Rh5BG535900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0015775
Physical Location & Seq
Reverse (-)
84616217 .. 84618038
1822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG535900.1

Sequence Viewer

Length: 363 bp
ATGAAATTGGAACGGGGATTACTTTTGTTTTTGTGTATTGATTTAATAGAAATGTGGTGGTGTGTTTTGATTGATTTCAGTTTTGGGTTGTTTTTGTTTCTTCAAATTGCATCTTGGATCTTTGATCTGGAAAGAGGAAGAACGAAGAACAGAGAGAGGGAGAGATTTGGATTGGCGAGTGGGGCAATTGGACCCCGACACCAACTAGCGCCGGAATCCTTTAGTCTCTACGATCTGTATAATCCCTACCTCTACCGTCACCAACTGCCACCATCAGGACTACCCTGTCCCCGTCGCACCAACTTCTCCTTATCCGCGGAAGGGTTAAGGGTTTTATGGATAATTTCAAGGAATCAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

14.09

Weight (kDa)

8.98

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 285
AccII CGCG 1 cut(s) 317
AciI CCGC 2 cut(s) 315, 317
AclWI GGATC 1 cut(s) 125
AfiI CCNNNNNNNGG 2 cut(s) 275, 321
AgsI TTSAA 2 cut(s) 104, 348
Alw26I GTCTC 1 cut(s) 230
AlwI GGATC 1 cut(s) 125
AspLEI GCGC 1 cut(s) 211
AspS9I GGNCC 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 251
AvaII GGWCC 1 cut(s) 191
BccI CCATC 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 230
BfaI CTAG 1 cut(s) 206
BfoI RGCGCY 1 cut(s) 212
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 193
BmsI GCATC 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 315
Bsc4I CCNNNNNNNGG 2 cut(s) 275, 321
BseDI CCNNGG 1 cut(s) 315
BseLI CCNNNNNNNGG 2 cut(s) 275, 321
Bsh1236I CGCG 1 cut(s) 317
BsiSI CCGG 1 cut(s) 212
BslFI GGGAC 1 cut(s) 273
BslI CCNNNNNNNGG 2 cut(s) 275, 321
BsmAI GTCTC 1 cut(s) 230
BsmFI GGGAC 1 cut(s) 273
Bsp143I GATC 3 cut(s) 117, 124, 232
BspACI CCGC 2 cut(s) 315, 317
BspFNI CGCG 1 cut(s) 317
BspHI TCATGA 1 cut(s) 359
BspLI GGNNCC 1 cut(s) 193
BspPI GGATC 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 315
BssMI GATC 3 cut(s) 117, 124, 232
Bst4CI ACNGT 1 cut(s) 257
BstDSI CCRYGG 1 cut(s) 315
BstFNI CGCG 1 cut(s) 317
BstH2I RGCGCY 1 cut(s) 212
BstHHI GCGC 1 cut(s) 211
BstKTI GATC 3 cut(s) 120, 127, 235
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 3 cut(s) 117, 124, 232
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstUI CGCG 1 cut(s) 317
BstX2I RGATCY 1 cut(s) 117
BstYI RGATCY 1 cut(s) 117
BtgI CCRYGG 1 cut(s) 315
CciI TCATGA 1 cut(s) 359
CfoI GCGC 1 cut(s) 211
Cfr13I GGNCC 1 cut(s) 191
Cfr42I CCGCGG 1 cut(s) 318
CviAII CATG 1 cut(s) 360
DpnI GATC 3 cut(s) 119, 126, 234
DpnII GATC 3 cut(s) 117, 124, 232
DrdI GACNNNNNNGTC 1 cut(s) 285
DseDI GACNNNNNNGTC 1 cut(s) 285
Eco47I GGWCC 1 cut(s) 191
FaeI CATG 1 cut(s) 363
FaiI YATR 3 cut(s) 240, 337, 361
FaqI GGGAC 1 cut(s) 273
FatI CATG 1 cut(s) 359
FspBI CTAG 1 cut(s) 206
GlaI GCGC 1 cut(s) 210
HaeII RGCGCY 1 cut(s) 212
HapII CCGG 1 cut(s) 212
HhaI GCGC 1 cut(s) 211
Hin1II CATG 1 cut(s) 363
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HinfI GANTC 2 cut(s) 215, 352
HpaII CCGG 1 cut(s) 212
HphI GGTGA 1 cut(s) 251
Hpy188III TCNNGA 3 cut(s) 128, 276, 360
Hpy99I CGWCG 1 cut(s) 297
HpyAV CCTTC 1 cut(s) 314
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4V TGCA 1 cut(s) 110
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
Hsp92II CATG 1 cut(s) 363
HspAI GCGC 1 cut(s) 209
KspI CCGCGG 1 cut(s) 318
Kzo9I GATC 3 cut(s) 117, 124, 232
LpnPI CCDG 4 cut(s) 113, 225, 261, 298
LweI GCATC 1 cut(s) 119
MaeI CTAG 1 cut(s) 206
MaeIII GTNAC 1 cut(s) 257
MalI GATC 3 cut(s) 119, 126, 234
MboI GATC 3 cut(s) 117, 124, 232
MboII GAAGA 3 cut(s) 92, 150, 157
MfeI CAATTG 1 cut(s) 186
MflI RGATCY 1 cut(s) 117
MluCI AATT 4 cut(s) 5, 105, 186, 342
MnlI CCTC 3 cut(s) 128, 150, 260
MseI TTAA 2 cut(s) 44, 326
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 1 cut(s) 212
MunI CAATTG 1 cut(s) 186
MvnI CGCG 1 cut(s) 317
MwoI GCNNNNNNNGC 1 cut(s) 182
NdeII GATC 3 cut(s) 117, 124, 232
NlaIII CATG 1 cut(s) 363
NlaIV GGNNCC 1 cut(s) 193
NmuCI GTSAC 1 cut(s) 257
PagI TCATGA 1 cut(s) 359
PfeI GAWTC 2 cut(s) 215, 352
PspN4I GGNNCC 1 cut(s) 193
PspPI GGNCC 1 cut(s) 191
PsrI GAACNNNNNNTAC 1 cut(s) 35
PsuI RGATCY 1 cut(s) 117
SacII CCGCGG 1 cut(s) 318
SaqAI TTAA 2 cut(s) 44, 326
Sau3AI GATC 3 cut(s) 117, 124, 232
Sau96I GGNCC 1 cut(s) 191
SetI ASST 1 cut(s) 252
SfaNI GCATC 1 cut(s) 119
Sfr303I CCGCGG 1 cut(s) 318
SgrBI CCGCGG 1 cut(s) 318
SinI GGWCC 1 cut(s) 191
Sse9I AATT 4 cut(s) 5, 105, 186, 342
SsiI CCGC 2 cut(s) 315, 317
SspMI CTAG 1 cut(s) 206
TaaI ACNGT 1 cut(s) 257
TasI AATT 4 cut(s) 5, 105, 186, 342
TfiI GAWTC 2 cut(s) 215, 352
Tru1I TTAA 2 cut(s) 44, 326
Tru9I TTAA 2 cut(s) 44, 326
TseFI GTSAC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 191
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.