Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004340.1

Orthogroup ID

OG0001610

Physical Location & Seq

Genomic Coordinates Forward (+)

83528 .. 84037

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004340.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 352 bp

atgcccggcgaagacatggaccaccgcaaagagagaatgaagagcgactgcaagaagatcatggacagcataaacgcaatgtgcttcgaaaacctgaacgacgagcaggtgcactcgctcgtgatgatgagggaaatcgcgcgcggagttgtggagaatcgagtcgggaaggtctccaacagcgacgtcaagaaggctctgtcttccagcattgagaagatggtggagtcgtgtagggatgtggtgaacatattgggcaggatttcgtgtcagggattaggcgaggaggagtttcagaagctcgtgaggatgaaggagattgcaatggggattgtgttgaaacgatccacgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

Metallophos

Protein Analysis

117

Amino Acids

13.28

Weight (kDa)

7.66

Isoelectric Point (pI)

46.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001610)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720
malus_domestica	MD09G1191500.v1.1
prunus_persica	Prupe.3G047600_v2.0.a1
pyrus_communis	pycom09g10800
rosa_chinensis	RchiOBHm_Chr2g0143611
rosa_laevigata	RLG00000020051 RLG00000033709
rosa_multiflora	Rmu_co8237331.1_g000001 Rmu_sc0002412.1_g000001 Rmu_sc0004340.1_g000029 Rmu_sc0031780.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101600 Rroxscaffold_4G00304410
rosa_rugosa	Rorug02G0384400 Rorug02G0384400 Rorug02G0384400 Rorug02G0384400
rosa_samantha	Rh1BG199600 Rh1DG227400 Rh2AG436200 Rh2BG443800 Rh2CG422400 Rh2DG454200
rosa_wichuraiana	Rw2G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	97
AatII	GACGTC	1 cut(s)	189
Acc36I	ACCTGC	1 cut(s)	97
AccII	CGCG	3 cut(s)	140, 142, 144
AciI	CCGC	2 cut(s)	25, 144
AclWI	GGATC	1 cut(s)	339
AcyI	GRCGYC	1 cut(s)	186
AgsI	TTSAA	1 cut(s)	340
AluBI	AGCT	1 cut(s)	301
AluI	AGCT	1 cut(s)	301
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	178
Alw44I	GTGCAC	1 cut(s)	110
AlwI	GGATC	1 cut(s)	339
ApaLI	GTGCAC	1 cut(s)	110
AspLEI	GCGC	2 cut(s)	142, 144
AspS9I	GGNCC	1 cut(s)	19
AsuC2I	CCSGG	1 cut(s)	6
AsuHPI	GGTGA	1 cut(s)	256
AsuII	TTCGAA	1 cut(s)	87
AvaII	GGWCC	1 cut(s)	19
BaeGI	GKGCMC	1 cut(s)	114
BauI	CACGAG	2 cut(s)	119, 302
BbsI	GAAGAC	2 cut(s)	18, 195
Bbv12I	GWGCWC	1 cut(s)	114
BccI	CCATC	1 cut(s)	214
BcnI	CCSGG	1 cut(s)	6
BcoDI	GTCTC	1 cut(s)	178
BfuAI	ACCTGC	1 cut(s)	97
Bme1390I	CCNGG	1 cut(s)	6
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	19
BmrFI	CCNGG	1 cut(s)	6
BpiI	GAAGAC	2 cut(s)	18, 195
Bpu14I	TTCGAA	1 cut(s)	87
BpuMI	CCSGG	1 cut(s)	6
BsaHI	GRCGYC	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	348
Bse3DI	GCAATG	2 cut(s)	84, 330
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	2 cut(s)	244, 315
BseMI	GCAATG	2 cut(s)	84, 330
BsePI	GCGCGC	1 cut(s)	140
BseRI	GAGGAG	2 cut(s)	299, 302
BseSI	GKGCMC	1 cut(s)	114
Bsh1236I	CGCG	3 cut(s)	140, 142, 144
BsiHKAI	GWGCWC	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	6
BsmAI	GTCTC	1 cut(s)	178
Bso31I	GGTCTC	1 cut(s)	178
Bsp119I	TTCGAA	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	57, 344
BspACI	CCGC	2 cut(s)	25, 144
BspFNI	CGCG	3 cut(s)	140, 142, 144
BspMI	ACCTGC	1 cut(s)	97
BspPI	GGATC	1 cut(s)	339
BspQI	GCTCTTC	1 cut(s)	35
BspT104I	TTCGAA	1 cut(s)	87
BspTNI	GGTCTC	1 cut(s)	178
BsrDI	GCAATG	2 cut(s)	84, 330
BssECI	CCNNGG	1 cut(s)	348
BssHII	GCGCGC	1 cut(s)	140
BssMI	GATC	2 cut(s)	57, 344
BssNI	GRCGYC	1 cut(s)	186
BssSI	CACGAG	2 cut(s)	119, 302
Bst2BI	CACGAG	2 cut(s)	119, 302
Bst6I	CTCTTC	1 cut(s)	35
BstACI	GRCGYC	1 cut(s)	186
BstBI	TTCGAA	1 cut(s)	87
BstC8I	GCNNGC	1 cut(s)	142
BstDSI	CCRYGG	1 cut(s)	348
BstF5I	GGATG	2 cut(s)	244, 315
BstFNI	CGCG	3 cut(s)	140, 142, 144
BstHHI	GCGC	2 cut(s)	142, 144
BstKTI	GATC	2 cut(s)	60, 347
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	2 cut(s)	57, 344
BstSCI	CCNGG	1 cut(s)	4
BstSLI	GKGCMC	1 cut(s)	114
BstUI	CGCG	3 cut(s)	140, 142, 144
BstV2I	GAAGAC	2 cut(s)	18, 195
BtgI	CCRYGG	1 cut(s)	348
BtsCI	GGATG	2 cut(s)	244, 315
BveI	ACCTGC	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	142
CfoI	GCGC	2 cut(s)	142, 144
Cfr13I	GGNCC	1 cut(s)	19
CviAII	CATG	2 cut(s)	16, 61
CviJI	RGCY	2 cut(s)	197, 301
CviKI_1	RGCY	2 cut(s)	197, 301
DpnI	GATC	2 cut(s)	59, 346
DpnII	GATC	2 cut(s)	57, 344
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco31I	GGTCTC	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	19
FaeI	CATG	2 cut(s)	19, 64
FaiI	YATR	4 cut(s)	17, 62, 71, 251
FatI	CATG	2 cut(s)	15, 60
FokI	GGATG	2 cut(s)	251, 322
GlaI	GCGC	2 cut(s)	141, 143
HapII	CCGG	1 cut(s)	6
HhaI	GCGC	2 cut(s)	142, 144
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	2 cut(s)	19, 64
Hin6I	GCGC	2 cut(s)	140, 142
HinP1I	GCGC	2 cut(s)	140, 142
HinfI	GANTC	3 cut(s)	157, 162, 227
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	2 cut(s)	112, 247
Hpy188I	TCNGA	1 cut(s)	297
Hpy188III	TCNNGA	4 cut(s)	121, 166, 190, 304
Hpy8I	GTNNAC	2 cut(s)	112, 247
Hpy99I	CGWCG	2 cut(s)	104, 188
HpyAV	CCTTC	3 cut(s)	163, 187, 307
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	3 cut(s)	51, 112, 323
HpySE526I	ACGT	1 cut(s)	186
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	2 cut(s)	19, 64
HspAI	GCGC	2 cut(s)	140, 142
Kzo9I	GATC	2 cut(s)	57, 344
LguI	GCTCTTC	1 cut(s)	35
LpnPI	CCDG	6 cut(s)	19, 92, 107, 220, 244, 257
MaeII	ACGT	1 cut(s)	186
MalI	GATC	2 cut(s)	59, 346
MauBI	CGCGCGCG	1 cut(s)	140
MboI	GATC	2 cut(s)	57, 344
MboII	GAAGA	5 cut(s)	23, 52, 67, 195, 229
MhlI	GDGCHC	1 cut(s)	114
MlyI	GAGTC	2 cut(s)	171, 236
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	4 cut(s)	123, 277, 280, 300
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	6
MvnI	CGCG	3 cut(s)	140, 142, 144
NciI	CCSGG	1 cut(s)	6
NdeII	GATC	2 cut(s)	57, 344
NlaIII	CATG	2 cut(s)	19, 64
NspV	TTCGAA	1 cut(s)	87
PaqCI	CACCTGC	1 cut(s)	97
PauI	GCGCGC	1 cut(s)	140
PciSI	GCTCTTC	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	157
PleI	GAGTC	2 cut(s)	170, 235
PpsI	GAGTC	2 cut(s)	170, 235
PspPI	GGNCC	1 cut(s)	19
PteI	GCGCGC	1 cut(s)	140
SapI	GCTCTTC	1 cut(s)	35
Sau3AI	GATC	2 cut(s)	57, 344
Sau96I	GGNCC	1 cut(s)	19
SchI	GAGTC	2 cut(s)	171, 236
ScrFI	CCNGG	1 cut(s)	6
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	5 cut(s)	96, 111, 174, 189, 303
SfuI	TTCGAA	1 cut(s)	87
SinI	GGWCC	1 cut(s)	19
SsiI	CCGC	2 cut(s)	25, 144
StyD4I	CCNGG	1 cut(s)	4
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	2 cut(s)	87, 160
TfiI	GAWTC	1 cut(s)	157
TspDTI	ATGAA	2 cut(s)	53, 326
VneI	GTGCAC	1 cut(s)	110
VpaK11BI	GGWCC	1 cut(s)	19
ZraI	GACGTC	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.