Rh1DG227400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001610
Physical Location & Seq
Reverse (-)
43750099 .. 43752150
2052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG227400.1

Sequence Viewer

Length: 474 bp
ATGGCCTTTGTTACTACGAACACGGCGTCGATGGATTTTGGACTTCGATTTGCAGAGACGGCGGTTAGGAAGGCTCTGTCCCTGATCGGCACTGATATTGCCACCTATGTGAAGCCGAGTGTTTTGGGACTCGGTTTGCAGCCGGTCAGAGAAGGCTTTGAGGCCAAACTGGGGTCAGGTTTGAAGTGGTTCAGAGGCTGTTGCCATCGCAAGATAATGGTGAGGTATAGAGCATTTGGATGCAAAGAAAATGAAATTCAGCCGATAGCTGAAAAATTATTTAAGGATGAAGCTGTTATCAAAATTAATACCCACTGGGGGAGCTTTGATGACACTGATTGGGCAATATATAACTTGAATAAAAGGAAGATAGATTCAGTGAAGCAACATGAGGGTGGTGTGAAGCCCTGCTTTGTGATTGAGTGTTTGAAAAGACTAACCAGTGATAATTCTATCAAGGATGATATTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.75

Weight (kDa)

8.97

Isoelectric Point (pI)

22.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 62
AcsI RAATTY 1 cut(s) 255
AcyI GRCGYC 1 cut(s) 26
AfiI CCNNNNNNNGG 2 cut(s) 171, 318
AgsI TTSAA 3 cut(s) 184, 358, 430
AleI CACNNNNGTG 1 cut(s) 107
AluBI AGCT 3 cut(s) 269, 293, 324
AluI AGCT 3 cut(s) 269, 293, 324
Alw26I GTCTC 1 cut(s) 50
AlwNI CAGNNNCTG 1 cut(s) 198
AoxI GGCC 2 cut(s) 3, 162
ApeKI GCWGC 1 cut(s) 139
ApoI RAATTY 1 cut(s) 255
ArsI GACNNNNNNTTYG 2 cut(s) 11, 43
AseI ATTAAT 1 cut(s) 306
Asp700I GAANNNNTTC 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 232
BbvI GCAGC 1 cut(s) 151
BccI CCATC 2 cut(s) 25, 213
BceAI ACGGC 2 cut(s) 39, 75
BcoDI GTCTC 1 cut(s) 50
BisI GCNGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 141
BmrI ACTGGG 2 cut(s) 179, 325
BmsI GCATC 1 cut(s) 230
BmuI ACTGGG 2 cut(s) 179, 325
BsaHI GRCGYC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 318
Bse118I RCCGGY 1 cut(s) 142
Bse1I ACTGG 3 cut(s) 174, 320, 441
BseGI GGATG 3 cut(s) 245, 292, 466
BseLI CCNNNNNNNGG 2 cut(s) 171, 318
BseNI ACTGG 3 cut(s) 174, 320, 441
BseXI GCAGC 1 cut(s) 151
BshFI GGCC 2 cut(s) 5, 164
BsiSI CCGG 1 cut(s) 143
BslFI GGGAC 2 cut(s) 64, 141
BslI CCNNNNNNNGG 2 cut(s) 171, 318
BsmAI GTCTC 1 cut(s) 50
BsmBI CGTCTC 1 cut(s) 50
BsmFI GGGAC 2 cut(s) 64, 141
BsnI GGCC 2 cut(s) 5, 164
Bsp143I GATC 1 cut(s) 84
BspACI CCGC 1 cut(s) 62
BspANI GGCC 2 cut(s) 5, 164
BsrFI RCCGGY 1 cut(s) 142
BsrI ACTGG 3 cut(s) 174, 320, 441
BssAI RCCGGY 1 cut(s) 142
BssMI GATC 1 cut(s) 84
BssNI GRCGYC 1 cut(s) 26
BstACI GRCGYC 1 cut(s) 26
BstF5I GGATG 3 cut(s) 245, 292, 466
BstKTI GATC 1 cut(s) 87
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 1 cut(s) 84
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstV1I GCAGC 1 cut(s) 151
BsuRI GGCC 2 cut(s) 5, 164
BtgZI GCGATG 1 cut(s) 191
BtsCI GGATG 3 cut(s) 245, 292, 466
BtsIMutI CAGTG 5 cut(s) 90, 313, 333, 384, 448
CaiI CAGNNNCTG 1 cut(s) 198
Cfr10I RCCGGY 1 cut(s) 142
CseI GACGC 1 cut(s) 15
CviAII CATG 1 cut(s) 389
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
Esp3I CGTCTC 1 cut(s) 50
FaeI CATG 1 cut(s) 392
FaiI YATR 5 cut(s) 108, 228, 349, 351, 390
FalI AAGNNNNNCTT 2 cut(s) 395, 427
FaqI GGGAC 2 cut(s) 64, 141
FatI CATG 1 cut(s) 388
Fnu4HI GCNGC 1 cut(s) 140
FokI GGATG 2 cut(s) 252, 299
Fsp4HI GCNGC 1 cut(s) 140
GluI GCNGC 1 cut(s) 140
HaeIII GGCC 2 cut(s) 5, 164
HapII CCGG 1 cut(s) 143
HgaI GACGC 1 cut(s) 15
Hin1I GRCGYC 1 cut(s) 26
Hin1II CATG 1 cut(s) 392
HinfI GANTC 2 cut(s) 129, 374
HpaII CCGG 1 cut(s) 143
HphI GGTGA 1 cut(s) 232
Hpy188I TCNGA 2 cut(s) 149, 194
Hpy99I CGWCG 1 cut(s) 31
HpyAV CCTTC 2 cut(s) 64, 146
HpyCH4V TGCA 3 cut(s) 53, 139, 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
Hsp92I GRCGYC 1 cut(s) 26
Hsp92II CATG 1 cut(s) 392
Kzo9I GATC 1 cut(s) 84
LmnI GCTCC 1 cut(s) 321
LpnPI CCDG 7 cut(s) 95, 155, 156, 162, 301, 421, 454
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 10
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MboII GAAGA 1 cut(s) 379
MluCI AATT 4 cut(s) 255, 275, 303, 448
MlyI GAGTC 1 cut(s) 123
MnlI CCTC 4 cut(s) 154, 188, 216, 385
MroXI GAANNNNTTC 1 cut(s) 188
MseI TTAA 2 cut(s) 282, 306
MslI CAYNNNNRTG 3 cut(s) 107, 238, 393
MspI CCGG 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 59
NdeII GATC 1 cut(s) 84
NlaIII CATG 1 cut(s) 392
NmeAIII GCCGAG 1 cut(s) 141
OliI CACNNNNGTG 1 cut(s) 107
PcsI WCGNNNNNNNCGW 1 cut(s) 23
PdmI GAANNNNTTC 1 cut(s) 188
PfeI GAWTC 1 cut(s) 374
PkrI GCNGC 1 cut(s) 141
PleI GAGTC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 123
PshBI ATTAAT 1 cut(s) 306
PstNI CAGNNNCTG 1 cut(s) 198
RseI CAYNNNNRTG 3 cut(s) 107, 238, 393
SaqAI TTAA 2 cut(s) 282, 306
SatI GCNGC 1 cut(s) 140
Sau3AI GATC 1 cut(s) 84
SchI GAGTC 1 cut(s) 123
SetI ASST 6 cut(s) 107, 181, 227, 271, 295, 326
SfaNI GCATC 1 cut(s) 230
SmiMI CAYNNNNRTG 3 cut(s) 107, 238, 393
Sse9I AATT 4 cut(s) 255, 275, 303, 448
SsiI CCGC 1 cut(s) 62
TaqI TCGA 2 cut(s) 29, 46
TasI AATT 4 cut(s) 255, 275, 303, 448
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 2 cut(s) 282, 306
Tru9I TTAA 2 cut(s) 282, 306
TscAI CASTG 5 cut(s) 97, 320, 340, 384, 448
TseI GCWGC 1 cut(s) 139
TspDTI ATGAA 2 cut(s) 267, 303
TspRI CASTG 5 cut(s) 97, 320, 340, 384, 448
VspI ATTAAT 1 cut(s) 306
XapI RAATTY 1 cut(s) 255
XmnI GAANNNNTTC 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.