Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7960896.1

Orthogroup ID

OG0004306

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 308

Gene Structure 308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7960896.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 281 bp

atgcaggaaagggtaagcaagaatatggtcaatgtgtcacagagttctgacactagagagaaaatcattctttctatggatcacagtaaagggtttacaagactgaaagatcagaatttgaataaatctgatcctcagggacagacaaaaacttatgtaggcaagcacgattctctactgacatctcaagatgatcttgatgtatcatcacgaatggatgtatatgctgacaatagcaaggactttatcaatatcagatctactcctcagaaagatacaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003678 GO:0003824 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

DEAD_2 Helicase_C_2

Protein Analysis

93

Amino Acids

10.6

Weight (kDa)

6.72

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20720 AT1G20720 AT1G20750
fragaria_vesca	FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570
malus_domestica	MD16G1283500.v1.1
prunus_persica	Prupe.5G009400_v2.0.a1 Prupe.5G009400_v2.0.a1 Prupe.5G009400_v2.0.a1
pyrus_communis	pycom16g26050
rosa_chinensis	RchiOBHm_Chr7g0215861
rosa_multiflora	Rmu_co7960896.1_g000001 Rmu_sc0004689.1_g000011 Rmu_sc0009085.1_g000007
rosa_roxburghii	Rroxscaffold_3G00243840
rosa_samantha	Rh7AG294400 Rh7CG314400 Rh7DG297200
rosa_wichuraiana	Rw7G024990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	87, 125
AcsI	RAATTY	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	121
AlwI	GGATC	2 cut(s)	87, 125
ApoI	RAATTY	1 cut(s)	115
AxyI	CCTNAGG	1 cut(s)	135
BfaI	CTAG	1 cut(s)	54
BglII	AGATCT	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	171
Bse21I	CCTNAGG	1 cut(s)	135
BseGI	GGATG	1 cut(s)	223
BseMII	CTCAG	2 cut(s)	149, 281
BseRI	GAGGAG	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	153
BsmFI	GGGAC	1 cut(s)	153
Bsp143I	GATC	5 cut(s)	79, 109, 130, 193, 257
BspCNI	CTCAG	2 cut(s)	148, 280
BspPI	GGATC	2 cut(s)	87, 125
BssMI	GATC	5 cut(s)	79, 109, 130, 193, 257
Bst4CI	ACNGT	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	2 cut(s)	135, 267
BstF5I	GGATG	1 cut(s)	223
BstKTI	GATC	5 cut(s)	82, 112, 133, 196, 260
BstMBI	GATC	5 cut(s)	79, 109, 130, 193, 257
BstX2I	RGATCY	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	257
Bsu36I	CCTNAGG	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	164
DdeI	CTNAG	2 cut(s)	135, 267
DpnI	GATC	5 cut(s)	81, 111, 132, 195, 259
DpnII	GATC	5 cut(s)	79, 109, 130, 193, 257
Eco81I	CCTNAGG	1 cut(s)	135
FaiI	YATR	5 cut(s)	26, 77, 156, 223, 225
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FaqI	GGGAC	1 cut(s)	153
FokI	GGATG	1 cut(s)	230
FspBI	CTAG	1 cut(s)	54
HinfI	GANTC	1 cut(s)	170
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188I	TCNGA	5 cut(s)	49, 114, 130, 257, 270
Hpy188III	TCNNGA	3 cut(s)	188, 197, 210
Hpy8I	GTNNAC	1 cut(s)	96
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	2 cut(s)	135, 267
Kzo9I	GATC	5 cut(s)	79, 109, 130, 193, 257
LpnPI	CCDG	1 cut(s)	122
MaeI	CTAG	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	36
MalI	GATC	5 cut(s)	81, 111, 132, 195, 259
MboI	GATC	5 cut(s)	79, 109, 130, 193, 257
MflI	RGATCY	1 cut(s)	257
MluCI	AATT	1 cut(s)	115
MnlI	CCTC	2 cut(s)	144, 276
NdeII	GATC	5 cut(s)	79, 109, 130, 193, 257
NmuCI	GTSAC	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	257
Sau3AI	GATC	5 cut(s)	79, 109, 130, 193, 257
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
Sse9I	AATT	1 cut(s)	115
SspMI	CTAG	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	86
TasI	AATT	1 cut(s)	115
TfiI	GAWTC	1 cut(s)	170
TseFI	GTSAC	1 cut(s)	36
Tsp45I	GTSAC	1 cut(s)	36
XapI	RAATTY	1 cut(s)	115
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.