Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001610

Physical Location & Seq

Genomic Coordinates Forward (+)

31246948 .. 31247618

Gene Structure 671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033709

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGACCACCGCAAAGAGATAATGAAGAGCGACTGCAAGAAGATCATGGACAGCATAAACGCAATGTGCTTTGAAAACCTAAACGATGAGCAGGTGCACTCGCTAGTGATGATGAGGGAAATCGCGCGCGGAGTTGTGGAGAATCGAGTCGGGAAGGTTTCCAATAGCGACGTCAAGAAGGCTCTGTCTTCCAGCATTGAGAAGATGGTGAGTGGAGTCGTTAGGGATGTGGTGAACATATTGGGGAGGATTTCGTGTGACGGATTAGGTGAGGAGGAGTTTCAGAAGCTGGTGAGGATGAAGGAGATTGCAATGGGGATTGTGTTGAAACGATCCACGGCCGTGGCCGCCTTGGGTGGTGAAGAACAAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

Metallophos

Protein Analysis

125

Amino Acids

13.74

Weight (kDa)

6.74

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001610)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720
malus_domestica	MD09G1191500.v1.1
prunus_persica	Prupe.3G047600_v2.0.a1
pyrus_communis	pycom09g10800
rosa_chinensis	RchiOBHm_Chr2g0143611
rosa_laevigata	RLG00000020051 RLG00000033709
rosa_multiflora	Rmu_co8237331.1_g000001 Rmu_sc0002412.1_g000001 Rmu_sc0004340.1_g000029 Rmu_sc0031780.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101600 Rroxscaffold_4G00304410
rosa_rugosa	Rorug02G0384400 Rorug02G0384400 Rorug02G0384400 Rorug02G0384400
rosa_samantha	Rh1BG199600 Rh1DG227400 Rh2AG436200 Rh2BG443800 Rh2CG422400 Rh2DG454200
rosa_wichuraiana	Rw2G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	82
AatII	GACGTC	1 cut(s)	174
Acc36I	ACCTGC	1 cut(s)	82
AccII	CGCG	3 cut(s)	125, 127, 129
AciI	CCGC	3 cut(s)	10, 129, 348
AclWI	GGATC	1 cut(s)	327
AcoI	YGGCCR	2 cut(s)	339, 345
AcyI	GRCGYC	1 cut(s)	171
AgsI	TTSAA	2 cut(s)	74, 328
AleI	CACNNNNGTG	1 cut(s)	341
AluBI	AGCT	1 cut(s)	289
AluI	AGCT	1 cut(s)	289
Alw21I	GWGCWC	1 cut(s)	99
Alw44I	GTGCAC	1 cut(s)	95
AlwI	GGATC	1 cut(s)	327
AlwNI	CAGNNNCTG	1 cut(s)	289
AoxI	GGCC	2 cut(s)	339, 345
ApaLI	GTGCAC	1 cut(s)	95
AspLEI	GCGC	2 cut(s)	127, 129
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	5 cut(s)	220, 244, 281, 304, 371
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	99
BccI	CCATC	1 cut(s)	199
BceAI	ACGGC	2 cut(s)	326, 354
BfaI	CTAG	1 cut(s)	104
BfuAI	ACCTGC	1 cut(s)	82
BisI	GCNGC	1 cut(s)	348
BlsI	GCNGC	1 cut(s)	349
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BpiI	GAAGAC	1 cut(s)	180
BsaHI	GRCGYC	1 cut(s)	171
BsaJI	CCNNGG	3 cut(s)	336, 342, 351
Bse3DI	GCAATG	2 cut(s)	69, 318
BseDI	CCNNGG	3 cut(s)	336, 342, 351
BseGI	GGATG	2 cut(s)	232, 303
BseMI	GCAATG	2 cut(s)	69, 318
BsePI	GCGCGC	1 cut(s)	125
BseRI	GAGGAG	2 cut(s)	287, 290
BseSI	GKGCMC	1 cut(s)	99
BseX3I	CGGCCG	1 cut(s)	339
Bsh1236I	CGCG	3 cut(s)	125, 127, 129
Bsh1285I	CGRYCG	1 cut(s)	342
BshFI	GGCC	2 cut(s)	341, 347
BsiEI	CGRYCG	1 cut(s)	342
BsiHKAI	GWGCWC	1 cut(s)	99
BsnI	GGCC	2 cut(s)	341, 347
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	2 cut(s)	42, 332
BspACI	CCGC	3 cut(s)	10, 129, 348
BspANI	GGCC	2 cut(s)	341, 347
BspFNI	CGCG	3 cut(s)	125, 127, 129
BspMI	ACCTGC	1 cut(s)	82
BspPI	GGATC	1 cut(s)	327
BspQI	GCTCTTC	1 cut(s)	20
BsrDI	GCAATG	2 cut(s)	69, 318
BssECI	CCNNGG	3 cut(s)	336, 342, 351
BssHII	GCGCGC	1 cut(s)	125
BssMI	GATC	2 cut(s)	42, 332
BssNI	GRCGYC	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	351
Bst6I	CTCTTC	1 cut(s)	20
BstACI	GRCGYC	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	127
BstDSI	CCRYGG	2 cut(s)	336, 342
BstF5I	GGATG	2 cut(s)	232, 303
BstFNI	CGCG	3 cut(s)	125, 127, 129
BstHHI	GCGC	2 cut(s)	127, 129
BstKTI	GATC	2 cut(s)	45, 335
BstMBI	GATC	2 cut(s)	42, 332
BstMCI	CGRYCG	1 cut(s)	342
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstSLI	GKGCMC	1 cut(s)	99
BstUI	CGCG	3 cut(s)	125, 127, 129
BstV2I	GAAGAC	1 cut(s)	180
BstXI	CCANNNNNNTGG	1 cut(s)	343
BstZI	CGGCCG	1 cut(s)	339
BsuRI	GGCC	2 cut(s)	341, 347
BtgI	CCRYGG	2 cut(s)	336, 342
BtsCI	GGATG	2 cut(s)	232, 303
BveI	ACCTGC	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	127
CaiI	CAGNNNCTG	1 cut(s)	289
CfoI	GCGC	2 cut(s)	127, 129
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	4 cut(s)	182, 289, 341, 347
CviKI_1	RGCY	4 cut(s)	182, 289, 341, 347
DpnI	GATC	2 cut(s)	44, 334
DpnII	GATC	2 cut(s)	42, 332
EaeI	YGGCCR	2 cut(s)	339, 345
EagI	CGGCCG	1 cut(s)	339
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
EclXI	CGGCCG	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	351
Eco47I	GGWCC	1 cut(s)	4
Eco52I	CGGCCG	1 cut(s)	339
EcoT14I	CCWWGG	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	1 cut(s)	49
FaiI	YATR	4 cut(s)	47, 56, 239, 373
FatI	CATG	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	348
FokI	GGATG	2 cut(s)	239, 310
Fsp4HI	GCNGC	1 cut(s)	348
FspBI	CTAG	1 cut(s)	104
GlaI	GCGC	2 cut(s)	126, 128
GluI	GCNGC	1 cut(s)	348
HaeIII	GGCC	2 cut(s)	341, 347
HhaI	GCGC	2 cut(s)	127, 129
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	1 cut(s)	49
Hin6I	GCGC	2 cut(s)	125, 127
HinP1I	GCGC	2 cut(s)	125, 127
HinfI	GANTC	3 cut(s)	142, 147, 216
HphI	GGTGA	5 cut(s)	220, 244, 281, 304, 371
Hpy166II	GTNNAC	2 cut(s)	97, 235
Hpy188I	TCNGA	1 cut(s)	285
Hpy188III	TCNNGA	2 cut(s)	151, 175
Hpy8I	GTNNAC	2 cut(s)	97, 235
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	3 cut(s)	148, 172, 295
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	3 cut(s)	36, 97, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpySE526I	ACGT	1 cut(s)	171
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	1 cut(s)	49
HspAI	GCGC	2 cut(s)	125, 127
Kzo9I	GATC	2 cut(s)	42, 332
LguI	GCTCTTC	1 cut(s)	20
LpnPI	CCDG	3 cut(s)	77, 205, 275
MaeI	CTAG	1 cut(s)	104
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	2 cut(s)	44, 334
MauBI	CGCGCGCG	1 cut(s)	125
MboI	GATC	2 cut(s)	42, 332
MboII	GAAGA	5 cut(s)	37, 52, 180, 214, 374
MhlI	GDGCHC	1 cut(s)	99
MlyI	GAGTC	2 cut(s)	156, 225
MnlI	CCTC	5 cut(s)	108, 240, 265, 268, 288
MslI	CAYNNNNRTG	1 cut(s)	341
MvnI	CGCG	3 cut(s)	125, 127, 129
MwoI	GCNNNNNNNGC	1 cut(s)	347
NdeII	GATC	2 cut(s)	42, 332
NlaIII	CATG	1 cut(s)	49
NmuCI	GTSAC	1 cut(s)	257
OliI	CACNNNNGTG	1 cut(s)	341
PaqCI	CACCTGC	1 cut(s)	82
PauI	GCGCGC	1 cut(s)	125
PciSI	GCTCTTC	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	142
PkrI	GCNGC	1 cut(s)	349
PleI	GAGTC	2 cut(s)	155, 224
PpsI	GAGTC	2 cut(s)	155, 224
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	1 cut(s)	289
PteI	GCGCGC	1 cut(s)	125
RseI	CAYNNNNRTG	1 cut(s)	341
SapI	GCTCTTC	1 cut(s)	20
SatI	GCNGC	1 cut(s)	348
Sau3AI	GATC	2 cut(s)	42, 332
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	156, 225
SduI	GDGCHC	1 cut(s)	99
SetI	ASST	6 cut(s)	81, 96, 159, 174, 271, 291
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	341
SsiI	CCGC	3 cut(s)	10, 129, 348
SspMI	CTAG	1 cut(s)	104
StyI	CCWWGG	1 cut(s)	351
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	1 cut(s)	145
TauI	GCSGC	1 cut(s)	350
TfiI	GAWTC	1 cut(s)	142
TseFI	GTSAC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	2 cut(s)	38, 314
TspGWI	ACGGA	1 cut(s)	276
VneI	GTGCAC	1 cut(s)	95
VpaK11BI	GGWCC	1 cut(s)	4
XspI	CTAG	1 cut(s)	104
ZraI	GACGTC	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.