Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001610

Physical Location & Seq

Genomic Coordinates Forward (+)

25082816 .. 25085954

Gene Structure 3139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00304410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGACCACCGTAAAGAGAGAATGAAGAGCGATTGCAAGAAGATCATGGACACCATAAACGCAATGTGCTTCGAAAACCTAAACGACAAGCGGGATGTGGTGAACATATTGGGGAGGATTTCGTGTGAGGGATTAGGTAAGGAGGAGTTTCGAGAAGCTGGTGAGGATGAAGGAGATTGCAATGGGGATTATGTTGAAACGATCCACATTGTGGCCGCCTTGGGTGGTGAAGAACAATATGGAGTCTTTAGATGTAAAGAAAATGAAATTCAGCCAATAGCTGAAAAATTATTGAAGGATGAAGCTGTTATCAAAATTAATACCCACTGGGGGAGCTTTGATGACAACGATTGGGCAATACATAACTTGAATAAAAGGAAGATAGATTCAGTGAAGCAACATGAGGGTGGTGTGAAGCCCTGCTTTGTGATTGAGTGTTTGAAAAGACTAACCAGTGATAATTCCACCAAGGATGATATTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

Metallophos

Protein Analysis

161

Amino Acids

18.42

Weight (kDa)

5.09

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001610)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720 FvH4_6g33720
malus_domestica	MD09G1191500.v1.1
prunus_persica	Prupe.3G047600_v2.0.a1
pyrus_communis	pycom09g10800
rosa_chinensis	RchiOBHm_Chr2g0143611
rosa_laevigata	RLG00000020051 RLG00000033709
rosa_multiflora	Rmu_co8237331.1_g000001 Rmu_sc0002412.1_g000001 Rmu_sc0004340.1_g000029 Rmu_sc0031780.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101600 Rroxscaffold_4G00304410
rosa_rugosa	Rorug02G0384400 Rorug02G0384400 Rorug02G0384400 Rorug02G0384400
rosa_samantha	Rh1BG199600 Rh1DG227400 Rh2AG436200 Rh2BG443800 Rh2CG422400 Rh2DG454200
rosa_wichuraiana	Rw2G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	211
AciI	CCGC	2 cut(s)	91, 216
AclWI	GGATC	1 cut(s)	196
AcoI	YGGCCR	1 cut(s)	213
AcsI	RAATTY	1 cut(s)	267
AdeI	CACNNNGTG	1 cut(s)	211
AfiI	CCNNNNNNNGG	2 cut(s)	211, 330
AgsI	TTSAA	4 cut(s)	197, 295, 370, 442
AluBI	AGCT	4 cut(s)	158, 281, 305, 336
AluI	AGCT	4 cut(s)	158, 281, 305, 336
AlwI	GGATC	1 cut(s)	196
AoxI	GGCC	1 cut(s)	213
ApoI	RAATTY	1 cut(s)	267
AseI	ATTAAT	1 cut(s)	318
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	3 cut(s)	112, 173, 239
AsuII	TTCGAA	1 cut(s)	72
AvaII	GGWCC	1 cut(s)	4
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmrI	ACTGGG	1 cut(s)	337
BmuI	ACTGGG	1 cut(s)	337
Bpu14I	TTCGAA	1 cut(s)	72
BsaJI	CCNNGG	2 cut(s)	219, 468
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 330
Bse1I	ACTGG	2 cut(s)	332, 453
Bse3DI	GCAATG	2 cut(s)	69, 187
BseDI	CCNNGG	2 cut(s)	219, 468
BseGI	GGATG	4 cut(s)	100, 172, 304, 478
BseLI	CCNNNNNNNGG	2 cut(s)	211, 330
BseMI	GCAATG	2 cut(s)	69, 187
BseNI	ACTGG	2 cut(s)	332, 453
BseRI	GAGGAG	1 cut(s)	158
BshFI	GGCC	1 cut(s)	215
BslI	CCNNNNNNNGG	2 cut(s)	211, 330
BsnI	GGCC	1 cut(s)	215
Bsp119I	TTCGAA	1 cut(s)	72
Bsp143I	GATC	2 cut(s)	42, 201
BspACI	CCGC	2 cut(s)	91, 216
BspANI	GGCC	1 cut(s)	215
BspPI	GGATC	1 cut(s)	196
BspQI	GCTCTTC	1 cut(s)	20
BspT104I	TTCGAA	1 cut(s)	72
BsrDI	GCAATG	2 cut(s)	69, 187
BsrI	ACTGG	2 cut(s)	332, 453
BssECI	CCNNGG	2 cut(s)	219, 468
BssMI	GATC	2 cut(s)	42, 201
BssT1I	CCWWGG	2 cut(s)	219, 468
Bst4CI	ACNGT	1 cut(s)	11
Bst6I	CTCTTC	1 cut(s)	20
BstBI	TTCGAA	1 cut(s)	72
BstF5I	GGATG	4 cut(s)	100, 172, 304, 478
BstKTI	GATC	2 cut(s)	45, 204
BstMBI	GATC	2 cut(s)	42, 201
BsuRI	GGCC	1 cut(s)	215
BtsCI	GGATG	4 cut(s)	100, 172, 304, 478
BtsIMutI	CAGTG	3 cut(s)	325, 396, 460
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	2 cut(s)	46, 401
CviJI	RGCY	7 cut(s)	158, 215, 274, 281, 305, 336, 418
CviKI_1	RGCY	7 cut(s)	158, 215, 274, 281, 305, 336, 418
DpnI	GATC	2 cut(s)	44, 203
DpnII	GATC	2 cut(s)	42, 201
DraIII	CACNNNGTG	1 cut(s)	211
EaeI	YGGCCR	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	219, 468
Eco47I	GGWCC	1 cut(s)	4
EcoT14I	CCWWGG	2 cut(s)	219, 468
ErhI	CCWWGG	2 cut(s)	219, 468
FaeI	CATG	2 cut(s)	49, 404
FaiI	YATR	7 cut(s)	47, 56, 107, 192, 240, 363, 402
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FatI	CATG	2 cut(s)	45, 400
FauI	CCCGC	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	216
FokI	GGATG	3 cut(s)	107, 179, 311
Fsp4HI	GCNGC	1 cut(s)	216
GluI	GCNGC	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	215
Hin1II	CATG	2 cut(s)	49, 404
HinfI	GANTC	2 cut(s)	243, 386
HphI	GGTGA	3 cut(s)	112, 173, 239
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	2 cut(s)	164, 289
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4V	TGCA	2 cut(s)	36, 180
Hsp92II	CATG	2 cut(s)	49, 404
Kzo9I	GATC	2 cut(s)	42, 201
LguI	GCTCTTC	1 cut(s)	20
LmnI	GCTCC	1 cut(s)	333
LpnPI	CCDG	4 cut(s)	144, 313, 433, 466
MalI	GATC	2 cut(s)	44, 203
MboI	GATC	2 cut(s)	42, 201
MboII	GAAGA	4 cut(s)	37, 52, 242, 391
MluCI	AATT	4 cut(s)	267, 287, 315, 460
MlyI	GAGTC	1 cut(s)	252
MnlI	CCTC	5 cut(s)	108, 121, 136, 157, 397
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	1 cut(s)	405
NdeII	GATC	2 cut(s)	42, 201
NlaIII	CATG	2 cut(s)	49, 404
NspV	TTCGAA	1 cut(s)	72
PciSI	GCTCTTC	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	386
PflMI	CCANNNNNTGG	1 cut(s)	211
PkrI	GCNGC	1 cut(s)	217
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
PshBI	ATTAAT	1 cut(s)	318
PspPI	GGNCC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	405
SapI	GCTCTTC	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	2 cut(s)	42, 201
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	252
SetI	ASST	6 cut(s)	81, 139, 160, 283, 307, 338
SfuI	TTCGAA	1 cut(s)	72
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	405
Sse9I	AATT	4 cut(s)	267, 287, 315, 460
SsiI	CCGC	2 cut(s)	91, 216
StyI	CCWWGG	2 cut(s)	219, 468
TaaI	ACNGT	1 cut(s)	11
TaqI	TCGA	2 cut(s)	72, 151
TasI	AATT	4 cut(s)	267, 287, 315, 460
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	3 cut(s)	332, 396, 460
TspDTI	ATGAA	4 cut(s)	38, 183, 279, 315
TspRI	CASTG	3 cut(s)	332, 396, 460
Van91I	CCANNNNNTGG	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	4
VspI	ATTAAT	1 cut(s)	318
XapI	RAATTY	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.