Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031780.1

Orthogroup ID

OG0001610

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2221

Gene Structure 2221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031780.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

atgcccagtagagtatatctactccgtggaaaccatgaatctagatattgtacattactgtatggttttgaggaggaggtcaagactaaatttggtgatcatggtgaatatgtctataataaatgcctcgactgctttaaagagcttcctctggcttcagtcatagccaattctgtatataccacacatggaggtcttttccggagtagtacctcttcgagaaagtcaaaaagaaagagggaggaaagccttgaactgggttctctagaagatttatctaaagttaaaagatctcttatagatgcgcctgatgtaggtccgaatgtattactcactgacttactatggtcagatccatcaaaggaagatggtctagttgaaaagacatttcgagaacgaggtctttggtggggtcctgactgcactgaggcttttctaaaacaatccaacttgaagttgatcatacgatcacatgaaggtccagatgtaagggaagatcaagatgactttggtgacatgctaagtggttatagtgtggatcatgtaggagattcagggaagttatacactttgtttagtgctccagattacccacagtgtggtgaaaagagatataacaacaaaggagtctatgctgtattgaaacctcctaattttgaaagtccttcattccactcattcaaggatgtaggaaggccacaggctgatgctgatggcgataacgatctggtcattgttgataaaccaggttcagtaacagcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

Metallophos

Protein Analysis

254

Amino Acids

28.51

Weight (kDa)

5.35

Isoelectric Point (pI)

41.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001610)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720
malus_domestica	MD09G1191500.v1.1
prunus_persica	Prupe.3G047600_v2.0.a1
pyrus_communis	pycom09g10800
rosa_chinensis	RchiOBHm_Chr2g0143611
rosa_laevigata	RLG00000020051 RLG00000033709
rosa_multiflora	Rmu_co8237331.1_g000001 Rmu_sc0002412.1_g000001 Rmu_sc0004340.1_g000029 Rmu_sc0031780.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101600 Rroxscaffold_4G00304410
rosa_rugosa	Rorug02G0384400 Rorug02G0384400 Rorug02G0384400 Rorug02G0384400
rosa_samantha	Rh1BG199600 Rh1DG227400 Rh2AG436200 Rh2BG443800 Rh2CG422400 Rh2DG454200
rosa_wichuraiana	Rw2G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	599
AccIII	TCCGGA	1 cut(s)	201
AclWI	GGATC	2 cut(s)	347, 546
AcsI	RAATTY	1 cut(s)	89
AcuI	CTGAAG	1 cut(s)	141
AdeI	CACNNNGTG	1 cut(s)	599
AfaI	GTAC	2 cut(s)	52, 211
AfiI	CCNNNNNNNGG	3 cut(s)	256, 314, 599
AgsI	TTSAA	6 cut(s)	254, 380, 454, 643, 659, 682
AjnI	CCWGG	1 cut(s)	745
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
Alw21I	GWGCWC	1 cut(s)	583
AlwI	GGATC	2 cut(s)	347, 546
Aor13HI	TCCGGA	1 cut(s)	201
AoxI	GGCC	1 cut(s)	695
ApoI	RAATTY	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	307
AspS9I	GGNCC	3 cut(s)	317, 413, 479
AsuHPI	GGTGA	4 cut(s)	107, 116, 524, 614
AvaII	GGWCC	3 cut(s)	317, 413, 479
BarI	GAAGNNNNNNTAC	2 cut(s)	199, 231
Bbv12I	GWGCWC	1 cut(s)	583
BccI	CCATC	3 cut(s)	362, 364, 707
BciT130I	CCWGG	1 cut(s)	747
BclI	TGATCA	2 cut(s)	97, 459
BfaI	CTAG	3 cut(s)	42, 266, 374
BglII	AGATCT	1 cut(s)	290
Bme1390I	CCNGG	1 cut(s)	747
Bme18I	GGWCC	3 cut(s)	317, 413, 479
BmgT120I	GGNCC	3 cut(s)	317, 413, 479
BmiI	GGNNCC	1 cut(s)	414
BmrFI	CCNGG	1 cut(s)	747
BmrI	ACTGGG	1 cut(s)	266
BmsI	GCATC	2 cut(s)	292, 697
BmuI	ACTGGG	1 cut(s)	266
BpmI	CTGGAG	1 cut(s)	567
BsaBI	GATNNNNATC	1 cut(s)	723
BsaJI	CCNNGG	1 cut(s)	25
BsaWI	WCCGGW	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	3 cut(s)	256, 314, 599
Bse1I	ACTGG	2 cut(s)	6, 261
Bse8I	GATNNNNATC	1 cut(s)	723
BseAI	TCCGGA	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	747
BseDI	CCNNGG	1 cut(s)	25
BseGI	GGATG	1 cut(s)	691
BseJI	GATNNNNATC	1 cut(s)	723
BseLI	CCNNNNNNNGG	3 cut(s)	256, 314, 599
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	2 cut(s)	6, 261
BseRI	GAGGAG	2 cut(s)	86, 89
BsgI	GTGCAG	1 cut(s)	406
BshFI	GGCC	1 cut(s)	697
BsiHKAI	GWGCWC	1 cut(s)	583
BsiSI	CCGG	1 cut(s)	202
BslI	CCNNNNNNNGG	3 cut(s)	256, 314, 599
BsnI	GGCC	1 cut(s)	697
Bsp1286I	GDGCHC	1 cut(s)	583
Bsp13I	TCCGGA	1 cut(s)	201
Bsp1407I	TGTACA	1 cut(s)	50
Bsp143I	GATC	8 cut(s)	97, 290, 352, 459, 467, 496, 538, 724
BspANI	GGCC	1 cut(s)	697
BspCNI	CTCAG	1 cut(s)	418
BspEI	TCCGGA	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	414
BspPI	GGATC	2 cut(s)	347, 546
BsrGI	TGTACA	1 cut(s)	50
BsrI	ACTGG	2 cut(s)	6, 261
BssECI	CCNNGG	1 cut(s)	25
BssMI	GATC	8 cut(s)	97, 290, 352, 459, 467, 496, 538, 724
Bst2UI	CCWGG	1 cut(s)	747
Bst4CI	ACNGT	2 cut(s)	60, 597
Bst6I	CTCTTC	1 cut(s)	220
BstAUI	TGTACA	1 cut(s)	50
BstDEI	CTNAG	2 cut(s)	426, 521
BstDSI	CCRYGG	1 cut(s)	25
BstENI	CCTNNNNNAGG	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	691
BstHHI	GCGC	1 cut(s)	307
BstKTI	GATC	8 cut(s)	100, 293, 355, 462, 470, 499, 541, 727
BstMBI	GATC	8 cut(s)	97, 290, 352, 459, 467, 496, 538, 724
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BstNI	CCWGG	1 cut(s)	747
BstNSI	RCATGY	1 cut(s)	520
BstSCI	CCNGG	1 cut(s)	745
BstX2I	RGATCY	2 cut(s)	290, 352
BstYI	RGATCY	2 cut(s)	290, 352
BsuRI	GGCC	1 cut(s)	697
BtgI	CCRYGG	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	691
BtsIMutI	CAGTG	3 cut(s)	333, 423, 602
CfoI	GCGC	1 cut(s)	307
Cfr13I	GGNCC	3 cut(s)	317, 413, 479
CsiI	ACCWGGT	1 cut(s)	745
Csp6I	GTAC	2 cut(s)	51, 210
CviAII	CATG	6 cut(s)	35, 101, 188, 473, 517, 542
CviJI	RGCY	7 cut(s)	145, 155, 167, 249, 431, 697, 704
CviKI_1	RGCY	7 cut(s)	145, 155, 167, 249, 431, 697, 704
CviQI	GTAC	2 cut(s)	51, 210
DdeI	CTNAG	2 cut(s)	426, 521
DpnI	GATC	8 cut(s)	99, 292, 354, 461, 469, 498, 540, 726
DpnII	GATC	8 cut(s)	97, 290, 352, 459, 467, 496, 538, 724
DraI	TTTAAA	1 cut(s)	139
DraIII	CACNNNGTG	1 cut(s)	599
Eam1104I	CTCTTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	220
Eco47I	GGWCC	3 cut(s)	317, 413, 479
Eco57I	CTGAAG	1 cut(s)	141
EcoNI	CCTNNNNNAGG	1 cut(s)	312
EcoO109I	RGGNCCY	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	745
FaeI	CATG	6 cut(s)	38, 104, 191, 476, 520, 545
FatI	CATG	6 cut(s)	34, 100, 187, 472, 516, 541
FbaI	TGATCA	2 cut(s)	97, 459
FokI	GGATG	1 cut(s)	698
FspBI	CTAG	3 cut(s)	42, 266, 374
GlaI	GCGC	1 cut(s)	306
GsuI	CTGGAG	1 cut(s)	567
HaeIII	GGCC	1 cut(s)	697
HapII	CCGG	1 cut(s)	202
HhaI	GCGC	1 cut(s)	307
Hin1II	CATG	6 cut(s)	38, 104, 191, 476, 520, 545
Hin6I	GCGC	1 cut(s)	305
HinP1I	GCGC	1 cut(s)	305
HinfI	GANTC	3 cut(s)	38, 551, 627
HpaII	CCGG	1 cut(s)	202
HphI	GGTGA	4 cut(s)	107, 116, 524, 614
Hpy188I	TCNGA	2 cut(s)	321, 352
HpyAV	CCTTC	3 cut(s)	470, 675, 687
HpyCH4III	ACNGT	2 cut(s)	60, 597
HpyCH4V	TGCA	1 cut(s)	423
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
HpyF3I	CTNAG	2 cut(s)	426, 521
Hsp92II	CATG	6 cut(s)	38, 104, 191, 476, 520, 545
HspAI	GCGC	1 cut(s)	305
Kpn2I	TCCGGA	1 cut(s)	201
Ksp22I	TGATCA	2 cut(s)	97, 459
Kzo9I	GATC	8 cut(s)	97, 290, 352, 459, 467, 496, 538, 724
LmnI	GCTCC	1 cut(s)	586
LweI	GCATC	2 cut(s)	292, 697
MabI	ACCWGGT	1 cut(s)	745
MaeI	CTAG	3 cut(s)	42, 266, 374
MaeIII	GTNAC	2 cut(s)	512, 754
MalI	GATC	8 cut(s)	99, 292, 354, 461, 469, 498, 540, 726
MboI	GATC	8 cut(s)	97, 290, 352, 459, 467, 496, 538, 724
MboII	GAAGA	4 cut(s)	207, 281, 377, 506
MflI	RGATCY	2 cut(s)	290, 352
MhlI	GDGCHC	1 cut(s)	583
MluCI	AATT	3 cut(s)	89, 169, 652
MlyI	GAGTC	1 cut(s)	636
MmeI	TCCRAC	1 cut(s)	471
MroI	TCCGGA	1 cut(s)	201
MseI	TTAA	2 cut(s)	138, 285
MspI	CCGG	1 cut(s)	202
MspR9I	CCNGG	1 cut(s)	747
MvaI	CCWGG	1 cut(s)	747
MwoI	GCNNNNNNNGC	1 cut(s)	132
NdeII	GATC	8 cut(s)	97, 290, 352, 459, 467, 496, 538, 724
NlaIII	CATG	6 cut(s)	38, 104, 191, 476, 520, 545
NlaIV	GGNNCC	1 cut(s)	414
NmuCI	GTSAC	1 cut(s)	512
NspI	RCATGY	1 cut(s)	520
PfeI	GAWTC	2 cut(s)	38, 551
PflMI	CCANNNNNTGG	1 cut(s)	599
PleI	GAGTC	1 cut(s)	635
PpsI	GAGTC	1 cut(s)	635
PpuMI	RGGWCCY	1 cut(s)	413
Psp5II	RGGWCCY	1 cut(s)	413
Psp6I	CCWGG	1 cut(s)	745
PspGI	CCWGG	1 cut(s)	745
PspN4I	GGNNCC	1 cut(s)	414
PspPI	GGNCC	3 cut(s)	317, 413, 479
PspPPI	RGGWCCY	1 cut(s)	413
PsuI	RGATCY	2 cut(s)	290, 352
RsaI	GTAC	2 cut(s)	52, 211
RsaNI	GTAC	2 cut(s)	51, 210
SaqAI	TTAA	2 cut(s)	138, 285
Sau3AI	GATC	8 cut(s)	97, 290, 352, 459, 467, 496, 538, 724
Sau96I	GGNCC	3 cut(s)	317, 413, 479
SchI	GAGTC	1 cut(s)	636
ScrFI	CCNGG	1 cut(s)	747
SduI	GDGCHC	1 cut(s)	583
SetI	ASST	9 cut(s)	81, 147, 196, 215, 319, 403, 481, 649, 751
SexAI	ACCWGGT	1 cut(s)	745
SfaNI	GCATC	2 cut(s)	292, 697
SinI	GGWCC	3 cut(s)	317, 413, 479
Sse9I	AATT	3 cut(s)	89, 169, 652
SspMI	CTAG	3 cut(s)	42, 266, 374
StyD4I	CCNGG	1 cut(s)	745
TaaI	ACNGT	2 cut(s)	60, 597
TaqI	TCGA	3 cut(s)	129, 218, 391
TasI	AATT	3 cut(s)	89, 169, 652
TatI	WGTACW	1 cut(s)	50
TfiI	GAWTC	2 cut(s)	38, 551
Tru1I	TTAA	2 cut(s)	138, 285
Tru9I	TTAA	2 cut(s)	138, 285
TscAI	CASTG	3 cut(s)	340, 430, 602
TseFI	GTSAC	1 cut(s)	512
Tsp45I	GTSAC	1 cut(s)	512
TspDTI	ATGAA	3 cut(s)	51, 489, 657
TspGWI	ACGGA	1 cut(s)	14
TspRI	CASTG	3 cut(s)	340, 430, 602
Van91I	CCANNNNNTGG	1 cut(s)	599
VpaK11BI	GGWCC	3 cut(s)	317, 413, 479
XagI	CCTNNNNNAGG	1 cut(s)	312
XapI	RAATTY	1 cut(s)	89
XbaI	TCTAGA	2 cut(s)	41, 265
XceI	RCATGY	1 cut(s)	520
XspI	CTAG	3 cut(s)	42, 266, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.