGNCC	3 cut(s)	23, 217, 610
ClaI	ATCGAT	1 cut(s)	436
CseI	GACGC	1 cut(s)	177
CsiI	ACCWGGT	1 cut(s)	779
Csp6I	GTAC	2 cut(s)	235, 557
CviAII	CATG	2 cut(s)	499, 560
CviQI	GTAC	2 cut(s)	235, 557
DdeI	CTNAG	3 cut(s)	428, 715, 733
DinI	GGCGCC	1 cut(s)	703
DpnI	GATC	5 cut(s)	230, 332, 435, 740, 755
DpnII	GATC	5 cut(s)	228, 330, 433, 738, 753
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
EciI	GGCGGA	2 cut(s)	54, 293
Ecl136II	GAGCTC	2 cut(s)	34, 355
Eco130I	CCWWGG	1 cut(s)	94
Eco147I	AGGCCT	1 cut(s)	99
Eco24I	GRGCYC	2 cut(s)	36, 357
Eco47I	GGWCC	3 cut(s)	23, 217, 610
Eco53kI	GAGCTC	2 cut(s)	34, 355
Eco88I	CYCGRG	1 cut(s)	29
EcoICRI	GAGCTC	2 cut(s)	34, 355
EcoO109I	RGGNCCY	1 cut(s)	217
EcoRII	CCWGG	2 cut(s)	99, 779
EcoT14I	CCWWGG	1 cut(s)	94
EcoT22I	ATGCAT	1 cut(s)	544
EcoT38I	GRGCYC	2 cut(s)	36, 357
EgeI	GGCGCC	1 cut(s)	703
EheI	GGCGCC	1 cut(s)	703
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	2 cut(s)	502, 563
FaiI	YATR	7 cut(s)	134, 136, 500, 540, 544, 561, 682
FalI	AAGNNNNNCTT	2 cut(s)	112, 144
FatI	CATG	2 cut(s)	498, 559
FauI	CCCGC	1 cut(s)	279
FauNDI	CATATG	1 cut(s)	134
Fnu4HI	GCNGC	7 cut(s)	68, 140, 597, 634, 663, 685, 705
FriOI	GRGCYC	2 cut(s)	36, 357
Fsp4HI	GCNGC	7 cut(s)	68, 140, 597, 634, 663, 685, 705
FspBI	CTAG	1 cut(s)	593
GlaI	GCGC	1 cut(s)	703
GluI	GCNGC	7 cut(s)	68, 140, 597, 634, 663, 685, 705
GsuI	CTGGAG	1 cut(s)	266
HaeII	RGCGCY	1 cut(s)	705
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	6 cut(s)	224, 238, 303, 328, 346, 711
HgaI	GACGC	1 cut(s)	177
HhaI	GCGC	1 cut(s)	704
Hin1I	GRCGYC	2 cut(s)	696, 702
Hin1II	CATG	2 cut(s)	502, 563
Hin6I	GCGC	1 cut(s)	702
HinP1I	GCGC	1 cut(s)	702
HinfI	GANTC	7 cut(s)	83, 324, 370, 410, 438, 444, 788
HpaII	CCGG	6 cut(s)	224, 238, 303, 328, 346, 711
HphI	GGTGA	2 cut(s)	39, 769
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	8 cut(s)	117, 199, 335, 359, 375, 431, 443, 787
Hpy188III	TCNNGA	5 cut(s)	29, 245, 328, 506, 751
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	4 cut(s)	322, 339, 701, 752
HpyAV	CCTTC	4 cut(s)	118, 202, 268, 569
HpyCH4IV	ACGT	2 cut(s)	258, 696
HpyCH4V	TGCA	4 cut(s)	180, 300, 542, 684
HpyF10VI	GCNNNNNNNGC	3 cut(s)	156, 539, 602
HpyF3I	CTNAG	3 cut(s)	428, 715, 733
HpySE526I	ACGT	2 cut(s)	258, 696
Hsp92I	GRCGYC	2 cut(s)	696, 702
Hsp92II	CATG	2 cut(s)	502, 563
HspAI	GCGC	1 cut(s)	702
KasI	GGCGCC	1 cut(s)	701
Kpn2I	TCCGGA	1 cut(s)	327
Kzo9I	GATC	5 cut(s)	228, 330, 433, 738, 753
LmnI	GCTCC	5 cut(s)	10, 39, 67, 155, 360
Lsp1109I	GCAGC	3 cut(s)	126, 583, 696
LweI	GCATC	1 cut(s)	457
MabI	ACCWGGT	1 cut(s)	779
MaeI	CTAG	1 cut(s)	593
MaeII	ACGT	2 cut(s)	258, 696
MaeIII	GTNAC	2 cut(s)	206, 494
MalI	GATC	5 cut(s)	230, 332, 435, 740, 755
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	5 cut(s)	228, 330, 433, 738, 753
MboII	GAAGA	8 cut(s)	8, 277, 374, 377, 388, 413, 416, 485
MflI	RGATCY	2 cut(s)	330, 753
MhlI	GDGCHC	2 cut(s)	36, 357
MluCI	AATT	3 cut(s)	584, 641, 654
Mly113I	GGCGCC	1 cut(s)	702
MlyI	GAGTC	1 cut(s)	438
MmeI	TCCRAC	2 cut(s)	140, 358
Mph1103I	ATGCAT	1 cut(s)	544
MroI	TCCGGA	1 cut(s)	327
MroXI	GAANNNNTTC	1 cut(s)	584
MspI	CCGG	6 cut(s)	224, 238, 303, 328, 346, 711
MspR9I	CCNGG	4 cut(s)	101, 304, 347, 781
MvaI	CCWGG	2 cut(s)	101, 781
MvnI	CGCG	1 cut(s)	188
MwoI	GCNNNNNNNGC	3 cut(s)	156, 539, 602
NarI	GGCGCC	1 cut(s)	702
NciI	CCSGG	2 cut(s)	304, 347
NdeI	CATATG	1 cut(s)	134
NdeII	GATC	5 cut(s)	228, 330, 433, 738, 753
NheI	GCTAGC	1 cut(s)	592
NlaIII	CATG	2 cut(s)	502, 563
NlaIV	GGNNCC	4 cut(s)	6, 151, 332, 703
NmuCI	GTSAC	1 cut(s)	494
NsiI	ATGCAT	1 cut(s)	544
NspI	RCATGY	1 cut(s)	502
PceI	AGGCCT	1 cut(s)	99
PciI	ACATGT	1 cut(s)	498
PcsI	WCGNNNNNNNCGW	2 cut(s)	27, 468
PdmI	GAANNNNTTC	1 cut(s)	584
PfeI	GAWTC	6 cut(s)	83, 324, 370, 410, 438, 788
PflMI	CCANNNNNTGG	1 cut(s)	100
PkrI	GCNGC	7 cut(s)	69, 141, 598, 635, 664, 686, 706
PleI	GAGTC	1 cut(s)	438
PluTI	GGCGCC	1 cut(s)	705
PpsI	GAGTC	1 cut(s)	438
PpuMI	RGGWCCY	1 cut(s)	217
PscI	ACATGT	1 cut(s)	498
Psp124BI	GAGCTC	2 cut(s)	36, 357
Psp5II	RGGWCCY	1 cut(s)	217
Psp6I	CCWGG	2 cut(s)	99, 779
PspGI	CCWGG	2 cut(s)	99, 779
PspN4I	GGNNCC	4 cut(s)	6, 151, 332, 703
PspPI	GGNCC	3 cut(s)	23, 217, 610
PspPPI	RGGWCCY	1 cut(s)	217
PsuI	RGATCY	2 cut(s)	330, 753
RsaI	GTAC	2 cut(s)	236, 558
RsaNI	GTAC	2 cut(s)	235, 557
SacI	GAGCTC	2 cut(s)	36, 357
SatI	GCNGC	7 cut(s)	68, 140, 597, 634, 663, 685, 705
Sau3AI	GATC	5 cut(s)	228, 330, 433, 738, 753
Sau96I	GGNCC	3 cut(s)	23, 217, 610
SchI	GAGTC	1 cut(s)	438
ScrFI	CCNGG	4 cut(s)	101, 304, 347, 781
SduI	GDGCHC	2 cut(s)	36, 357
SexAI	ACCWGGT	1 cut(s)	779
SfaNI	GCATC	1 cut(s)	457
SfoI	GGCGCC	1 cut(s)	703
SinI	GGWCC	3 cut(s)	23, 217, 610
Sse9I	AATT	3 cut(s)	584, 641, 654
SseBI	AGGCCT	1 cut(s)	99
SsiI	CCGC	9 cut(s)	60, 65, 68, 278, 286, 633, 663, 705, 763
SspDI	GGCGCC	1 cut(s)	701
SspI	AATATT	1 cut(s)	519
SspMI	CTAG	1 cut(s)	593
SstI	GAGCTC	2 cut(s)	36, 357
StuI	AGGCCT	1 cut(s)	99
StyD4I	CCNGG	4 cut(s)	99, 302, 345, 779
StyI	CCWWGG	1 cut(s)	94
TaiI	ACGT	2 cut(s)	261, 699
TaqI	TCGA	5 cut(s)	351, 436, 567, 588, 750
TaqII	GACCGA	2 cut(s)	11, 598
TasI	AATT	3 cut(s)	584, 641, 654
TauI	GCSGC	4 cut(s)	70, 636, 665, 707
TfiI	GAWTC	6 cut(s)	83, 324, 370, 410, 438, 788
TscAI	CASTG	2 cut(s)	420, 499
TseFI	GTSAC	1 cut(s)	494
TseI	GCWGC	3 cut(s)	139, 596, 684
Tsp45I	GTSAC	1 cut(s)	494
TspRI	CASTG	2 cut(s)	420, 499
Van91I	CCANNNNNTGG	1 cut(s)	100
VpaK11BI	GGWCC	3 cut(s)	23, 217, 610
XapI	RAATTY	2 cut(s)	584, 641
XceI	RCATGY	1 cut(s)	502
XmnI	GAANNNNTTC	1 cut(s)	584
XspI	CTAG	1 cut(s)	593
ZraI	GACGTC	1 cut(s)	697
Zsp2I	ATGCAT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.